Wall clock time and date at job start Tue Mar 31 2020 17:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52208 * 2 1 4 4 C 1.53621 * 109.63410 * 239.91925 * 2 1 3 5 5 N 1.46924 * 108.54364 * 294.86322 * 4 2 1 6 6 C 1.34781 * 120.63228 * 126.36654 * 5 4 2 7 7 O 1.21609 * 119.99616 * 3.96963 * 6 5 4 8 8 C 1.47395 * 120.00400 * 183.96459 * 6 5 4 9 9 C 1.47102 * 128.56874 * 313.65028 * 8 6 5 10 10 N 1.30006 * 105.33303 * 180.23659 * 9 8 6 11 11 O 1.20659 * 112.30192 * 359.53091 * 10 9 8 12 12 C 1.33495 * 113.15402 * 0.50243 * 11 10 9 13 13 C 1.50702 * 126.83159 * 179.66687 * 12 11 10 14 14 C 1.53004 * 117.49588 * 8.79027 * 13 12 11 15 15 C 1.53000 * 117.50043 * 300.13465 * 13 12 11 16 16 C 1.46921 * 118.74235 * 306.09560 * 5 4 2 17 17 C 1.53194 * 108.77435 * 53.85685 * 16 5 4 18 18 C 1.53035 * 109.49483 * 120.08280 * 2 1 3 19 19 H 1.09009 * 109.44885 * 178.59818 * 18 2 1 20 20 C 1.53000 * 109.46449 * 298.56457 * 18 2 1 21 21 N 1.46494 * 109.47322 * 185.07006 * 20 18 2 22 22 C 1.36937 * 120.00317 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99543 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00360 * 180.02562 * 22 21 20 25 25 N 1.31612 * 120.00142 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00069 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46971 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47130 * 119.99715 * 26 24 22 29 29 H 1.48495 * 109.47189 * 240.00284 * 26 24 22 30 30 H 1.08993 * 109.47283 * 299.91546 * 1 2 3 31 31 H 1.08998 * 109.47005 * 59.91393 * 1 2 3 32 32 H 1.09003 * 109.46798 * 179.91672 * 1 2 3 33 33 H 1.08999 * 109.74006 * 175.12613 * 4 2 1 34 34 H 1.08999 * 109.66402 * 54.55921 * 4 2 1 35 35 H 1.08008 * 127.32799 * 359.97239 * 9 8 6 36 36 H 1.09003 * 115.55174 * 154.45234 * 13 12 11 37 37 H 1.09000 * 117.49670 * 0.02562 * 14 13 12 38 38 H 1.08998 * 117.49921 * 145.01517 * 14 13 12 39 39 H 1.09000 * 117.49665 * 214.97706 * 15 13 12 40 40 H 1.09002 * 117.49744 * 359.97016 * 15 13 12 41 41 H 1.09000 * 109.58996 * 173.64368 * 16 5 4 42 42 H 1.09003 * 109.58874 * 293.93375 * 16 5 4 43 43 H 1.09008 * 109.49661 * 65.32147 * 17 16 5 44 44 H 1.09001 * 109.50119 * 185.38204 * 17 16 5 45 45 H 1.08997 * 109.46808 * 305.07293 * 20 18 2 46 46 H 1.09005 * 109.46860 * 65.06995 * 20 18 2 47 47 H 0.97003 * 120.00221 * 359.97438 * 21 20 18 48 48 H 0.97003 * 120.00636 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0462 -0.7252 -1.2520 5 7 1.6516 -2.1381 -1.1697 6 6 0.9748 -2.7220 -2.1784 7 8 0.7481 -2.1001 -3.1986 8 6 0.5095 -4.1142 -2.0451 9 6 1.2527 -5.2870 -1.5591 10 7 0.4167 -6.2797 -1.6357 11 8 -0.6621 -5.9385 -2.0547 12 6 -0.7253 -4.6367 -2.3436 13 6 -1.9145 -3.8891 -2.8896 14 6 -3.2490 -4.6347 -2.9534 15 6 -2.4738 -4.3409 -4.2401 16 6 2.0140 -2.9040 0.0306 17 6 1.5031 -2.1558 1.2659 18 6 2.0408 -0.7231 1.2483 19 1 3.1306 -0.7445 1.2350 20 6 1.5607 0.0169 2.4984 21 7 2.1480 -0.6031 3.6887 22 6 1.8593 -0.1074 4.9321 23 1 1.1983 0.7405 5.0353 24 6 2.4163 -0.6945 6.0599 25 7 3.2214 -1.7280 5.9342 26 14 2.0230 -0.0177 7.7560 27 1 1.1004 1.1387 7.6259 28 1 1.3783 -1.0762 8.5740 29 1 3.2779 0.4229 8.4164 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1327 -0.6514 -1.2985 34 1 1.6089 -0.2750 -2.1432 35 1 2.2764 -5.3176 -1.2161 36 1 -1.9438 -2.8231 -2.6638 37 1 -3.2669 -5.6657 -2.6001 38 1 -4.1563 -4.0591 -2.7700 39 1 -2.8713 -3.5722 -4.9028 40 1 -1.9813 -5.1786 -4.7340 41 1 1.5554 -3.8918 -0.0140 42 1 3.0979 -3.0064 0.0853 43 1 0.4132 -2.1356 1.2540 44 1 1.8476 -2.6632 2.1669 45 1 1.8685 1.0610 2.4431 46 1 0.4737 -0.0387 2.5586 47 1 2.7409 -1.3653 3.5961 48 1 3.6104 -2.1386 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185410982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:05 Heat of formation + Delta-G solvation = 47.022302 kcal Electronic energy + Delta-G solvation = -29471.994223 eV Core-core repulsion = 25530.724102 eV Total energy + Delta-G solvation = -3941.270121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.02678 -41.45373 -39.29273 -38.31049 -36.57576 -35.30674 -34.43654 -33.18112 -32.60222 -31.97984 -28.53108 -28.23730 -26.01116 -25.25913 -25.03595 -24.16608 -23.34004 -22.94340 -22.20675 -20.76360 -19.66899 -19.21967 -18.78036 -18.61094 -17.85975 -17.12255 -16.82885 -16.70088 -16.30950 -15.86236 -15.48970 -15.44765 -15.31577 -14.87625 -14.77961 -14.69094 -14.38221 -13.93710 -13.69836 -13.57387 -13.25726 -12.97599 -12.85240 -12.77319 -12.66485 -12.50568 -12.46049 -12.21582 -12.14848 -12.03679 -11.91213 -11.60260 -11.49856 -11.47469 -11.42289 -11.23489 -11.00166 -10.87207 -10.26564 -9.67990 -8.95732 -7.94364 -5.21573 0.03418 0.72506 1.47495 1.47760 1.56353 1.57572 1.63673 2.06481 2.56445 2.79612 3.11972 3.18937 3.39558 3.44002 3.64930 3.71751 3.75352 3.82006 3.87468 3.95976 4.04201 4.19129 4.23040 4.31745 4.38250 4.42905 4.46829 4.65997 4.68676 4.72718 4.74099 4.77009 4.82803 4.85665 4.91202 4.98337 5.04092 5.07425 5.17656 5.18790 5.18897 5.24809 5.31830 5.48433 5.53010 5.61168 6.24814 6.29015 6.96692 7.06943 7.35716 8.12854 8.36210 9.29171 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.002796 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.758066 B =10012.374518 C =10509.682731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.121 3.879 5 N -0.590 5.590 6 C 0.603 3.397 7 O -0.561 6.561 8 C -0.270 4.270 9 C 0.031 3.969 10 N -0.371 5.371 11 O 0.088 5.912 12 C 0.073 3.927 13 C -0.114 4.114 14 C -0.150 4.150 15 C -0.145 4.145 16 C 0.106 3.894 17 C -0.120 4.120 18 C -0.078 4.078 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.968 3.032 27 H -0.268 1.268 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -4.420 -21.849 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.001 4.001 5 N -0.321 5.321 6 C 0.391 3.609 7 O -0.441 6.441 8 C -0.277 4.277 9 C -0.151 4.151 10 N -0.078 5.078 11 O 0.030 5.970 12 C 0.009 3.991 13 C -0.133 4.133 14 C -0.186 4.186 15 C -0.182 4.182 16 C -0.016 4.016 17 C -0.158 4.158 18 C -0.097 4.097 19 H 0.089 0.911 20 C 0.032 3.968 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.193 1.193 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.208 0.792 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.901 -5.263 -21.989 24.299 hybrid contribution 0.648 0.731 1.426 1.729 sum -8.253 -4.532 -20.563 22.617 Atomic orbital electron populations 1.21808 0.94968 1.01355 1.01669 1.21497 0.96472 0.99952 0.93021 0.88629 1.21862 1.00541 0.79090 0.98601 1.47943 1.54536 1.12093 1.17520 1.16908 0.77237 0.84025 0.82732 1.90776 1.58534 1.65267 1.29534 1.21937 0.95803 0.96188 1.13811 1.26792 1.02595 0.86099 0.99602 1.73661 0.92952 1.24230 1.16916 1.84518 1.28101 1.23630 1.60783 1.23999 0.96335 0.83601 0.95163 1.20619 0.89929 0.98260 1.04480 1.23256 0.93279 1.01933 1.00181 1.23206 1.01429 1.03843 0.89714 1.22049 1.01526 0.95215 0.82822 1.21825 1.00815 0.95794 0.97352 1.21194 1.00146 0.94710 0.93663 0.91061 1.20846 0.95399 0.94767 0.85759 1.42574 1.56820 1.37545 1.01601 1.19629 1.22039 1.10459 0.85250 0.91054 1.25483 1.00684 0.99117 1.01304 1.69793 1.37099 1.25867 1.29021 0.85146 0.77121 0.77556 0.80391 1.19263 1.22123 1.22063 0.92801 0.92036 0.93579 0.89610 0.88977 0.75674 0.84720 0.87510 0.85524 0.85771 0.88196 0.88935 0.89098 0.92187 0.91868 0.96529 0.96386 0.79186 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.39 71.98 0.60 -2.70 16 2 C -0.09 -2.05 2.72 -10.57 -0.03 -2.08 16 3 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.12 2.54 5.86 86.51 0.51 3.04 16 5 N -0.59 -13.18 2.40 -821.99 -1.97 -15.15 16 6 C 0.60 15.10 7.52 86.65 0.65 15.76 16 7 O -0.56 -16.84 16.53 -4.06 -0.07 -16.90 16 8 C -0.27 -6.19 5.47 -18.75 -0.10 -6.29 16 9 C 0.03 0.64 10.11 87.29 0.88 1.52 16 10 N -0.37 -8.71 12.01 -54.20 -0.65 -9.36 16 11 O 0.09 1.97 10.86 76.96 0.84 2.81 16 12 C 0.07 1.56 7.00 25.48 0.18 1.74 16 13 C -0.11 -1.93 6.15 -11.54 -0.07 -2.00 16 14 C -0.15 -1.71 10.19 30.62 0.31 -1.40 16 15 C -0.14 -1.79 10.24 30.62 0.31 -1.48 16 16 C 0.11 2.29 6.01 86.36 0.52 2.81 16 17 C -0.12 -3.34 4.90 30.67 0.15 -3.19 16 18 C -0.08 -2.24 1.96 -10.77 -0.02 -2.26 16 19 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 20 C 0.16 6.01 5.18 86.38 0.45 6.45 16 21 N -0.74 -36.42 5.32 -343.46 -1.83 -38.24 16 22 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 26 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 30 H 0.05 1.36 6.58 -2.39 -0.02 1.34 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.16 5.97 -2.39 -0.01 1.14 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.01 7.03 -2.39 -0.02 2.00 16 35 H 0.23 3.24 7.64 -2.91 -0.02 3.22 16 36 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.11 1.22 8.02 -2.39 -0.02 1.20 16 38 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.87 4.37 -2.39 -0.01 1.86 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.76 6.34 -2.38 -0.02 1.74 16 44 H 0.06 2.11 7.15 -2.39 -0.02 2.09 16 45 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.02 0.71 6.74 -2.38 -0.02 0.69 16 47 H 0.38 19.34 6.85 -92.71 -0.63 18.71 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -68.72 382.48 4.63 -64.09 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.35 Total: 29.00 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.65 Total: -6.25 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.17 Total: -120.53 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.77 Total: -14.10 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.72 4.63 -64.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.109 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds