Wall clock time and date at job start Tue Mar 31 2020 17:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49555 * 2 1 4 4 C 1.52753 * 109.59181 * 240.04219 * 2 1 3 5 5 N 1.46929 * 109.00643 * 185.53664 * 4 2 1 6 6 C 1.34775 * 120.63057 * 233.58440 * 5 4 2 7 7 O 1.21614 * 120.00251 * 5.44344 * 6 5 4 8 8 C 1.47401 * 120.00142 * 185.43865 * 6 5 4 9 9 C 1.47102 * 128.56362 * 35.96137 * 8 6 5 10 10 N 1.30012 * 105.32826 * 179.97438 * 9 8 6 11 11 O 1.20652 * 112.30396 * 359.97438 * 10 9 8 12 12 C 1.33493 * 113.15786 * 0.02562 * 11 10 9 13 13 C 1.50698 * 126.83190 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.49751 * 8.64060 * 13 12 11 15 15 C 1.52995 * 60.00276 * 252.51324 * 14 13 12 16 16 C 1.46928 * 118.74054 * 53.30894 * 5 4 2 17 17 C 1.53191 * 108.77261 * 306.64434 * 16 5 4 18 18 C 1.53043 * 109.31742 * 54.63504 * 17 16 5 19 19 H 1.08998 * 109.45825 * 58.64775 * 18 17 16 20 20 C 1.52999 * 109.46410 * 178.61292 * 18 17 16 21 21 N 1.46501 * 109.46926 * 294.99879 * 20 18 17 22 22 C 1.36940 * 119.99729 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99776 * 0.02562 * 22 21 20 24 24 C 1.38807 * 119.99578 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00392 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99699 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46890 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47378 * 119.99966 * 26 24 22 29 29 H 1.48503 * 109.47036 * 239.99837 * 26 24 22 30 30 H 1.08997 * 109.47546 * 299.93891 * 1 2 3 31 31 H 1.08995 * 109.47255 * 59.94554 * 1 2 3 32 32 H 1.09006 * 109.46731 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50972 * 65.65576 * 4 2 1 34 34 H 1.09001 * 109.43440 * 305.36479 * 4 2 1 35 35 H 1.07997 * 127.33100 * 359.95821 * 9 8 6 36 36 H 1.09002 * 115.55221 * 154.35371 * 13 12 11 37 37 H 1.09000 * 117.50004 * 0.02562 * 14 13 12 38 38 H 1.09005 * 117.49471 * 145.02356 * 14 13 12 39 39 H 1.09004 * 117.50282 * 252.51115 * 15 14 13 40 40 H 1.08995 * 117.51875 * 107.48258 * 15 14 13 41 41 H 1.08995 * 109.58917 * 66.42915 * 16 5 4 42 42 H 1.08999 * 109.58747 * 186.71657 * 16 5 4 43 43 H 1.08999 * 109.49883 * 174.58851 * 17 16 5 44 44 H 1.09006 * 109.50235 * 294.65021 * 17 16 5 45 45 H 1.09002 * 109.46685 * 54.99983 * 20 18 17 46 46 H 1.09000 * 109.47022 * 174.99992 * 20 18 17 47 47 H 0.96996 * 120.00259 * 0.02562 * 21 20 18 48 48 H 0.97007 * 120.00308 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2468 5 7 3.5053 -0.8283 -1.1688 6 6 4.2820 -0.3846 -2.1769 7 8 3.7813 0.2010 -3.1178 8 6 5.7383 -0.6090 -2.1391 9 6 6.4737 -1.7723 -1.6197 10 7 7.7301 -1.4979 -1.8107 11 8 7.8897 -0.4216 -2.3319 12 6 6.7437 0.2162 -2.5810 13 6 6.5845 1.5719 -3.2195 14 6 7.8341 2.2229 -3.8159 15 6 7.2354 2.7647 -2.5164 16 6 4.1060 -1.4254 0.0319 17 6 3.5708 -0.6938 1.2668 18 6 2.0408 -0.7226 1.2487 19 1 1.6972 -1.7569 1.2357 20 6 1.5029 -0.0227 2.4985 21 7 1.8910 -0.7831 3.6891 22 6 1.5195 -0.3452 4.9323 23 1 0.9402 0.5604 5.0349 24 6 1.8876 -1.0655 6.0603 25 7 2.5932 -2.1694 5.9351 26 14 1.3803 -0.4685 7.7562 27 1 0.5982 0.7870 7.6255 28 1 0.5470 -1.5049 8.4170 29 1 2.5931 -0.2129 8.5742 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5146 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7653 -0.1498 -2.1344 34 1 1.6034 -1.7151 -1.2971 35 1 6.0583 -2.6642 -1.1744 36 1 5.6357 1.7437 -3.7279 37 1 8.7712 1.6704 -3.7467 38 1 7.7075 2.8231 -4.7170 39 1 6.7150 3.7214 -2.5624 40 1 7.7783 2.5690 -1.5917 41 1 3.8388 -2.4806 0.0880 42 1 5.1904 -1.3250 -0.0135 43 1 3.9334 -1.1880 2.1681 44 1 3.9158 0.3402 1.2551 45 1 1.9181 0.9833 2.5585 46 1 0.4159 0.0355 2.4429 47 1 2.4116 -1.5963 3.5968 48 1 2.8508 -2.6725 6.7235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185410984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:11 Heat of formation + Delta-G solvation = 43.367312 kcal Electronic energy + Delta-G solvation = -29180.932949 eV Core-core repulsion = 25239.504336 eV Total energy + Delta-G solvation = -3941.428613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.04491 -41.36643 -39.27825 -38.32108 -36.59470 -35.41618 -34.49536 -33.42777 -32.65293 -32.03202 -28.51760 -28.14030 -26.04773 -25.21647 -24.99208 -23.72619 -23.33064 -22.80520 -22.21264 -21.05718 -20.15346 -19.19222 -18.85845 -18.65476 -17.82079 -17.28408 -16.74507 -16.66485 -16.21495 -15.72293 -15.65899 -15.53497 -15.22253 -14.90224 -14.79111 -14.50360 -14.28375 -14.02142 -13.86692 -13.32006 -13.15161 -12.94639 -12.92754 -12.82488 -12.71909 -12.68903 -12.47719 -12.23605 -12.14168 -11.98104 -11.89652 -11.64849 -11.61519 -11.53102 -11.38242 -11.18268 -11.06659 -10.86787 -10.30029 -9.71238 -8.95511 -7.94424 -5.21634 -0.03438 0.69215 1.47462 1.47790 1.55774 1.57606 1.71211 2.03174 2.56367 2.79601 3.09788 3.16171 3.39414 3.41642 3.62749 3.70239 3.73722 3.79880 3.88313 3.94804 4.00046 4.16913 4.23399 4.29108 4.36991 4.46889 4.52838 4.61715 4.67720 4.70727 4.72846 4.74167 4.79623 4.85453 4.91895 4.99105 5.05695 5.10536 5.12254 5.17623 5.21421 5.27582 5.36371 5.47300 5.52085 5.59809 6.22415 6.28893 6.93743 7.05560 7.35678 8.12369 8.36210 9.29073 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.002784 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.013553 B =10053.422355 C =10828.450952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.603 3.397 7 O -0.565 6.565 8 C -0.274 4.274 9 C 0.034 3.966 10 N -0.371 5.371 11 O 0.088 5.912 12 C 0.078 3.922 13 C -0.118 4.118 14 C -0.144 4.144 15 C -0.152 4.152 16 C 0.106 3.894 17 C -0.119 4.119 18 C -0.078 4.078 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.008 0.992 46 H 0.028 0.972 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 5.577 -21.855 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.083 0.917 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.391 3.609 7 O -0.445 6.445 8 C -0.281 4.281 9 C -0.149 4.149 10 N -0.078 5.078 11 O 0.030 5.970 12 C 0.014 3.986 13 C -0.137 4.137 14 C -0.181 4.181 15 C -0.189 4.189 16 C -0.016 4.016 17 C -0.157 4.157 18 C -0.097 4.097 19 H 0.091 0.909 20 C 0.030 3.970 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.046 0.954 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.760 5.381 -21.991 23.933 hybrid contribution -0.876 -0.168 1.440 1.694 sum 6.885 5.212 -20.550 22.291 Atomic orbital electron populations 1.21798 0.93180 1.02747 1.02398 1.21276 0.97012 0.99221 0.93201 0.91743 1.21686 0.77727 1.01910 0.98644 1.47962 1.07317 1.59752 1.17542 1.16932 0.84206 0.77753 0.81969 1.90749 1.74855 1.43351 1.35554 1.21919 0.95066 0.98384 1.12748 1.26834 0.87592 1.00687 0.99747 1.73670 1.20735 0.98605 1.14765 1.84526 1.31635 1.22769 1.58036 1.24056 0.84109 0.95637 0.94748 1.20766 1.01639 0.84772 1.06562 1.23232 0.94830 1.01753 0.98302 1.23238 1.02137 0.96118 0.97442 1.22089 0.98812 0.98053 0.82622 1.21805 0.95731 1.00649 0.97563 1.21231 0.94889 0.99928 0.93671 0.90864 1.20889 0.96857 0.93491 0.85741 1.42561 1.65236 1.29105 1.01569 1.19624 1.26628 1.05906 0.85240 0.91082 1.25479 1.01740 0.98046 1.01284 1.69793 1.44411 1.18526 1.29009 0.85147 0.77108 0.77572 0.80390 1.19295 1.22014 1.22137 0.92587 0.91052 0.91845 0.89068 0.89539 0.75638 0.84151 0.87373 0.85328 0.85800 0.88298 0.88889 0.88825 0.91465 0.92824 0.97379 0.95401 0.79169 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.82 71.98 0.64 -2.43 16 2 C -0.09 -2.08 2.40 -10.86 -0.03 -2.11 16 3 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.12 2.65 5.70 86.22 0.49 3.14 16 5 N -0.59 -13.70 2.98 -823.65 -2.45 -16.16 16 6 C 0.60 15.48 7.57 86.66 0.66 16.13 16 7 O -0.56 -17.13 15.45 -4.08 -0.06 -17.20 16 8 C -0.27 -6.33 5.56 -18.74 -0.10 -6.43 16 9 C 0.03 0.69 10.06 87.29 0.88 1.57 16 10 N -0.37 -8.63 12.01 -54.20 -0.65 -9.28 16 11 O 0.09 1.95 10.86 76.99 0.84 2.79 16 12 C 0.08 1.69 7.00 25.48 0.18 1.87 16 13 C -0.12 -2.04 6.03 -11.54 -0.07 -2.11 16 14 C -0.14 -1.62 10.18 30.59 0.31 -1.31 16 15 C -0.15 -1.97 10.23 30.59 0.31 -1.66 16 16 C 0.11 2.32 5.60 86.36 0.48 2.80 16 17 C -0.12 -3.38 5.25 30.67 0.16 -3.22 16 18 C -0.08 -2.29 1.73 -10.76 -0.02 -2.30 16 19 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.16 5.99 5.41 86.38 0.47 6.46 16 21 N -0.74 -36.46 5.32 -343.45 -1.83 -38.29 16 22 C -0.24 -13.34 9.99 84.03 0.84 -12.51 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 25 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 26 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 30 H 0.06 1.35 6.29 -2.39 -0.02 1.33 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.09 2.07 7.00 -2.39 -0.02 2.05 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.23 3.25 7.35 -2.91 -0.02 3.23 16 36 H 0.14 2.72 7.23 -2.39 -0.02 2.70 16 37 H 0.11 1.17 8.02 -2.39 -0.02 1.15 16 38 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.90 4.57 -2.39 -0.01 1.89 16 43 H 0.07 2.24 7.15 -2.39 -0.02 2.23 16 44 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.03 1.07 6.14 -2.39 -0.01 1.06 16 47 H 0.38 19.34 6.85 -92.71 -0.63 18.71 16 48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -68.56 383.87 4.16 -64.40 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.35 Total: 29.39 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.66 Total: -5.78 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.65 Total: -121.39 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.77 Total: -14.41 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.56 4.16 -64.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.770 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds