Wall clock time and date at job start Tue Mar 31 2020 17:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52583 * 2 1 4 4 C 1.53190 * 109.49907 * 120.08115 * 2 1 3 5 5 N 1.46933 * 108.77632 * 174.58829 * 4 2 1 6 6 C 1.34775 * 120.63108 * 126.36503 * 5 4 2 7 7 O 1.21608 * 120.00113 * 354.38859 * 6 5 4 8 8 C 1.47396 * 120.00017 * 174.38477 * 6 5 4 9 9 C 1.47107 * 128.56661 * 322.69970 * 8 6 5 10 10 N 1.30014 * 105.33163 * 179.88986 * 9 8 6 11 11 O 1.20659 * 112.30099 * 0.39578 * 10 9 8 12 12 C 1.33501 * 113.15558 * 359.73071 * 11 10 9 13 13 C 1.50690 * 126.82849 * 179.97438 * 12 11 10 14 14 C 1.53002 * 117.49949 * 8.75215 * 13 12 11 15 15 C 1.52999 * 117.50471 * 300.09333 * 13 12 11 16 16 C 1.46925 * 118.73384 * 306.64291 * 5 4 2 17 17 C 1.52762 * 109.01164 * 53.31098 * 16 5 4 18 18 C 1.53042 * 109.49732 * 239.91717 * 2 1 3 19 19 H 1.08996 * 109.46224 * 298.70330 * 18 2 1 20 20 C 1.53006 * 109.45699 * 58.67853 * 18 2 1 21 21 N 1.46507 * 109.46753 * 184.99864 * 20 18 2 22 22 C 1.36939 * 119.99527 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99553 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99998 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 120.00167 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47277 * 89.99840 * 26 24 22 28 28 H 1.48498 * 109.46772 * 209.99958 * 26 24 22 29 29 H 1.48503 * 109.46993 * 329.99624 * 26 24 22 30 30 H 1.08990 * 109.47135 * 299.91537 * 1 2 3 31 31 H 1.08994 * 109.47422 * 59.92386 * 1 2 3 32 32 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.59012 * 54.80111 * 4 2 1 34 34 H 1.08999 * 109.70601 * 294.44210 * 4 2 1 35 35 H 1.08003 * 127.33081 * 0.02562 * 9 8 6 36 36 H 1.09000 * 115.55147 * 154.41646 * 13 12 11 37 37 H 1.08997 * 117.50045 * 0.02562 * 14 13 12 38 38 H 1.09006 * 117.49994 * 145.01897 * 14 13 12 39 39 H 1.09000 * 117.50017 * 214.97731 * 15 13 12 40 40 H 1.08997 * 117.49581 * 359.97305 * 15 13 12 41 41 H 1.09002 * 109.58317 * 173.14639 * 16 5 4 42 42 H 1.09000 * 109.59094 * 293.56425 * 16 5 4 43 43 H 1.08998 * 109.56530 * 185.55339 * 17 16 5 44 44 H 1.08996 * 109.38402 * 65.51160 * 17 16 5 45 45 H 1.08997 * 109.46836 * 304.99239 * 20 18 2 46 46 H 1.08996 * 109.47570 * 64.99797 * 20 18 2 47 47 H 0.96998 * 120.00344 * 0.02562 * 21 20 18 48 48 H 0.96999 * 120.00405 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3855 2.1778 7 8 3.7803 0.1992 3.1192 8 6 5.7376 -0.6090 2.1396 9 6 6.4726 -1.7829 1.6438 10 7 7.7295 -1.5016 1.8211 11 8 7.8894 -0.4158 2.3225 12 6 6.7434 0.2251 2.5636 13 6 6.5846 1.5913 3.1791 14 6 7.8513 2.4238 3.3876 15 6 7.1389 1.7994 4.5899 16 6 4.1055 -1.4215 -0.0333 17 6 3.5708 -0.6950 -1.2661 18 6 2.0408 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2353 20 6 1.5039 -0.0230 -2.4984 21 7 1.8934 -0.7829 -3.6889 22 6 1.5221 -0.3453 -4.9322 23 1 0.9419 0.5598 -5.0352 24 6 1.8906 -1.0656 -6.0601 25 7 1.5334 -0.6453 -7.2552 26 14 2.8923 -2.6323 -5.8819 27 1 1.9761 -3.7927 -5.7448 28 1 3.7449 -2.8140 -7.0841 29 1 3.7524 -2.5352 -4.6752 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7216 1.2980 34 1 1.7638 -0.1601 2.1402 35 1 6.0567 -2.6852 1.2204 36 1 5.6709 2.1232 2.9138 37 1 8.7994 1.9834 3.0791 38 1 7.7708 3.5033 3.2599 39 1 6.5900 2.4684 5.2527 40 1 7.6180 0.9479 5.0730 41 1 5.1895 -1.3159 0.0099 42 1 3.8413 -2.4774 -0.0916 43 1 3.9334 -1.1897 -2.1671 44 1 3.9159 0.3389 -1.2547 45 1 0.4169 0.0348 -2.4438 46 1 1.9188 0.9832 -2.5579 47 1 2.4135 -1.5964 -3.5964 48 1 1.7905 -1.1488 -8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185410983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:09 Heat of formation + Delta-G solvation = 66.109960 kcal Electronic energy + Delta-G solvation = -29238.122547 eV Core-core repulsion = 25297.680129 eV Total energy + Delta-G solvation = -3940.442418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.24966 -40.40856 -38.26462 -37.69353 -35.25952 -34.32780 -33.38496 -32.13850 -31.86266 -30.75115 -27.43029 -27.21456 -24.91549 -24.42273 -23.41775 -22.83077 -22.57162 -21.66083 -21.13230 -20.06626 -19.26405 -18.15299 -17.82052 -17.57884 -17.07826 -16.35381 -15.99381 -15.31735 -14.90887 -14.82509 -14.51732 -14.24104 -14.14156 -13.97805 -13.54013 -13.39315 -13.04957 -12.99684 -12.64803 -12.46812 -12.08247 -12.04898 -11.99488 -11.92632 -11.78009 -11.56789 -11.36722 -11.03504 -10.92769 -10.91642 -10.73463 -10.55656 -10.44390 -10.20994 -10.16998 -10.01908 -9.60540 -9.53307 -8.92030 -8.76944 -7.24262 -5.79051 -3.14328 0.77175 1.48470 2.36827 2.55621 2.90772 3.32342 3.35356 3.35611 3.42116 3.83521 3.87393 4.21402 4.31254 4.44964 4.49568 4.55905 4.64746 4.74532 4.85081 4.89109 4.95506 5.09167 5.14449 5.19631 5.28391 5.34515 5.40367 5.44698 5.50850 5.55932 5.59405 5.63916 5.64162 5.68052 5.73015 5.75703 5.85811 6.08015 6.13154 6.17024 6.29507 6.34445 6.40384 6.70152 6.77931 7.13716 7.81945 7.89138 7.97580 8.40082 9.19219 9.91473 10.11343 11.39583 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003000 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.999981 B = 9330.579194 C =10293.589690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.598 5.598 6 C 0.600 3.400 7 O -0.533 6.533 8 C -0.250 4.250 9 C 0.024 3.976 10 N -0.351 5.351 11 O 0.093 5.907 12 C 0.072 3.928 13 C -0.089 4.089 14 C -0.166 4.166 15 C -0.152 4.152 16 C 0.099 3.901 17 C -0.128 4.128 18 C -0.093 4.093 19 H 0.072 0.928 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.203 0.797 36 H 0.143 0.857 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.025 0.975 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 1.569 24.722 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.387 3.613 7 O -0.411 6.411 8 C -0.258 4.258 9 C -0.159 4.159 10 N -0.056 5.056 11 O 0.033 5.967 12 C 0.008 3.992 13 C -0.108 4.108 14 C -0.203 4.203 15 C -0.189 4.189 16 C -0.024 4.024 17 C -0.166 4.166 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.220 0.780 36 H 0.161 0.839 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.156 1.377 24.792 26.827 hybrid contribution -0.108 -1.221 -0.322 1.268 sum 10.048 0.155 24.470 26.453 Atomic orbital electron populations 1.21836 0.94079 1.02284 1.02335 1.21445 0.96329 1.00036 0.93782 0.90622 1.21773 0.77861 1.01147 0.99519 1.47931 1.07127 1.60415 1.17565 1.16821 0.83769 0.78420 0.82268 1.90796 1.74254 1.41705 1.34339 1.21933 0.95473 0.96755 1.11619 1.26434 0.88147 1.00367 1.00909 1.73687 1.20051 0.97761 1.14080 1.84545 1.31507 1.22118 1.58549 1.23660 0.84361 0.95154 0.96032 1.20539 1.00894 0.88727 1.00610 1.23158 0.95402 0.99943 1.01754 1.23094 1.02515 1.03463 0.89830 1.21997 0.98458 0.97575 0.84342 1.21883 0.96262 1.01552 0.96913 1.21409 0.94521 1.00306 0.94999 0.90923 1.20736 0.97260 0.94100 0.84520 1.42729 1.66102 1.28658 1.02627 1.19060 1.28305 1.07970 0.81919 0.89282 1.24678 1.00726 0.98711 0.95126 1.69698 1.50939 1.40589 0.97059 0.86553 0.80404 0.84726 0.76817 1.21108 1.21750 1.20424 0.92811 0.91098 0.92466 0.91196 0.88855 0.78048 0.83921 0.87634 0.87262 0.87157 0.88133 0.89715 0.90945 0.89749 0.91338 0.94872 0.95727 0.80771 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.82 37.16 0.33 -1.27 16 2 C -0.10 -1.13 2.41 -90.50 -0.22 -1.35 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.30 5.73 -3.71 -0.02 1.28 16 5 N -0.60 -6.83 2.98 -174.30 -0.52 -7.35 16 6 C 0.60 7.56 7.56 -12.53 -0.09 7.46 16 7 O -0.53 -7.95 16.13 5.27 0.08 -7.87 16 8 C -0.25 -2.83 5.51 -102.89 -0.57 -3.40 16 9 C 0.02 0.24 10.08 -14.72 -0.15 0.09 16 10 N -0.35 -4.03 12.01 31.81 0.38 -3.65 16 11 O 0.09 1.02 10.86 18.63 0.20 1.22 16 12 C 0.07 0.75 7.00 -34.63 -0.24 0.51 16 13 C -0.09 -0.76 5.85 -91.78 -0.54 -1.29 16 14 C -0.17 -1.02 10.19 -26.70 -0.27 -1.29 16 15 C -0.15 -1.00 10.24 -26.70 -0.27 -1.27 16 16 C 0.10 1.05 5.60 -3.93 -0.02 1.03 16 17 C -0.13 -1.69 5.23 -26.83 -0.14 -1.83 16 18 C -0.09 -1.29 1.73 -90.57 -0.16 -1.45 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 20 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 21 N -0.76 -17.26 5.12 -59.90 -0.31 -17.57 16 22 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 26 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 35 H 0.20 1.50 7.46 -52.48 -0.39 1.11 16 36 H 0.14 1.29 8.08 -51.93 -0.42 0.87 16 37 H 0.11 0.63 8.02 -51.93 -0.42 0.22 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.85 4.68 -51.93 -0.24 0.60 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.25 7.15 -51.93 -0.37 0.88 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.36 7.93 4.71 -40.82 -0.19 7.74 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -33.22 382.33 -8.26 -41.49 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.28 Total: 6.24 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.64 Total: -6.80 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.33 Total: -57.01 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.29 Total: -6.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.22 -8.26 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.596 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds