Wall clock time and date at job start Tue Mar 31 2020 17:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49908 * 2 1 4 4 C 1.53187 * 109.49816 * 120.09913 * 2 1 3 5 5 N 1.46924 * 108.77642 * 174.58630 * 4 2 1 6 6 C 1.34787 * 120.63033 * 126.66473 * 5 4 2 7 7 O 1.21282 * 119.99956 * 359.72115 * 6 5 4 8 8 C 1.50697 * 119.99793 * 179.72182 * 6 5 4 9 9 N 1.46497 * 109.46812 * 180.02562 * 8 6 5 10 10 C 1.35762 * 119.62207 * 269.72675 * 9 8 6 11 11 C 1.35351 * 120.70389 * 179.72168 * 10 9 8 12 12 C 1.40201 * 119.94805 * 0.52626 * 11 10 9 13 13 C 1.36400 * 119.26180 * 359.75088 * 12 11 10 14 14 C 1.34655 * 119.63157 * 90.00182 * 9 8 6 15 15 O 1.22064 * 119.98032 * 359.97438 * 14 9 8 16 16 C 1.46926 * 118.73991 * 306.38981 * 5 4 2 17 17 C 1.53187 * 108.77227 * 53.60881 * 16 5 4 18 18 C 1.53038 * 109.31606 * 305.36475 * 17 16 5 19 19 H 1.09007 * 109.46056 * 301.36333 * 18 17 16 20 20 C 1.52994 * 109.46484 * 181.38920 * 18 17 16 21 21 N 1.46500 * 109.47376 * 64.99866 * 20 18 17 22 22 C 1.36934 * 120.00512 * 180.02562 * 21 20 18 23 23 H 1.08009 * 119.99507 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00449 * 180.02562 * 22 21 20 25 25 N 1.31611 * 119.99713 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99923 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47186 * 90.00139 * 26 24 22 28 28 H 1.48505 * 109.46598 * 209.99581 * 26 24 22 29 29 H 1.48495 * 109.47510 * 329.99501 * 26 24 22 30 30 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46755 * 300.06418 * 1 2 3 32 32 H 1.08997 * 109.47172 * 60.06690 * 1 2 3 33 33 H 1.09003 * 109.59079 * 54.79779 * 4 2 1 34 34 H 1.09002 * 109.58636 * 294.37173 * 4 2 1 35 35 H 1.08997 * 109.47228 * 299.99525 * 8 6 5 36 36 H 1.08997 * 109.47248 * 60.00068 * 8 6 5 37 37 H 1.08000 * 119.64855 * 0.02562 * 10 9 8 38 38 H 1.08002 * 120.02744 * 180.27664 * 11 10 9 39 39 H 1.08000 * 120.37187 * 179.77177 * 12 11 10 40 40 H 1.08003 * 120.34811 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.58798 * 173.39259 * 16 5 4 42 42 H 1.08996 * 109.58371 * 293.82241 * 16 5 4 43 43 H 1.08999 * 109.50002 * 65.31872 * 17 16 5 44 44 H 1.09001 * 109.49774 * 185.38216 * 17 16 5 45 45 H 1.09000 * 109.47431 * 185.00169 * 20 18 17 46 46 H 1.09004 * 109.46773 * 304.99899 * 20 18 17 47 47 H 0.97003 * 120.00068 * 359.97438 * 21 20 18 48 48 H 0.96999 * 120.00236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2810 -0.3916 2.1804 7 8 3.7730 0.0995 3.1661 8 6 5.7801 -0.5123 2.0859 9 7 6.3912 0.0299 3.3020 10 6 6.7304 1.3435 3.3542 11 6 7.2910 1.8687 4.4685 12 6 7.5368 1.0508 5.5804 13 6 7.2004 -0.2698 5.5241 14 6 6.6152 -0.7812 4.3532 15 8 6.3089 -1.9611 4.2894 16 6 4.1053 -1.4267 -0.0312 17 6 3.5709 -0.6946 -1.2662 18 6 2.0409 -0.7227 -1.2486 19 1 1.6967 -1.7569 -1.2355 20 6 1.5037 -0.0225 -2.4984 21 7 1.8917 -0.7829 -3.6890 22 6 1.5209 -0.3448 -4.9322 23 1 0.9419 0.5612 -5.0350 24 6 1.8880 -1.0656 -6.0603 25 7 2.5931 -2.1698 -5.9349 26 14 1.3815 -0.4682 -7.7561 27 1 2.4295 0.4346 -8.2964 28 1 1.2164 -1.6331 -8.6623 29 1 0.0960 0.2686 -7.6579 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6053 -1.7220 1.2975 34 1 1.7638 -0.1585 2.1388 35 1 6.0541 -1.5619 1.9791 36 1 6.1358 0.0460 1.2201 37 1 6.5465 1.9771 2.4992 38 1 7.5525 2.9161 4.4998 39 1 7.9872 1.4620 6.4718 40 1 7.3816 -0.9157 6.3706 41 1 5.1896 -1.3246 0.0133 42 1 3.8375 -2.4818 -0.0875 43 1 3.9160 0.3392 -1.2540 44 1 3.9339 -1.1887 -2.1674 45 1 0.4167 0.0363 -2.4431 46 1 1.9194 0.9834 -2.5582 47 1 2.4120 -1.5964 -3.5967 48 1 2.8500 -2.6733 -6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185651037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:03 Heat of formation + Delta-G solvation = -22.877132 kcal Electronic energy + Delta-G solvation = -28878.971949 eV Core-core repulsion = 24934.670761 eV Total energy + Delta-G solvation = -3944.301188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75315 -40.19238 -38.10358 -37.09413 -35.10045 -34.83896 -33.65420 -32.05283 -30.40943 -30.20572 -29.16276 -26.97277 -26.30608 -24.22666 -23.79904 -23.01657 -22.58103 -21.40433 -20.15315 -19.32012 -17.95098 -17.64690 -17.47807 -17.07231 -16.63612 -15.99872 -15.57099 -15.36102 -14.92875 -14.74257 -14.50572 -14.38525 -14.01851 -13.92027 -13.61084 -13.55257 -13.02085 -12.81548 -12.63480 -12.54831 -12.45199 -12.19427 -12.11350 -11.97499 -11.87821 -11.67869 -11.04251 -10.95781 -10.85755 -10.76804 -10.44752 -10.36326 -10.24765 -10.18575 -10.02241 -9.82218 -9.67628 -8.90425 -8.72310 -8.23888 -6.94786 -5.80821 -3.08841 0.55612 1.64335 2.16146 2.33682 2.84829 3.40276 3.44808 3.45954 3.47358 4.15630 4.23534 4.29565 4.54783 4.56596 4.67184 4.77505 4.86563 4.89119 4.91059 4.97874 5.02515 5.06097 5.21861 5.36341 5.45417 5.53437 5.63753 5.64526 5.73256 5.76424 5.79782 5.85126 5.91704 5.99117 6.01300 6.16055 6.20853 6.21594 6.26561 6.36308 6.43793 6.55748 6.78275 6.78526 6.87457 7.18145 7.66489 7.78875 7.90307 8.38621 9.49827 10.07776 10.42226 11.42142 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002322 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.866905 B =12055.237941 C =12568.297822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.505 3.495 7 O -0.535 6.535 8 C 0.069 3.931 9 N -0.479 5.479 10 C 0.144 3.856 11 C -0.234 4.234 12 C -0.015 4.015 13 C -0.243 4.243 14 C 0.519 3.481 15 O -0.551 6.551 16 C 0.102 3.898 17 C -0.126 4.126 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 7.397 20.464 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.291 3.709 7 O -0.412 6.412 8 C -0.056 4.056 9 N -0.190 5.190 10 C 0.017 3.983 11 C -0.257 4.257 12 C -0.037 4.037 13 C -0.265 4.265 14 C 0.321 3.679 15 O -0.434 6.434 16 C -0.021 4.021 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.716 6.955 20.786 23.588 hybrid contribution -0.091 0.112 -1.127 1.137 sum 8.624 7.067 19.658 22.600 Atomic orbital electron populations 1.21834 0.94288 1.02287 1.02093 1.21453 0.96224 0.99816 0.94062 0.90926 1.21740 0.78240 1.01134 0.99256 1.48108 1.07282 1.60296 1.17875 1.20569 0.88946 0.78360 0.83051 1.90726 1.74927 1.44754 1.30791 1.21892 0.91862 1.04594 0.87240 1.45081 1.49425 1.09281 1.15181 1.21951 0.92654 0.83827 0.99899 1.20630 1.09932 1.01519 0.93651 1.21439 0.91560 0.93079 0.97603 1.22084 1.08081 0.97275 0.99030 1.17160 0.80759 0.86378 0.83602 1.90964 1.54883 1.15610 1.81909 1.21971 0.97648 0.98143 0.84295 1.21942 0.96261 1.01035 0.97126 1.21346 0.94601 1.00335 0.94567 0.90849 1.20749 0.96733 0.94001 0.85591 1.42376 1.65467 1.28938 1.00843 1.19219 1.27727 1.06156 0.83828 0.91299 1.24721 1.00969 0.97495 0.97819 1.69642 1.42859 1.17211 1.28583 0.86204 0.78067 0.77471 0.84540 1.21759 1.21778 1.20805 0.92440 0.92990 0.91233 0.91284 0.89240 0.85138 0.85859 0.82201 0.83678 0.84805 0.83481 0.90162 0.90511 0.91713 0.89007 0.95769 0.96604 0.78320 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.19 2.41 -90.50 -0.22 -1.41 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.45 5.72 -3.71 -0.02 1.42 16 5 N -0.60 -7.16 2.97 -172.77 -0.51 -7.67 16 6 C 0.50 6.46 7.76 -10.98 -0.09 6.38 16 7 O -0.54 -8.78 15.84 5.56 0.09 -8.69 16 8 C 0.07 0.67 4.16 -5.20 -0.02 0.65 16 9 N -0.48 -5.10 2.07 -121.07 -0.25 -5.35 16 10 C 0.14 1.09 10.28 -16.84 -0.17 0.92 16 11 C -0.23 -1.54 10.01 -39.87 -0.40 -1.94 16 12 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 13 C -0.24 -2.50 9.99 -39.38 -0.39 -2.89 16 14 C 0.52 6.90 7.40 -15.45 -0.11 6.78 16 15 O -0.55 -9.39 16.64 4.86 0.08 -9.31 16 16 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 17 C -0.13 -1.64 5.25 -26.62 -0.14 -1.78 16 18 C -0.09 -1.30 1.73 -90.58 -0.16 -1.46 16 19 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 20 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 21 N -0.73 -17.52 5.32 -59.91 -0.32 -17.84 16 22 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 26 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 35 H 0.13 1.28 7.19 -51.93 -0.37 0.91 16 36 H 0.12 0.72 7.55 -51.93 -0.39 0.33 16 37 H 0.16 0.72 8.03 -52.49 -0.42 0.30 16 38 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 41 H 0.08 0.63 5.94 -51.93 -0.31 0.33 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.40 7.15 -51.93 -0.37 1.02 16 45 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 9.53 6.85 -40.82 -0.28 9.26 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -36.10 385.26 -8.85 -44.95 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.35 Total: 6.22 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.09 Total: 1.63 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.36 Total: -57.55 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.10 -8.85 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.070 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds