Wall clock time and date at job start Tue Mar 31 2020 17:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49555 * 2 1 4 4 C 1.52753 * 109.59181 * 240.04219 * 2 1 3 5 5 N 1.46929 * 109.00643 * 185.53664 * 4 2 1 6 6 C 1.34775 * 120.63057 * 233.58440 * 5 4 2 7 7 O 1.21614 * 120.00251 * 5.44344 * 6 5 4 8 8 C 1.47401 * 120.00142 * 185.43865 * 6 5 4 9 9 C 1.47102 * 128.56362 * 35.96137 * 8 6 5 10 10 N 1.30012 * 105.32826 * 179.97438 * 9 8 6 11 11 O 1.20652 * 112.30396 * 359.97438 * 10 9 8 12 12 C 1.33493 * 113.15786 * 0.02562 * 11 10 9 13 13 C 1.50698 * 126.83190 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.49751 * 8.64060 * 13 12 11 15 15 C 1.52995 * 60.00276 * 252.51324 * 14 13 12 16 16 C 1.46928 * 118.74054 * 53.30894 * 5 4 2 17 17 C 1.53191 * 108.77261 * 306.64434 * 16 5 4 18 18 C 1.53043 * 109.31742 * 54.63504 * 17 16 5 19 19 H 1.08998 * 109.45825 * 58.64775 * 18 17 16 20 20 C 1.52999 * 109.46410 * 178.61292 * 18 17 16 21 21 N 1.46501 * 109.46926 * 294.99879 * 20 18 17 22 22 C 1.36940 * 119.99729 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99776 * 0.02562 * 22 21 20 24 24 C 1.38807 * 119.99578 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00392 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99699 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46890 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47378 * 119.99966 * 26 24 22 29 29 H 1.48503 * 109.47036 * 239.99837 * 26 24 22 30 30 H 1.08997 * 109.47546 * 299.93891 * 1 2 3 31 31 H 1.08995 * 109.47255 * 59.94554 * 1 2 3 32 32 H 1.09006 * 109.46731 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50972 * 65.65576 * 4 2 1 34 34 H 1.09001 * 109.43440 * 305.36479 * 4 2 1 35 35 H 1.07997 * 127.33100 * 359.95821 * 9 8 6 36 36 H 1.09002 * 115.55221 * 154.35371 * 13 12 11 37 37 H 1.09000 * 117.50004 * 0.02562 * 14 13 12 38 38 H 1.09005 * 117.49471 * 145.02356 * 14 13 12 39 39 H 1.09004 * 117.50282 * 252.51115 * 15 14 13 40 40 H 1.08995 * 117.51875 * 107.48258 * 15 14 13 41 41 H 1.08995 * 109.58917 * 66.42915 * 16 5 4 42 42 H 1.08999 * 109.58747 * 186.71657 * 16 5 4 43 43 H 1.08999 * 109.49883 * 174.58851 * 17 16 5 44 44 H 1.09006 * 109.50235 * 294.65021 * 17 16 5 45 45 H 1.09002 * 109.46685 * 54.99983 * 20 18 17 46 46 H 1.09000 * 109.47022 * 174.99992 * 20 18 17 47 47 H 0.96996 * 120.00259 * 0.02562 * 21 20 18 48 48 H 0.97007 * 120.00308 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2468 5 7 3.5053 -0.8283 -1.1688 6 6 4.2820 -0.3846 -2.1769 7 8 3.7813 0.2010 -3.1178 8 6 5.7383 -0.6090 -2.1391 9 6 6.4737 -1.7723 -1.6197 10 7 7.7301 -1.4979 -1.8107 11 8 7.8897 -0.4216 -2.3319 12 6 6.7437 0.2162 -2.5810 13 6 6.5845 1.5719 -3.2195 14 6 7.8341 2.2229 -3.8159 15 6 7.2354 2.7647 -2.5164 16 6 4.1060 -1.4254 0.0319 17 6 3.5708 -0.6938 1.2668 18 6 2.0408 -0.7226 1.2487 19 1 1.6972 -1.7569 1.2357 20 6 1.5029 -0.0227 2.4985 21 7 1.8910 -0.7831 3.6891 22 6 1.5195 -0.3452 4.9323 23 1 0.9402 0.5604 5.0349 24 6 1.8876 -1.0655 6.0603 25 7 2.5932 -2.1694 5.9351 26 14 1.3803 -0.4685 7.7562 27 1 0.5982 0.7870 7.6255 28 1 0.5470 -1.5049 8.4170 29 1 2.5931 -0.2129 8.5742 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5146 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7653 -0.1498 -2.1344 34 1 1.6034 -1.7151 -1.2971 35 1 6.0583 -2.6642 -1.1744 36 1 5.6357 1.7437 -3.7279 37 1 8.7712 1.6704 -3.7467 38 1 7.7075 2.8231 -4.7170 39 1 6.7150 3.7214 -2.5624 40 1 7.7783 2.5690 -1.5917 41 1 3.8388 -2.4806 0.0880 42 1 5.1904 -1.3250 -0.0135 43 1 3.9334 -1.1880 2.1681 44 1 3.9158 0.3402 1.2551 45 1 1.9181 0.9833 2.5585 46 1 0.4159 0.0355 2.4429 47 1 2.4116 -1.5963 3.5968 48 1 2.8508 -2.6725 6.7235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185410984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:12 Heat of formation + Delta-G solvation = 61.582976 kcal Electronic energy + Delta-G solvation = -29180.143058 eV Core-core repulsion = 25239.504336 eV Total energy + Delta-G solvation = -3940.638723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.18056 -40.31604 -38.16814 -37.63399 -35.11147 -34.23482 -33.31000 -32.05157 -31.78559 -30.34989 -27.26039 -26.96931 -24.81272 -24.34823 -23.52729 -22.80192 -22.52183 -21.66594 -21.15752 -19.91412 -19.16746 -18.01214 -17.77656 -17.17454 -16.94672 -16.25810 -15.92318 -15.25347 -14.84928 -14.76278 -14.46761 -14.12578 -13.94613 -13.85276 -13.56382 -13.35360 -13.01302 -12.66075 -12.59659 -12.45287 -12.00303 -11.97717 -11.87347 -11.84432 -11.64721 -11.53761 -11.02209 -10.92708 -10.87587 -10.84866 -10.64861 -10.41552 -10.35573 -10.21189 -10.04446 -9.90504 -9.65897 -9.47303 -8.88723 -8.67948 -6.92419 -5.78958 -3.06803 0.83145 1.56041 2.43899 2.66560 2.96374 3.41539 3.41630 3.47578 3.49505 3.89041 3.95417 4.28779 4.37349 4.48778 4.56375 4.57985 4.76527 4.90273 4.94737 4.97185 5.08512 5.17161 5.23541 5.26002 5.40510 5.45423 5.46944 5.52200 5.55922 5.65509 5.67772 5.68937 5.75030 5.82342 5.87925 5.94774 6.04280 6.19040 6.25804 6.30034 6.41397 6.47053 6.59294 6.80760 6.90686 7.23124 7.69026 7.89389 7.96641 8.40471 9.51782 10.09947 10.44404 11.44091 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.002784 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.013553 B =10053.422355 C =10828.450952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.601 3.399 7 O -0.539 6.539 8 C -0.250 4.250 9 C 0.025 3.975 10 N -0.351 5.351 11 O 0.093 5.907 12 C 0.071 3.929 13 C -0.094 4.094 14 C -0.163 4.163 15 C -0.157 4.157 16 C 0.098 3.902 17 C -0.125 4.125 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.204 0.796 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 5.090 -20.893 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.389 3.611 7 O -0.417 6.417 8 C -0.257 4.257 9 C -0.158 4.158 10 N -0.056 5.056 11 O 0.032 5.968 12 C 0.007 3.993 13 C -0.113 4.113 14 C -0.200 4.200 15 C -0.195 4.195 16 C -0.024 4.024 17 C -0.163 4.163 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.221 0.779 36 H 0.168 0.832 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.043 0.957 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.862 4.858 -21.006 22.949 hybrid contribution -0.893 -0.089 1.188 1.489 sum 6.968 4.769 -19.817 21.541 Atomic orbital electron populations 1.21828 0.94234 1.02239 1.02128 1.21383 0.96211 1.00023 0.94105 0.90853 1.21668 0.77950 1.01146 0.99482 1.47938 1.07115 1.60087 1.17719 1.16808 0.83752 0.78312 0.82241 1.90768 1.74292 1.42129 1.34552 1.21932 0.95489 0.97265 1.11055 1.26466 0.88120 1.00442 1.00739 1.73683 1.20090 0.98126 1.13716 1.84540 1.31560 1.22803 1.57879 1.23658 0.84389 0.95199 0.96016 1.20710 1.00753 0.85040 1.04838 1.23103 0.96157 1.02850 0.97881 1.23141 1.02607 0.96556 0.97146 1.22131 0.98396 0.97619 0.84294 1.21925 0.96136 1.01158 0.97062 1.21347 0.94593 1.00242 0.94600 0.90887 1.20752 0.96692 0.94040 0.85599 1.42384 1.65411 1.28965 1.00874 1.19267 1.27530 1.06178 0.83826 0.91237 1.24718 1.00967 0.97544 0.97805 1.69655 1.42899 1.17314 1.28429 0.86140 0.77668 0.77767 0.84768 1.20589 1.21886 1.21904 0.91252 0.92943 0.92465 0.88996 0.91209 0.77933 0.83197 0.87678 0.87330 0.87152 0.87970 0.90811 0.89749 0.89156 0.91769 0.96598 0.95745 0.78339 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.10 -1.22 2.40 -90.72 -0.22 -1.44 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.41 5.70 -3.94 -0.02 1.38 16 5 N -0.60 -7.30 2.98 -174.31 -0.52 -7.82 16 6 C 0.60 7.99 7.57 -12.53 -0.09 7.90 16 7 O -0.54 -8.33 15.45 5.27 0.08 -8.25 16 8 C -0.25 -2.99 5.56 -102.89 -0.57 -3.56 16 9 C 0.02 0.27 10.06 -14.73 -0.15 0.12 16 10 N -0.35 -4.24 12.01 31.80 0.38 -3.86 16 11 O 0.09 1.06 10.86 18.65 0.20 1.26 16 12 C 0.07 0.79 7.00 -34.63 -0.24 0.54 16 13 C -0.09 -0.85 6.03 -91.77 -0.55 -1.40 16 14 C -0.16 -1.06 10.18 -26.73 -0.27 -1.33 16 15 C -0.16 -1.12 10.23 -26.73 -0.27 -1.40 16 16 C 0.10 1.14 5.60 -3.71 -0.02 1.12 16 17 C -0.12 -1.79 5.25 -26.61 -0.14 -1.92 16 18 C -0.09 -1.33 1.73 -90.58 -0.16 -1.48 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.00 5.41 -4.04 -0.02 2.98 16 21 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 22 C -0.24 -6.51 9.99 -15.06 -0.15 -6.67 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.41 5.50 -17.44 -0.10 -0.51 16 25 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 26 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 30 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.20 1.67 7.35 -52.49 -0.39 1.28 16 36 H 0.15 1.47 7.23 -51.93 -0.38 1.09 16 37 H 0.10 0.66 8.02 -51.93 -0.42 0.24 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.92 4.57 -51.93 -0.24 0.68 16 43 H 0.09 1.49 7.15 -51.93 -0.37 1.11 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 47 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -32.06 383.87 -8.61 -40.67 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.27 Total: 7.21 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.65 Total: -7.04 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.27 Total: -56.82 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.28 Total: -6.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.06 -8.61 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.250 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds