Wall clock time and date at job start Tue Mar 31 2020 17:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50081 * 2 1 4 4 C 1.53197 * 109.49888 * 239.90384 * 2 1 3 5 5 N 1.46957 * 108.89063 * 185.49515 * 4 2 1 6 6 C 1.34780 * 120.65462 * 233.53473 * 5 4 2 7 7 O 1.21280 * 119.99699 * 359.81776 * 6 5 4 8 8 C 1.50691 * 120.00213 * 179.81159 * 6 5 4 9 9 N 1.46501 * 109.47244 * 179.97438 * 8 6 5 10 10 C 1.35764 * 119.62218 * 90.00186 * 9 8 6 11 11 C 1.35352 * 120.70272 * 179.97438 * 10 9 8 12 12 C 1.40187 * 119.94868 * 0.02562 * 11 10 9 13 13 C 1.36406 * 119.26462 * 359.97438 * 12 11 10 14 14 C 1.34660 * 119.62955 * 269.73554 * 9 8 6 15 15 O 1.22058 * 119.98129 * 359.97129 * 14 9 8 16 16 C 1.46926 * 118.71783 * 53.35357 * 5 4 2 17 17 C 1.53191 * 108.89109 * 306.64359 * 16 5 4 18 18 C 1.53040 * 109.49694 * 120.06726 * 2 1 3 19 19 H 1.08994 * 109.45892 * 61.29609 * 18 2 1 20 20 C 1.52997 * 109.44905 * 301.32471 * 18 2 1 21 21 N 1.46494 * 109.47219 * 174.93762 * 20 18 2 22 22 C 1.36934 * 120.00358 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99664 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00582 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99350 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00130 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47302 * 59.99994 * 26 24 22 28 28 H 1.48507 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47458 * 300.00116 * 26 24 22 30 30 H 1.09000 * 109.47211 * 299.94005 * 1 2 3 31 31 H 1.09002 * 109.47144 * 59.93134 * 1 2 3 32 32 H 1.08997 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58145 * 305.20506 * 4 2 1 34 34 H 1.08997 * 109.58684 * 65.48028 * 4 2 1 35 35 H 1.08998 * 109.47452 * 300.00605 * 8 6 5 36 36 H 1.09005 * 109.46717 * 60.00766 * 8 6 5 37 37 H 1.08000 * 119.64984 * 0.02562 * 10 9 8 38 38 H 1.07996 * 120.02178 * 179.97438 * 11 10 9 39 39 H 1.07996 * 120.37082 * 179.97438 * 12 11 10 40 40 H 1.08005 * 120.34760 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.58861 * 186.78362 * 16 5 4 42 42 H 1.08996 * 109.58519 * 66.50253 * 16 5 4 43 43 H 1.09003 * 109.49294 * 174.51508 * 17 16 5 44 44 H 1.09001 * 109.49969 * 294.57596 * 17 16 5 45 45 H 1.09002 * 109.47309 * 294.94335 * 20 18 2 46 46 H 1.08999 * 109.46605 * 54.94148 * 20 18 2 47 47 H 0.96998 * 120.00334 * 0.02562 * 21 20 18 48 48 H 0.97000 * 119.99602 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5048 -0.8326 -1.1710 6 6 4.2816 -0.3922 -2.1806 7 8 3.7738 0.0964 -3.1676 8 6 5.7809 -0.5068 -2.0828 9 7 6.3925 0.0373 -3.2978 10 6 6.7215 1.3534 -3.3520 11 6 7.2880 1.8789 -4.4633 12 6 7.5399 1.0614 -5.5739 13 6 7.2087 -0.2606 -5.5176 14 6 6.6270 -0.7747 -4.3462 15 8 6.3306 -1.9569 -4.2803 16 6 4.1052 -1.4268 0.0311 17 6 3.5708 -0.6947 1.2661 18 6 2.0407 -0.7228 1.2485 19 1 1.6966 -1.7569 1.2357 20 6 1.5037 -0.0223 2.4982 21 7 1.8917 -0.7824 3.6889 22 6 1.5201 -0.3446 4.9320 23 1 0.9413 0.5615 5.0346 24 6 1.8881 -1.0646 6.0603 25 7 2.5947 -2.1679 5.9353 26 14 1.3817 -0.4667 7.7560 27 1 -0.0999 -0.4052 7.8372 28 1 1.8948 -1.4059 8.7856 29 1 1.9470 0.8857 7.9934 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7219 -1.2975 34 1 1.7615 -0.1599 -2.1390 35 1 6.1325 0.0534 -1.2164 36 1 6.0589 -1.5553 -1.9749 37 1 6.5299 1.9875 -2.4991 38 1 7.5449 2.9274 -4.4946 39 1 7.9913 1.4737 -6.4642 40 1 7.3947 -0.9063 -6.3632 41 1 5.1896 -1.3248 -0.0134 42 1 3.8397 -2.4823 0.0886 43 1 3.9334 -1.1892 2.1673 44 1 3.9164 0.3390 1.2543 45 1 1.9194 0.9836 2.5578 46 1 0.4167 0.0365 2.4429 47 1 2.4118 -1.5960 3.5968 48 1 2.8516 -2.6712 6.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185651036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:59 Heat of formation + Delta-G solvation = -46.118026 kcal Electronic energy + Delta-G solvation = -28879.060002 eV Core-core repulsion = 24933.751013 eV Total energy + Delta-G solvation = -3945.308989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.54978 -41.18066 -39.23978 -37.96239 -36.59341 -35.59109 -35.01247 -33.45618 -32.01797 -30.90173 -30.02036 -28.36589 -27.31147 -25.55015 -24.82035 -23.99950 -23.61878 -22.71752 -21.25167 -20.34341 -19.16561 -18.69853 -18.40810 -18.27006 -17.39381 -16.91714 -16.75551 -16.48573 -16.23782 -15.75332 -15.56332 -15.41929 -15.23651 -15.10124 -14.98331 -14.61745 -14.17582 -14.13132 -13.88448 -13.47013 -13.21900 -13.13669 -13.01502 -12.94890 -12.92971 -12.79211 -12.73004 -12.66096 -12.22394 -11.97615 -11.87942 -11.64626 -11.61537 -11.39911 -11.19611 -11.09445 -10.88611 -10.73281 -9.75788 -8.97708 -8.94230 -7.92947 -5.20124 -0.08885 0.93638 1.37134 1.41294 1.48744 1.50659 1.56835 1.96414 2.57718 2.70078 3.29086 3.40632 3.62478 3.67606 3.72212 3.76745 3.83324 3.98396 4.00681 4.11129 4.20086 4.22397 4.31064 4.36548 4.39159 4.51582 4.52417 4.62811 4.64529 4.74277 4.77460 4.83984 4.98642 5.03500 5.09127 5.13442 5.17538 5.20013 5.27031 5.35688 5.39457 5.47524 5.52777 5.58801 5.65156 6.05241 6.22164 6.30079 6.89712 6.97504 7.36945 8.14070 8.37537 9.30157 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002323 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.364062 B =12051.879105 C =12565.133997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.073 0.927 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.503 3.497 7 O -0.576 6.576 8 C 0.069 3.931 9 N -0.481 5.481 10 C 0.131 3.869 11 C -0.229 4.229 12 C 0.008 3.992 13 C -0.283 4.283 14 C 0.497 3.503 15 O -0.612 6.612 16 C 0.107 3.893 17 C -0.119 4.119 18 C -0.081 4.081 19 H 0.064 0.936 20 C 0.157 3.843 21 N -0.741 5.741 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.969 3.031 27 H -0.281 1.281 28 H -0.296 1.296 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.168 0.832 36 H 0.127 0.873 37 H 0.196 0.804 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 9.971 -20.758 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.290 3.710 7 O -0.456 6.456 8 C -0.056 4.056 9 N -0.190 5.190 10 C 0.006 3.994 11 C -0.251 4.251 12 C -0.014 4.014 13 C -0.305 4.305 14 C 0.303 3.697 15 O -0.500 6.500 16 C -0.015 4.015 17 C -0.157 4.157 18 C -0.100 4.100 19 H 0.082 0.918 20 C 0.031 3.969 21 N -0.385 5.385 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.207 1.207 28 H -0.222 1.222 29 H -0.204 1.204 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.186 0.814 36 H 0.145 0.855 37 H 0.213 0.787 38 H 0.200 0.800 39 H 0.187 0.813 40 H 0.163 0.837 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.033 0.967 46 H 0.041 0.959 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.608 9.585 -21.081 25.071 hybrid contribution -0.409 -0.527 1.175 1.351 sum 9.199 9.058 -19.905 23.725 Atomic orbital electron populations 1.21812 0.93723 1.02427 1.02376 1.21317 0.96636 0.99399 0.92890 0.90870 1.21664 0.78800 1.01134 0.98573 1.48164 1.07126 1.59853 1.18113 1.21088 0.90206 0.77298 0.82368 1.90702 1.75933 1.46783 1.32134 1.22064 0.89576 1.05410 0.88557 1.45122 1.48869 1.10098 1.14910 1.22704 0.92244 0.82755 1.01747 1.21189 1.08033 1.03100 0.92760 1.21891 0.88870 0.91663 0.98954 1.22115 1.10847 0.98984 0.98525 1.17660 0.80983 0.86149 0.84923 1.90906 1.58337 1.17734 1.83063 1.22000 0.99407 0.97657 0.82434 1.21827 0.95006 1.01459 0.97403 1.21233 0.95756 0.99469 0.93526 0.91770 1.20879 0.96683 0.93736 0.85611 1.42545 1.65267 1.29110 1.01530 1.19555 1.26789 1.05960 0.85234 0.91049 1.25484 1.01740 0.98036 1.01298 1.69783 1.44288 1.18519 1.29172 0.85283 0.77799 0.77190 0.79915 1.20724 1.22224 1.20422 0.92233 0.91366 0.92423 0.91009 0.89967 0.81434 0.85502 0.78733 0.79958 0.81308 0.83741 0.86927 0.90401 0.91185 0.91132 0.96668 0.95892 0.79185 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.82 71.98 0.63 -2.63 16 2 C -0.08 -1.95 2.42 -10.72 -0.03 -1.98 16 3 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.84 5.71 86.36 0.49 3.33 16 5 N -0.60 -13.48 2.98 -818.83 -2.44 -15.92 16 6 C 0.50 12.30 7.77 87.65 0.68 12.98 16 7 O -0.58 -18.66 15.85 -3.03 -0.05 -18.70 16 8 C 0.07 1.21 4.17 85.63 0.36 1.57 16 9 N -0.48 -9.61 2.07 -655.08 -1.36 -10.97 16 10 C 0.13 1.58 10.28 83.42 0.86 2.44 16 11 C -0.23 -2.12 10.01 22.08 0.22 -1.90 16 12 C 0.01 0.09 10.10 22.32 0.23 0.32 16 13 C -0.28 -5.82 9.99 22.40 0.22 -5.60 16 14 C 0.50 13.53 7.40 84.82 0.63 14.16 16 15 O -0.61 -22.17 16.63 -5.50 -0.09 -22.26 16 16 C 0.11 2.07 6.34 86.36 0.55 2.62 16 17 C -0.12 -2.97 5.25 30.67 0.16 -2.81 16 18 C -0.08 -2.30 1.73 -10.77 -0.02 -2.31 16 19 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.16 5.82 5.41 86.38 0.47 6.29 16 21 N -0.74 -35.66 5.32 -343.46 -1.83 -37.48 16 22 C -0.24 -13.19 9.99 84.04 0.84 -12.35 16 23 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.97 -57.35 13.06 21.65 0.28 -57.06 16 26 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H 0.06 1.45 6.29 -2.39 -0.02 1.44 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.11 7.02 -2.39 -0.02 2.09 16 35 H 0.17 1.34 7.56 -2.39 -0.02 1.32 16 36 H 0.13 2.40 7.18 -2.38 -0.02 2.38 16 37 H 0.20 0.86 8.04 -2.91 -0.02 0.84 16 38 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.11 1.47 5.93 -2.39 -0.01 1.46 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.11 7.15 -2.39 -0.02 2.09 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.02 0.87 6.14 -2.39 -0.01 0.86 16 47 H 0.38 19.00 6.85 -92.71 -0.63 18.36 16 48 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -81.55 385.27 3.63 -77.91 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.33 Total: 26.85 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.76 Total: 10.51 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -5.34 Total: -121.44 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.14 Total: -40.97 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -81.55 3.63 -77.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.796 kcal (2) G-P(sol) polarization free energy of solvation -81.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds