Wall clock time and date at job start Tue Mar 31 2020 17:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52583 * 2 1 4 4 C 1.53190 * 109.49907 * 120.08115 * 2 1 3 5 5 N 1.46933 * 108.77632 * 174.58829 * 4 2 1 6 6 C 1.34775 * 120.63108 * 126.36503 * 5 4 2 7 7 O 1.21608 * 120.00113 * 354.38859 * 6 5 4 8 8 C 1.47396 * 120.00017 * 174.38477 * 6 5 4 9 9 C 1.47107 * 128.56661 * 322.69970 * 8 6 5 10 10 N 1.30014 * 105.33163 * 179.88986 * 9 8 6 11 11 O 1.20659 * 112.30099 * 0.39578 * 10 9 8 12 12 C 1.33501 * 113.15558 * 359.73071 * 11 10 9 13 13 C 1.50690 * 126.82849 * 179.97438 * 12 11 10 14 14 C 1.53002 * 117.49949 * 8.75215 * 13 12 11 15 15 C 1.52999 * 117.50471 * 300.09333 * 13 12 11 16 16 C 1.46925 * 118.73384 * 306.64291 * 5 4 2 17 17 C 1.52762 * 109.01164 * 53.31098 * 16 5 4 18 18 C 1.53042 * 109.49732 * 239.91717 * 2 1 3 19 19 H 1.08996 * 109.46224 * 298.70330 * 18 2 1 20 20 C 1.53006 * 109.45699 * 58.67853 * 18 2 1 21 21 N 1.46507 * 109.46753 * 184.99864 * 20 18 2 22 22 C 1.36939 * 119.99527 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99553 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99998 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 120.00167 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47277 * 89.99840 * 26 24 22 28 28 H 1.48498 * 109.46772 * 209.99958 * 26 24 22 29 29 H 1.48503 * 109.46993 * 329.99624 * 26 24 22 30 30 H 1.08990 * 109.47135 * 299.91537 * 1 2 3 31 31 H 1.08994 * 109.47422 * 59.92386 * 1 2 3 32 32 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.59012 * 54.80111 * 4 2 1 34 34 H 1.08999 * 109.70601 * 294.44210 * 4 2 1 35 35 H 1.08003 * 127.33081 * 0.02562 * 9 8 6 36 36 H 1.09000 * 115.55147 * 154.41646 * 13 12 11 37 37 H 1.08997 * 117.50045 * 0.02562 * 14 13 12 38 38 H 1.09006 * 117.49994 * 145.01897 * 14 13 12 39 39 H 1.09000 * 117.50017 * 214.97731 * 15 13 12 40 40 H 1.08997 * 117.49581 * 359.97305 * 15 13 12 41 41 H 1.09002 * 109.58317 * 173.14639 * 16 5 4 42 42 H 1.09000 * 109.59094 * 293.56425 * 16 5 4 43 43 H 1.08998 * 109.56530 * 185.55339 * 17 16 5 44 44 H 1.08996 * 109.38402 * 65.51160 * 17 16 5 45 45 H 1.08997 * 109.46836 * 304.99239 * 20 18 2 46 46 H 1.08996 * 109.47570 * 64.99797 * 20 18 2 47 47 H 0.96998 * 120.00344 * 0.02562 * 21 20 18 48 48 H 0.96999 * 120.00405 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3855 2.1778 7 8 3.7803 0.1992 3.1192 8 6 5.7376 -0.6090 2.1396 9 6 6.4726 -1.7829 1.6438 10 7 7.7295 -1.5016 1.8211 11 8 7.8894 -0.4158 2.3225 12 6 6.7434 0.2251 2.5636 13 6 6.5846 1.5913 3.1791 14 6 7.8513 2.4238 3.3876 15 6 7.1389 1.7994 4.5899 16 6 4.1055 -1.4215 -0.0333 17 6 3.5708 -0.6950 -1.2661 18 6 2.0408 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2353 20 6 1.5039 -0.0230 -2.4984 21 7 1.8934 -0.7829 -3.6889 22 6 1.5221 -0.3453 -4.9322 23 1 0.9419 0.5598 -5.0352 24 6 1.8906 -1.0656 -6.0601 25 7 1.5334 -0.6453 -7.2552 26 14 2.8923 -2.6323 -5.8819 27 1 1.9761 -3.7927 -5.7448 28 1 3.7449 -2.8140 -7.0841 29 1 3.7524 -2.5352 -4.6752 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7216 1.2980 34 1 1.7638 -0.1601 2.1402 35 1 6.0567 -2.6852 1.2204 36 1 5.6709 2.1232 2.9138 37 1 8.7994 1.9834 3.0791 38 1 7.7708 3.5033 3.2599 39 1 6.5900 2.4684 5.2527 40 1 7.6180 0.9479 5.0730 41 1 5.1895 -1.3159 0.0099 42 1 3.8413 -2.4774 -0.0916 43 1 3.9334 -1.1897 -2.1671 44 1 3.9159 0.3389 -1.2547 45 1 0.4169 0.0348 -2.4438 46 1 1.9188 0.9832 -2.5579 47 1 2.4135 -1.5964 -3.5964 48 1 1.7905 -1.1488 -8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185410983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:08 Heat of formation + Delta-G solvation = 46.116026 kcal Electronic energy + Delta-G solvation = -29238.989549 eV Core-core repulsion = 25297.680129 eV Total energy + Delta-G solvation = -3941.309420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.04084 -41.37378 -39.31434 -38.32118 -36.71531 -35.42031 -34.50493 -33.56918 -32.65793 -32.38632 -28.78332 -28.14799 -26.01346 -25.16821 -24.82732 -23.71960 -23.32715 -22.76766 -22.22397 -21.15355 -20.16712 -19.64231 -18.93022 -18.60898 -17.84283 -17.29298 -16.73899 -16.62526 -16.27688 -15.89302 -15.66562 -15.59984 -15.04898 -14.85463 -14.77841 -14.61580 -14.46806 -14.09108 -13.97444 -13.31856 -13.27527 -13.15490 -12.94021 -12.86183 -12.73338 -12.69105 -12.47462 -12.22317 -12.17876 -11.99523 -11.85210 -11.66439 -11.62493 -11.49694 -11.42597 -11.24307 -11.08712 -10.89754 -10.29448 -9.71553 -9.26788 -8.02038 -5.35405 -0.02919 0.69565 1.37088 1.42571 1.49806 1.56102 1.67655 2.04718 2.49376 2.78581 3.09741 3.17660 3.29384 3.41278 3.52630 3.64282 3.69818 3.78360 3.84670 3.94729 3.98424 4.05675 4.16608 4.25530 4.35314 4.43220 4.48628 4.59856 4.66729 4.69917 4.72272 4.73100 4.78661 4.82703 4.90696 4.97866 5.03454 5.07091 5.08360 5.17708 5.19697 5.24315 5.35037 5.46088 5.57399 5.76781 6.21543 6.22433 6.94275 7.05118 7.09345 7.85169 8.05683 9.19827 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003000 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.999981 B = 9330.579194 C =10293.589690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.063 0.937 4 C 0.122 3.878 5 N -0.596 5.596 6 C 0.601 3.399 7 O -0.562 6.562 8 C -0.273 4.273 9 C 0.036 3.964 10 N -0.371 5.371 11 O 0.087 5.913 12 C 0.077 3.923 13 C -0.114 4.114 14 C -0.150 4.150 15 C -0.145 4.145 16 C 0.105 3.895 17 C -0.126 4.126 18 C -0.083 4.083 19 H 0.084 0.916 20 C 0.159 3.841 21 N -0.754 5.754 22 C -0.234 4.234 23 H 0.051 0.949 24 C -0.067 4.067 25 N -0.987 5.987 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.299 1.299 29 H -0.244 1.244 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.012 0.988 47 H 0.367 0.633 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -0.118 26.930 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.082 0.918 4 C 0.001 3.999 5 N -0.327 5.327 6 C 0.389 3.611 7 O -0.442 6.442 8 C -0.280 4.280 9 C -0.147 4.147 10 N -0.079 5.079 11 O 0.029 5.971 12 C 0.013 3.987 13 C -0.133 4.133 14 C -0.187 4.187 15 C -0.182 4.182 16 C -0.017 4.017 17 C -0.164 4.164 18 C -0.102 4.102 19 H 0.102 0.898 20 C 0.033 3.967 21 N -0.400 5.400 22 C -0.365 4.365 23 H 0.069 0.931 24 C -0.258 4.258 25 N -0.638 5.638 26 Si 0.783 3.217 27 H -0.203 1.203 28 H -0.226 1.226 29 H -0.168 1.168 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.030 0.970 47 H 0.201 0.799 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.347 -0.295 27.056 29.341 hybrid contribution -0.550 -0.543 -0.996 1.261 sum 10.797 -0.837 26.061 28.221 Atomic orbital electron populations 1.21807 0.93293 1.02898 1.02296 1.21342 0.96916 0.99221 0.93229 0.91845 1.21774 0.77693 1.01987 0.98474 1.47969 1.07276 1.59999 1.17467 1.16951 0.84221 0.77850 0.82035 1.90776 1.74854 1.43073 1.35520 1.21926 0.95016 0.97805 1.13294 1.26837 0.87512 1.00616 0.99720 1.73675 1.20794 0.98216 1.15167 1.84532 1.31584 1.22163 1.58787 1.24033 0.84167 0.95592 0.94869 1.20623 1.01856 0.88431 1.02388 1.23263 0.94248 1.00572 1.00614 1.23202 1.02060 1.03642 0.89277 1.22021 0.98849 0.98340 0.82522 1.21822 0.95618 1.01129 0.97850 1.21309 0.95010 1.00426 0.93420 0.89808 1.20882 0.97274 0.93584 0.84997 1.42686 1.66020 1.29226 1.02117 1.19023 1.26853 1.06440 0.84199 0.93057 1.25567 1.02745 1.02964 0.94564 1.69898 1.53128 1.42635 0.98106 0.85391 0.78932 0.79667 0.77706 1.20269 1.22575 1.16799 0.91246 0.92778 0.91504 0.89196 0.89271 0.75436 0.84812 0.87398 0.85608 0.85877 0.88099 0.88838 0.88392 0.90923 0.92641 0.94991 0.97034 0.79889 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.82 71.98 0.63 -2.26 16 2 C -0.09 -1.89 2.41 -10.72 -0.03 -1.92 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.12 2.37 5.73 86.36 0.49 2.87 16 5 N -0.60 -12.19 2.98 -823.63 -2.45 -14.65 16 6 C 0.60 14.24 7.56 86.66 0.66 14.89 16 7 O -0.56 -16.29 16.13 -4.06 -0.07 -16.35 16 8 C -0.27 -5.77 5.51 -18.74 -0.10 -5.88 16 9 C 0.04 0.64 10.08 87.29 0.88 1.52 16 10 N -0.37 -7.93 12.01 -54.19 -0.65 -8.58 16 11 O 0.09 1.79 10.86 76.91 0.84 2.63 16 12 C 0.08 1.55 7.00 25.48 0.18 1.73 16 13 C -0.11 -1.84 5.85 -11.54 -0.07 -1.91 16 14 C -0.15 -1.60 10.19 30.62 0.31 -1.29 16 15 C -0.14 -1.69 10.24 30.62 0.31 -1.38 16 16 C 0.10 1.91 5.60 86.22 0.48 2.39 16 17 C -0.13 -3.07 5.23 30.53 0.16 -2.91 16 18 C -0.08 -2.13 1.73 -10.76 -0.02 -2.15 16 19 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.16 5.71 5.41 86.38 0.47 6.18 16 21 N -0.75 -33.86 5.12 -343.44 -1.76 -35.62 16 22 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 25 N -0.99 -63.34 13.97 21.65 0.30 -63.04 16 26 Si 0.96 44.17 27.74 68.60 1.90 46.08 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.24 -9.77 6.52 99.48 0.65 -9.12 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.26 6.30 -2.39 -0.02 1.25 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.87 6.99 -2.39 -0.02 1.86 16 35 H 0.23 2.59 7.46 -2.91 -0.02 2.57 16 36 H 0.13 2.40 8.08 -2.39 -0.02 2.38 16 37 H 0.11 1.12 8.02 -2.39 -0.02 1.10 16 38 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.58 4.68 -2.39 -0.01 1.57 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.97 7.15 -2.39 -0.02 1.95 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.03 1.18 6.14 -2.39 -0.01 1.17 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.37 15.32 4.71 -92.71 -0.44 14.88 16 48 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -73.52 382.33 4.30 -69.21 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.48 Total: 26.30 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.71 Total: -5.98 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -4.56 Total: -121.88 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.77 Total: -13.72 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.08 kcal Total: -73.52 4.30 -69.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.328 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds