Wall clock time and date at job start Tue Mar 31 2020 17:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.52348 * 2 1 4 4 C 1.53199 * 109.51039 * 120.07232 * 2 1 3 5 5 N 1.46924 * 108.76154 * 65.30514 * 4 2 1 6 6 C 1.34777 * 120.62982 * 233.59385 * 5 4 2 7 7 O 1.21279 * 120.00003 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.46501 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.35756 * 119.62644 * 90.00084 * 9 8 6 11 11 C 1.35345 * 120.70246 * 179.97438 * 10 9 8 12 12 C 1.40195 * 119.95104 * 0.02562 * 11 10 9 13 13 C 1.36401 * 119.26244 * 0.02562 * 12 11 10 14 14 C 1.34664 * 119.62364 * 269.72821 * 9 8 6 15 15 O 1.22063 * 119.98562 * 359.97438 * 14 9 8 16 16 C 1.46925 * 118.73999 * 53.61306 * 5 4 2 17 17 C 1.53188 * 108.77775 * 306.39463 * 16 5 4 18 18 C 1.53039 * 109.49941 * 239.92295 * 2 1 3 19 19 H 1.09001 * 109.46020 * 181.40828 * 18 2 1 20 20 C 1.52993 * 109.46337 * 61.42920 * 18 2 1 21 21 N 1.46496 * 109.47551 * 174.97346 * 20 18 2 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09002 * 109.46932 * 180.08205 * 1 2 3 31 31 H 1.09007 * 109.47204 * 300.07699 * 1 2 3 32 32 H 1.08997 * 109.47708 * 60.08097 * 1 2 3 33 33 H 1.08994 * 109.58560 * 305.52452 * 4 2 1 34 34 H 1.09000 * 109.59428 * 185.08901 * 4 2 1 35 35 H 1.08993 * 109.47312 * 299.99815 * 8 6 5 36 36 H 1.09003 * 109.46892 * 60.00214 * 8 6 5 37 37 H 1.07999 * 119.64985 * 359.97438 * 10 9 8 38 38 H 1.08014 * 120.02631 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.36597 * 179.97438 * 12 11 10 40 40 H 1.07995 * 120.34375 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.58755 * 186.60182 * 16 5 4 42 42 H 1.09001 * 109.58407 * 66.18344 * 16 5 4 43 43 H 1.09001 * 109.49775 * 294.68132 * 17 16 5 44 44 H 1.09008 * 109.49634 * 174.58485 * 17 16 5 45 45 H 1.09004 * 109.46862 * 54.97544 * 20 18 2 46 46 H 1.09004 * 109.46998 * 294.98022 * 20 18 2 47 47 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7236 1.2497 5 7 1.6516 -2.1379 1.1697 6 6 0.9748 -2.7216 2.1786 7 8 0.6817 -2.0785 3.1641 8 6 0.5824 -4.1734 2.0819 9 7 -0.1385 -4.5662 3.2953 10 6 -1.4890 -4.4367 3.3452 11 6 -2.1769 -4.7933 4.4549 12 6 -1.4938 -5.3021 5.5684 13 6 -0.1369 -5.4305 5.5169 14 6 0.5454 -5.0568 4.3465 15 8 1.7589 -5.1724 4.2845 16 6 2.0137 -2.9038 -0.0306 17 6 1.5027 -2.1556 -1.2658 18 6 2.0408 -0.7230 -1.2484 19 1 3.1305 -0.7445 -1.2352 20 6 1.5606 0.0170 -2.4984 21 7 2.1472 -0.6034 -3.6888 22 6 1.8584 -0.1077 -4.9322 23 1 1.1983 0.7409 -5.0351 24 6 2.4137 -0.6960 -6.0601 25 7 2.1364 -0.2192 -7.2552 26 14 3.5558 -2.1634 -5.8819 27 1 4.9558 -1.6873 -5.7453 28 1 3.1776 -2.9413 -4.6748 29 1 3.4421 -3.0280 -7.0838 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8906 33 1 1.6012 -0.2728 2.1389 34 1 3.1278 -0.6462 1.2978 35 1 -0.0611 -4.3188 1.2143 36 1 1.4781 -4.7856 1.9767 37 1 -2.0200 -4.0449 2.4903 38 1 -3.2512 -4.6852 4.4828 39 1 -2.0360 -5.5883 6.4575 40 1 0.4068 -5.8208 6.3644 41 1 1.5550 -3.8916 0.0140 42 1 3.0976 -3.0043 -0.0867 43 1 0.4130 -2.1351 -1.2538 44 1 1.8476 -2.6628 -2.1669 45 1 1.8691 1.0611 -2.4434 46 1 0.4736 -0.0380 -2.5581 47 1 2.7397 -1.3658 -3.5963 48 1 2.5249 -0.6301 -8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185651035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:57 Heat of formation + Delta-G solvation = -40.183943 kcal Electronic energy + Delta-G solvation = -29230.832805 eV Core-core repulsion = 25285.781137 eV Total energy + Delta-G solvation = -3945.051668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55897 -41.30072 -39.30583 -37.96286 -36.71873 -35.57821 -34.87557 -33.44435 -32.25382 -30.89355 -29.95084 -28.73274 -27.46265 -25.29963 -24.80170 -24.19682 -23.87358 -22.80561 -21.25182 -20.00204 -19.23615 -18.67514 -18.48303 -18.27694 -17.36965 -16.92852 -16.80629 -16.47911 -16.14599 -15.98522 -15.70445 -15.37610 -15.22479 -15.11789 -14.89790 -14.79760 -14.52441 -14.04260 -13.82000 -13.67190 -13.42797 -13.25788 -13.21085 -13.00482 -12.87288 -12.74236 -12.68844 -12.47241 -12.14837 -12.06490 -11.84091 -11.61334 -11.55165 -11.33827 -11.29080 -11.09673 -10.93443 -10.71702 -9.72128 -9.25678 -8.97956 -8.00585 -5.33925 -0.09310 0.93262 1.38647 1.40292 1.42410 1.44188 1.51446 1.98354 2.50784 2.70063 3.30476 3.31038 3.54807 3.62660 3.70614 3.76336 3.79583 3.99140 4.01320 4.08985 4.11306 4.20129 4.23980 4.35441 4.37763 4.45855 4.51884 4.63317 4.70682 4.72570 4.79340 4.81616 4.96424 5.02604 5.05028 5.15763 5.17927 5.18087 5.23712 5.28664 5.39242 5.47881 5.59428 5.64591 5.78244 6.04749 6.23124 6.24870 6.91848 6.98747 7.10970 7.87006 8.07120 9.21124 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.002543 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.986107 B =11007.835965 C =11405.268597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.503 3.497 7 O -0.575 6.575 8 C 0.068 3.932 9 N -0.481 5.481 10 C 0.132 3.868 11 C -0.230 4.230 12 C 0.007 3.993 13 C -0.284 4.284 14 C 0.498 3.502 15 O -0.612 6.612 16 C 0.105 3.895 17 C -0.127 4.127 18 C -0.084 4.084 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.233 4.233 23 H 0.052 0.948 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.956 3.044 27 H -0.282 1.282 28 H -0.240 1.240 29 H -0.299 1.299 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.168 0.832 36 H 0.128 0.872 37 H 0.196 0.804 38 H 0.182 0.818 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.016 0.984 46 H 0.027 0.973 47 H 0.367 0.633 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 -11.897 25.166 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.291 3.709 7 O -0.455 6.455 8 C -0.057 4.057 9 N -0.190 5.190 10 C 0.006 3.994 11 C -0.252 4.252 12 C -0.014 4.014 13 C -0.305 4.305 14 C 0.304 3.696 15 O -0.500 6.500 16 C -0.017 4.017 17 C -0.165 4.165 18 C -0.103 4.103 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.364 4.364 23 H 0.070 0.930 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.783 3.217 27 H -0.209 1.209 28 H -0.164 1.164 29 H -0.226 1.226 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.145 0.855 37 H 0.213 0.787 38 H 0.199 0.801 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.201 0.799 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.177 -11.474 25.479 29.412 hybrid contribution 1.012 -0.221 -0.663 1.230 sum -8.165 -11.695 24.816 28.623 Atomic orbital electron populations 1.21806 0.94574 1.01967 1.01365 1.21378 0.96808 0.99665 0.92993 0.89419 1.21640 0.99948 0.80156 0.98449 1.48094 1.54900 1.11813 1.18149 1.21042 0.77603 0.89871 0.82415 1.90711 1.56502 1.65998 1.32262 1.22082 1.02223 0.92876 0.88520 1.45111 1.08151 1.50801 1.14908 1.22686 0.81328 0.93625 1.01720 1.21187 1.02833 1.08353 0.92799 1.21886 0.92897 0.87715 0.98933 1.22116 0.96807 1.13001 0.98608 1.17630 0.87656 0.79478 0.84877 1.90904 1.15314 1.60663 1.83110 1.22040 1.01835 0.95403 0.82442 1.21956 1.01985 0.94974 0.97576 1.21260 1.00456 0.95418 0.93197 0.90788 1.20826 0.95924 0.94780 0.84913 1.42692 1.57788 1.37488 1.02102 1.19015 1.22560 1.10646 0.84171 0.93025 1.25566 1.02776 1.02957 0.94600 1.69903 1.50374 1.45382 0.98100 0.85392 0.78808 0.79618 0.77859 1.20875 1.16354 1.22561 0.92332 0.92869 0.92768 0.90153 0.90623 0.81492 0.85451 0.78723 0.80050 0.81416 0.83801 0.86933 0.89938 0.90503 0.90867 0.96581 0.95479 0.79882 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.38 71.98 0.60 -2.32 16 2 C -0.09 -1.86 2.72 -10.72 -0.03 -1.89 16 3 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 4 C 0.12 2.49 5.83 86.37 0.50 2.99 16 5 N -0.60 -11.48 2.41 -818.91 -1.97 -13.45 16 6 C 0.50 11.05 7.76 87.66 0.68 11.73 16 7 O -0.58 -17.45 15.84 -3.03 -0.05 -17.50 16 8 C 0.07 1.05 4.17 85.63 0.36 1.41 16 9 N -0.48 -8.86 2.07 -655.07 -1.36 -10.22 16 10 C 0.13 1.44 10.28 83.42 0.86 2.29 16 11 C -0.23 -1.94 10.01 22.08 0.22 -1.72 16 12 C 0.01 0.08 10.10 22.32 0.23 0.31 16 13 C -0.28 -5.57 9.99 22.40 0.22 -5.34 16 14 C 0.50 12.87 7.40 84.82 0.63 13.50 16 15 O -0.61 -21.20 16.64 -5.52 -0.09 -21.29 16 16 C 0.10 1.60 6.34 86.36 0.55 2.15 16 17 C -0.13 -2.60 4.90 30.67 0.15 -2.45 16 18 C -0.08 -2.06 1.96 -10.77 -0.02 -2.08 16 19 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 20 C 0.16 5.56 5.19 86.38 0.45 6.01 16 21 N -0.75 -32.87 5.12 -343.47 -1.76 -34.63 16 22 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 23 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 24 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 25 N -0.99 -62.54 13.97 21.65 0.30 -62.24 16 26 Si 0.96 43.47 27.74 68.60 1.90 45.37 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 28 H -0.24 -9.27 6.52 99.48 0.65 -8.62 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 30 H 0.06 1.16 5.97 -2.39 -0.01 1.15 16 31 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 1.24 6.58 -2.39 -0.02 1.23 16 33 H 0.08 1.89 7.00 -2.39 -0.02 1.88 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.17 0.96 7.56 -2.39 -0.02 0.94 16 36 H 0.13 2.10 7.18 -2.39 -0.02 2.08 16 37 H 0.20 0.63 8.04 -2.91 -0.02 0.60 16 38 H 0.18 0.24 8.06 -2.90 -0.02 0.21 16 39 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 41 H 0.11 1.04 5.93 -2.39 -0.01 1.03 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.53 6.33 -2.39 -0.02 1.52 16 44 H 0.07 1.71 7.15 -2.38 -0.02 1.70 16 45 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.03 0.96 6.74 -2.39 -0.02 0.95 16 47 H 0.37 14.88 4.71 -92.71 -0.44 14.44 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -86.02 378.12 4.20 -81.83 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.48 Total: 23.03 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.74 Total: 9.09 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.79 Total: -120.53 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.14 Total: -38.79 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Total: -86.02 4.20 -81.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -86.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds