Wall clock time and date at job start Tue Mar 31 2020 17:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35648 * 117.00085 * 2 1 4 4 C 1.39343 * 120.53951 * 359.97438 * 3 2 1 5 5 C 1.38305 * 118.43807 * 180.02562 * 4 3 2 6 6 C 1.38764 * 119.44818 * 359.97438 * 5 4 3 7 7 N 1.31377 * 121.06227 * 359.74638 * 6 5 4 8 8 C 1.32852 * 121.70218 * 0.52655 * 7 6 5 9 9 C 1.47833 * 119.78923 * 179.75564 * 8 7 6 10 10 O 1.21555 * 120.00161 * 172.14718 * 9 8 7 11 11 N 1.34778 * 119.99389 * 352.13996 * 9 8 7 12 12 C 1.46930 * 120.62421 * 172.14722 * 11 9 8 13 13 C 1.53196 * 108.76908 * 126.41706 * 12 11 9 14 14 C 1.53037 * 109.31673 * 54.63505 * 13 12 11 15 15 H 1.09003 * 109.45786 * 58.63642 * 14 13 12 16 16 C 1.52999 * 109.46180 * 178.61028 * 14 13 12 17 17 N 1.46494 * 109.47299 * 294.99993 * 16 14 13 18 18 C 1.36940 * 120.00222 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99679 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00301 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00468 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99808 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47333 * 89.99761 * 22 20 18 24 24 H 1.48506 * 109.47041 * 209.99996 * 22 20 18 25 25 H 1.48498 * 109.47228 * 329.99862 * 22 20 18 26 26 C 1.53042 * 109.53718 * 298.63256 * 14 13 12 27 27 H 1.08997 * 109.49880 * 301.41435 * 26 14 13 28 28 C 1.53003 * 109.49809 * 181.31291 * 26 14 13 29 29 C 1.46917 * 120.63434 * 352.17327 * 11 9 8 30 30 H 1.08995 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46637 * 299.99438 * 1 2 3 32 32 H 1.08996 * 109.47230 * 60.00144 * 1 2 3 33 33 H 1.07997 * 120.78223 * 0.03905 * 4 3 2 34 34 H 1.08001 * 120.27083 * 179.97438 * 5 4 3 35 35 H 1.07993 * 119.46862 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.58825 * 6.63431 * 12 11 9 37 37 H 1.08998 * 109.58630 * 246.20162 * 12 11 9 38 38 H 1.09002 * 109.49782 * 294.67648 * 13 12 11 39 39 H 1.08997 * 109.52018 * 174.60179 * 13 12 11 40 40 H 1.08996 * 109.46728 * 174.99699 * 16 14 13 41 41 H 1.08999 * 109.46651 * 55.00175 * 16 14 13 42 42 H 0.97004 * 120.00001 * 359.97438 * 17 16 14 43 43 H 0.96999 * 120.00554 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46883 * 60.00242 * 28 26 14 45 45 H 1.08994 * 109.46883 * 179.97438 * 28 26 14 46 46 H 1.08998 * 109.47034 * 300.00433 * 28 26 14 47 47 H 1.08997 * 109.58826 * 353.37397 * 29 11 9 48 48 H 1.09001 * 109.58962 * 113.65423 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9696 3.5928 -0.0011 6 6 3.3573 3.6012 -0.0005 7 7 4.0419 2.4799 0.0055 8 6 3.4411 1.2950 0.0009 9 6 4.2532 0.0597 0.0025 10 8 3.7151 -1.0212 0.1422 11 7 5.5903 0.1322 -0.1510 12 6 6.4290 -1.0621 0.0189 13 6 7.2949 -1.2384 -1.2325 14 6 8.0802 0.0496 -1.4903 15 1 8.6996 0.2770 -0.6228 16 6 8.9723 -0.1347 -2.7195 17 7 9.9844 -1.1563 -2.4397 18 6 10.9009 -1.4932 -3.3997 19 1 10.8778 -1.0056 -4.3630 20 6 11.8602 -2.4608 -3.1344 21 7 12.7414 -2.7843 -4.0569 22 14 11.9004 -3.3037 -1.4679 23 1 11.0451 -4.5172 -1.5061 24 1 13.2965 -3.6921 -1.1432 25 1 11.3916 -2.3721 -0.4295 26 6 7.1049 1.2030 -1.7365 27 1 6.4681 0.9655 -2.5887 28 6 7.8908 2.4833 -2.0265 29 6 6.2367 1.4070 -0.4909 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 0.2175 2.3527 -0.0003 34 1 1.4194 4.5222 -0.0019 35 1 3.8828 4.5446 -0.0005 36 1 5.7945 -1.9385 0.1506 37 1 7.0696 -0.9376 0.8919 38 1 6.6564 -1.4531 -2.0895 39 1 7.9901 -2.0641 -1.0810 40 1 9.4641 0.8088 -2.9562 41 1 8.3630 -0.4494 -3.5668 42 1 10.0053 -1.5940 -1.5743 43 1 13.4115 -3.4607 -3.8716 44 1 8.5104 2.3367 -2.9112 45 1 7.1958 3.3043 -2.2022 46 1 8.5261 2.7207 -1.1732 47 1 5.4754 2.1597 -0.6954 48 1 6.8597 1.7342 0.3416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185584432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:33 Heat of formation + Delta-G solvation = -1.359465 kcal Electronic energy + Delta-G solvation = -29331.219517 eV Core-core repulsion = 25387.851405 eV Total energy + Delta-G solvation = -3943.368112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.43491 -39.76629 -38.58123 -37.86984 -35.02444 -33.35062 -33.07096 -31.84649 -31.25531 -30.56499 -27.93200 -27.21394 -26.47223 -25.06536 -23.40630 -23.26672 -22.26624 -21.13254 -20.35090 -19.50919 -18.43911 -17.82537 -17.47328 -17.17019 -16.40392 -15.92997 -15.57699 -15.22355 -14.89888 -14.73762 -14.62628 -14.15601 -14.05724 -13.97339 -13.72621 -13.35879 -13.18059 -12.93571 -12.76196 -12.64514 -12.27874 -12.14254 -11.95442 -11.81101 -11.73615 -11.51819 -11.27091 -10.84878 -10.77244 -10.48673 -10.33962 -10.32191 -10.20213 -10.09117 -9.90260 -9.53513 -9.07281 -8.91531 -8.81262 -8.41830 -7.13903 -5.70715 -3.05034 0.26673 0.74075 2.59731 2.69860 2.96155 3.42337 3.45186 3.49546 3.49864 3.84515 4.08093 4.22057 4.45813 4.64498 4.65017 4.68991 4.71893 4.82167 4.97695 5.05174 5.07519 5.11187 5.25221 5.39042 5.47683 5.48598 5.55968 5.60816 5.67111 5.73539 5.78612 5.89798 5.95057 6.00458 6.08874 6.23437 6.28811 6.32302 6.40579 6.48176 6.54026 6.70887 6.80573 6.85950 6.94218 7.25986 7.50506 8.06768 8.18488 8.48807 9.28679 10.01342 10.21933 11.48041 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002735 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.270468 B =10233.648733 C =11057.833809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.138 3.862 4 C -0.174 4.174 5 C -0.107 4.107 6 C 0.052 3.948 7 N -0.408 5.408 8 C 0.048 3.952 9 C 0.569 3.431 10 O -0.522 6.522 11 N -0.589 5.589 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.094 4.094 15 H 0.070 0.930 16 C 0.161 3.839 17 N -0.756 5.756 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.937 5.937 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.098 4.098 27 H 0.069 0.931 28 C -0.144 4.144 29 C 0.077 3.923 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.024 0.976 42 H 0.360 0.640 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.146 0.854 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.789 16.008 11.049 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.182 6.182 3 C 0.087 3.913 4 C -0.201 4.201 5 C -0.127 4.127 6 C -0.108 4.108 7 N -0.120 5.120 8 C -0.090 4.090 9 C 0.355 3.645 10 O -0.398 6.398 11 N -0.321 5.321 12 C -0.013 4.013 13 C -0.163 4.163 14 C -0.113 4.113 15 H 0.088 0.912 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.585 5.585 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.118 4.118 27 H 0.088 0.912 28 C -0.202 4.202 29 C -0.045 4.045 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.193 0.807 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.162 0.838 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.980 15.169 10.928 32.824 hybrid contribution -0.857 -0.461 1.085 1.458 sum -27.837 14.707 12.013 33.698 Atomic orbital electron populations 1.23237 0.78391 1.04854 1.01188 1.86434 1.21008 1.24464 1.86250 1.20016 0.92232 0.85850 0.93230 1.21782 1.01166 0.91809 1.05316 1.22195 0.95738 0.98432 0.96341 1.22924 0.91590 0.96826 0.99431 1.67693 1.37393 0.97660 1.09262 1.20777 0.88668 0.92919 1.06637 1.17616 0.81902 0.87087 0.77867 1.90819 1.71107 1.27901 1.49941 1.47924 1.05249 1.11222 1.67709 1.21740 0.93265 0.88060 0.98205 1.21921 0.98408 0.98644 0.97331 1.21420 0.96074 0.94031 0.99811 0.91164 1.20742 0.89585 0.92246 0.94038 1.42749 1.35943 1.46334 1.15111 1.19070 1.05788 1.17062 0.95051 0.89327 1.24665 0.97912 0.99414 0.97354 1.69700 1.20183 1.35428 1.33188 0.86559 0.76940 0.79895 0.85249 1.21061 1.21807 1.20304 1.21489 0.96659 0.95591 0.98059 0.91207 1.21801 0.99864 0.96098 1.02434 1.23112 0.98821 0.86201 0.96365 0.87518 0.92469 0.92432 0.83592 0.83888 0.81519 0.89194 0.91510 0.91477 0.90237 0.95066 0.95809 0.80733 0.93151 0.91478 0.93024 0.92596 0.83771 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.83 101.05 0.99 1.10 16 2 O -0.27 -3.11 8.59 -40.46 -0.35 -3.46 16 3 C 0.14 1.46 6.70 -38.55 -0.26 1.20 16 4 C -0.17 -1.17 9.13 -39.15 -0.36 -1.53 16 5 C -0.11 -0.57 10.10 -39.36 -0.40 -0.97 16 6 C 0.05 0.35 11.17 -17.55 -0.20 0.16 16 7 N -0.41 -4.17 6.08 -9.71 -0.06 -4.23 16 8 C 0.05 0.60 6.61 -82.88 -0.55 0.05 16 9 C 0.57 8.68 7.65 -12.33 -0.09 8.58 16 10 O -0.52 -9.37 14.61 -16.50 -0.24 -9.61 16 11 N -0.59 -8.42 2.97 -173.89 -0.52 -8.94 16 12 C 0.11 1.60 6.44 -3.71 -0.02 1.57 16 13 C -0.12 -2.00 5.25 -26.61 -0.14 -2.14 16 14 C -0.09 -1.51 1.73 -90.58 -0.16 -1.66 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.16 3.19 5.41 -4.05 -0.02 3.17 16 17 N -0.76 -18.43 5.12 -59.92 -0.31 -18.73 16 18 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -30.07 13.97 55.49 0.78 -29.30 16 22 Si 0.88 22.66 27.74 -169.99 -4.71 17.94 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 26 C -0.10 -1.31 2.41 -90.50 -0.22 -1.53 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 C -0.14 -1.71 8.82 37.16 0.33 -1.39 16 29 C 0.08 0.96 5.18 -3.71 -0.02 0.94 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.24 7.70 -51.93 -0.40 -0.16 16 32 H 0.06 0.24 7.70 -51.93 -0.40 -0.16 16 33 H 0.15 0.56 6.46 -52.49 -0.34 0.22 16 34 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 35 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.37 7.15 -51.93 -0.37 1.00 16 40 H 0.03 0.62 6.14 -51.93 -0.32 0.31 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.36 8.56 4.71 -40.82 -0.19 8.36 16 43 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 44 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.15 1.67 3.96 -87.47 -0.35 1.32 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -36.45 375.10 -8.42 -44.87 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.30 Total: 5.39 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.36 Total: 0.40 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.11 Total: -61.20 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.59 Total: -13.06 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.45 -8.42 -44.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185584432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.515 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds