Wall clock time and date at job start Tue Mar 31 2020 17:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50081 * 2 1 4 4 C 1.53197 * 109.49888 * 239.90384 * 2 1 3 5 5 N 1.46957 * 108.89063 * 185.49515 * 4 2 1 6 6 C 1.34780 * 120.65462 * 233.53473 * 5 4 2 7 7 O 1.21280 * 119.99699 * 359.81776 * 6 5 4 8 8 C 1.50691 * 120.00213 * 179.81159 * 6 5 4 9 9 N 1.46501 * 109.47244 * 179.97438 * 8 6 5 10 10 C 1.35764 * 119.62218 * 90.00186 * 9 8 6 11 11 C 1.35352 * 120.70272 * 179.97438 * 10 9 8 12 12 C 1.40187 * 119.94868 * 0.02562 * 11 10 9 13 13 C 1.36406 * 119.26462 * 359.97438 * 12 11 10 14 14 C 1.34660 * 119.62955 * 269.73554 * 9 8 6 15 15 O 1.22058 * 119.98129 * 359.97129 * 14 9 8 16 16 C 1.46926 * 118.71783 * 53.35357 * 5 4 2 17 17 C 1.53191 * 108.89109 * 306.64359 * 16 5 4 18 18 C 1.53040 * 109.49694 * 120.06726 * 2 1 3 19 19 H 1.08994 * 109.45892 * 61.29609 * 18 2 1 20 20 C 1.52997 * 109.44905 * 301.32471 * 18 2 1 21 21 N 1.46494 * 109.47219 * 174.93762 * 20 18 2 22 22 C 1.36934 * 120.00358 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99664 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00582 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99350 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00130 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47302 * 59.99994 * 26 24 22 28 28 H 1.48507 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47458 * 300.00116 * 26 24 22 30 30 H 1.09000 * 109.47211 * 299.94005 * 1 2 3 31 31 H 1.09002 * 109.47144 * 59.93134 * 1 2 3 32 32 H 1.08997 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58145 * 305.20506 * 4 2 1 34 34 H 1.08997 * 109.58684 * 65.48028 * 4 2 1 35 35 H 1.08998 * 109.47452 * 300.00605 * 8 6 5 36 36 H 1.09005 * 109.46717 * 60.00766 * 8 6 5 37 37 H 1.08000 * 119.64984 * 0.02562 * 10 9 8 38 38 H 1.07996 * 120.02178 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.37082 * 179.97438 * 12 11 10 40 40 H 1.08005 * 120.34760 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.58861 * 186.78362 * 16 5 4 42 42 H 1.08996 * 109.58519 * 66.50253 * 16 5 4 43 43 H 1.09003 * 109.49294 * 174.51508 * 17 16 5 44 44 H 1.09001 * 109.49969 * 294.57596 * 17 16 5 45 45 H 1.09002 * 109.47309 * 294.94335 * 20 18 2 46 46 H 1.08999 * 109.46605 * 54.94148 * 20 18 2 47 47 H 0.96998 * 120.00334 * 0.02562 * 21 20 18 48 48 H 0.97000 * 119.99602 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5048 -0.8326 -1.1710 6 6 4.2816 -0.3922 -2.1806 7 8 3.7738 0.0964 -3.1676 8 6 5.7809 -0.5068 -2.0828 9 7 6.3925 0.0373 -3.2978 10 6 6.7215 1.3534 -3.3520 11 6 7.2880 1.8789 -4.4633 12 6 7.5399 1.0614 -5.5739 13 6 7.2087 -0.2606 -5.5176 14 6 6.6270 -0.7747 -4.3462 15 8 6.3306 -1.9569 -4.2803 16 6 4.1052 -1.4268 0.0311 17 6 3.5708 -0.6947 1.2661 18 6 2.0407 -0.7228 1.2485 19 1 1.6966 -1.7569 1.2357 20 6 1.5037 -0.0223 2.4982 21 7 1.8917 -0.7824 3.6889 22 6 1.5201 -0.3446 4.9320 23 1 0.9413 0.5615 5.0346 24 6 1.8881 -1.0646 6.0603 25 7 2.5947 -2.1679 5.9353 26 14 1.3817 -0.4667 7.7560 27 1 -0.0999 -0.4052 7.8372 28 1 1.8948 -1.4059 8.7856 29 1 1.9470 0.8857 7.9934 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7219 -1.2975 34 1 1.7615 -0.1599 -2.1390 35 1 6.1325 0.0534 -1.2164 36 1 6.0589 -1.5553 -1.9749 37 1 6.5299 1.9875 -2.4991 38 1 7.5449 2.9274 -4.4946 39 1 7.9913 1.4737 -6.4642 40 1 7.3947 -0.9063 -6.3632 41 1 5.1896 -1.3248 -0.0134 42 1 3.8397 -2.4823 0.0886 43 1 3.9334 -1.1892 2.1673 44 1 3.9164 0.3390 1.2543 45 1 1.9194 0.9836 2.5578 46 1 0.4167 0.0365 2.4429 47 1 2.4118 -1.5960 3.5968 48 1 2.8516 -2.6712 6.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185651036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:00 Heat of formation + Delta-G solvation = -22.846560 kcal Electronic energy + Delta-G solvation = -28878.050876 eV Core-core repulsion = 24933.751013 eV Total energy + Delta-G solvation = -3944.299862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75285 -40.18978 -38.10416 -37.09537 -35.09982 -34.83820 -33.65438 -32.05165 -30.40872 -30.20539 -29.16258 -26.97227 -26.30723 -24.22749 -23.79753 -23.01585 -22.58201 -21.40478 -20.15546 -19.31767 -17.95062 -17.64843 -17.47621 -17.07110 -16.63585 -15.99933 -15.57162 -15.35917 -14.92825 -14.74094 -14.50775 -14.38512 -14.01953 -13.92160 -13.60941 -13.55153 -13.02054 -12.81545 -12.63585 -12.54335 -12.45339 -12.19305 -12.11274 -11.97561 -11.87912 -11.67904 -11.04131 -10.95299 -10.84527 -10.76841 -10.46009 -10.36331 -10.25102 -10.18642 -10.03887 -9.82227 -9.67235 -8.89832 -8.72332 -8.23852 -6.94744 -5.80566 -3.08619 0.55677 1.64317 2.16137 2.33644 2.84741 3.40996 3.44822 3.45826 3.46502 4.15594 4.23632 4.29658 4.54938 4.56652 4.67122 4.77524 4.86529 4.89188 4.90890 4.97916 5.02397 5.06139 5.21762 5.36416 5.45395 5.53493 5.63684 5.64523 5.73370 5.76476 5.79773 5.85156 5.91689 5.99167 6.01328 6.16002 6.20866 6.21540 6.26549 6.36201 6.43734 6.55750 6.78276 6.78529 6.87514 7.18171 7.66148 7.78849 7.90227 8.38928 9.49999 10.07968 10.42428 11.42323 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002323 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.364062 B =12051.879105 C =12565.133997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.505 3.495 7 O -0.535 6.535 8 C 0.069 3.931 9 N -0.479 5.479 10 C 0.144 3.856 11 C -0.234 4.234 12 C -0.015 4.015 13 C -0.243 4.243 14 C 0.519 3.481 15 O -0.551 6.551 16 C 0.102 3.898 17 C -0.126 4.126 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 7.416 -20.425 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.291 3.709 7 O -0.412 6.412 8 C -0.056 4.056 9 N -0.190 5.190 10 C 0.017 3.983 11 C -0.257 4.257 12 C -0.037 4.037 13 C -0.265 4.265 14 C 0.321 3.679 15 O -0.434 6.434 16 C -0.021 4.021 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.720 6.966 -20.744 23.556 hybrid contribution -0.111 0.121 1.124 1.136 sum 8.609 7.086 -19.620 22.567 Atomic orbital electron populations 1.21832 0.94278 1.02291 1.02097 1.21452 0.96231 0.99813 0.94061 0.90928 1.21737 0.78239 1.01145 0.99247 1.48108 1.07275 1.60277 1.17880 1.20565 0.88945 0.78318 0.83097 1.90725 1.74950 1.44849 1.30680 1.21894 0.91848 1.04594 0.87267 1.45084 1.49470 1.09076 1.15338 1.21951 0.92670 0.83806 0.99881 1.20626 1.09828 1.01527 0.93764 1.21436 0.91556 0.93096 0.97586 1.22084 1.08150 0.97225 0.99022 1.17159 0.80717 0.86418 0.83605 1.90962 1.55119 1.15453 1.81833 1.21965 0.97648 0.98188 0.84266 1.21943 0.96263 1.01036 0.97122 1.21346 0.94599 1.00336 0.94568 0.90842 1.20747 0.96728 0.94003 0.85591 1.42365 1.65454 1.28957 1.00835 1.19174 1.27784 1.06219 0.83841 0.91354 1.24723 1.00913 0.97525 0.97815 1.69636 1.42691 1.17274 1.28709 0.86277 0.78083 0.77639 0.84241 1.21301 1.21692 1.21314 0.91228 0.92991 0.92436 0.91301 0.89245 0.85860 0.85123 0.82204 0.83680 0.84806 0.83480 0.90179 0.90513 0.88996 0.91713 0.96606 0.95780 0.78317 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.19 2.42 -90.50 -0.22 -1.41 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.45 5.71 -3.69 -0.02 1.42 16 5 N -0.60 -7.16 2.98 -172.75 -0.51 -7.67 16 6 C 0.50 6.46 7.77 -10.99 -0.09 6.38 16 7 O -0.54 -8.77 15.85 5.56 0.09 -8.69 16 8 C 0.07 0.67 4.17 -5.20 -0.02 0.65 16 9 N -0.48 -5.10 2.07 -121.07 -0.25 -5.35 16 10 C 0.14 1.10 10.28 -16.84 -0.17 0.92 16 11 C -0.23 -1.54 10.01 -39.88 -0.40 -1.94 16 12 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 13 C -0.24 -2.50 9.99 -39.38 -0.39 -2.90 16 14 C 0.52 6.90 7.40 -15.45 -0.11 6.79 16 15 O -0.55 -9.39 16.63 4.87 0.08 -9.31 16 16 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 17 C -0.13 -1.64 5.25 -26.61 -0.14 -1.78 16 18 C -0.09 -1.30 1.73 -90.58 -0.16 -1.46 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 2.93 5.41 -4.05 -0.02 2.91 16 21 N -0.73 -17.52 5.32 -59.91 -0.32 -17.84 16 22 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 26 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.17 7.02 -51.93 -0.36 0.81 16 35 H 0.12 0.73 7.56 -51.93 -0.39 0.33 16 36 H 0.13 1.28 7.18 -51.93 -0.37 0.91 16 37 H 0.16 0.73 8.04 -52.49 -0.42 0.30 16 38 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 41 H 0.08 0.63 5.93 -51.93 -0.31 0.33 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.40 7.15 -51.93 -0.37 1.03 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.46 6.14 -51.93 -0.32 0.15 16 47 H 0.38 9.54 6.85 -40.82 -0.28 9.26 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -36.06 385.27 -8.85 -44.91 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.35 Total: 6.28 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.09 Total: 1.61 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.36 Total: -57.56 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.06 -8.85 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.065 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds