Wall clock time and date at job start Tue Mar 31 2020 17:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49908 * 2 1 4 4 C 1.53187 * 109.49816 * 120.09913 * 2 1 3 5 5 N 1.46924 * 108.77642 * 174.58630 * 4 2 1 6 6 C 1.34787 * 120.63033 * 126.66473 * 5 4 2 7 7 O 1.21282 * 119.99956 * 359.72115 * 6 5 4 8 8 C 1.50697 * 119.99793 * 179.72182 * 6 5 4 9 9 N 1.46497 * 109.46812 * 180.02562 * 8 6 5 10 10 C 1.35762 * 119.62207 * 269.72675 * 9 8 6 11 11 C 1.35351 * 120.70389 * 179.72168 * 10 9 8 12 12 C 1.40201 * 119.94805 * 0.52626 * 11 10 9 13 13 C 1.36400 * 119.26180 * 359.75088 * 12 11 10 14 14 C 1.34655 * 119.63157 * 90.00182 * 9 8 6 15 15 O 1.22064 * 119.98032 * 359.97438 * 14 9 8 16 16 C 1.46926 * 118.73991 * 306.38981 * 5 4 2 17 17 C 1.53187 * 108.77227 * 53.60881 * 16 5 4 18 18 C 1.53038 * 109.31606 * 305.36475 * 17 16 5 19 19 H 1.09007 * 109.46056 * 301.36333 * 18 17 16 20 20 C 1.52994 * 109.46484 * 181.38920 * 18 17 16 21 21 N 1.46500 * 109.47376 * 64.99866 * 20 18 17 22 22 C 1.36934 * 120.00512 * 180.02562 * 21 20 18 23 23 H 1.08009 * 119.99507 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00449 * 180.02562 * 22 21 20 25 25 N 1.31611 * 119.99713 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99923 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47186 * 90.00139 * 26 24 22 28 28 H 1.48505 * 109.46598 * 209.99581 * 26 24 22 29 29 H 1.48495 * 109.47510 * 329.99501 * 26 24 22 30 30 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46755 * 300.06418 * 1 2 3 32 32 H 1.08997 * 109.47172 * 60.06690 * 1 2 3 33 33 H 1.09003 * 109.59079 * 54.79779 * 4 2 1 34 34 H 1.09002 * 109.58636 * 294.37173 * 4 2 1 35 35 H 1.08997 * 109.47228 * 299.99525 * 8 6 5 36 36 H 1.08997 * 109.47248 * 60.00068 * 8 6 5 37 37 H 1.08000 * 119.64855 * 0.02562 * 10 9 8 38 38 H 1.08002 * 120.02744 * 180.27664 * 11 10 9 39 39 H 1.08000 * 120.37187 * 179.77177 * 12 11 10 40 40 H 1.08003 * 120.34811 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.58798 * 173.39259 * 16 5 4 42 42 H 1.08996 * 109.58371 * 293.82241 * 16 5 4 43 43 H 1.08999 * 109.50002 * 65.31872 * 17 16 5 44 44 H 1.09001 * 109.49774 * 185.38216 * 17 16 5 45 45 H 1.09000 * 109.47431 * 185.00169 * 20 18 17 46 46 H 1.09004 * 109.46773 * 304.99899 * 20 18 17 47 47 H 0.97003 * 120.00068 * 359.97438 * 21 20 18 48 48 H 0.96999 * 120.00236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2810 -0.3916 2.1804 7 8 3.7730 0.0995 3.1661 8 6 5.7801 -0.5123 2.0859 9 7 6.3912 0.0299 3.3020 10 6 6.7304 1.3435 3.3542 11 6 7.2910 1.8687 4.4685 12 6 7.5368 1.0508 5.5804 13 6 7.2004 -0.2698 5.5241 14 6 6.6152 -0.7812 4.3532 15 8 6.3089 -1.9611 4.2894 16 6 4.1053 -1.4267 -0.0312 17 6 3.5709 -0.6946 -1.2662 18 6 2.0409 -0.7227 -1.2486 19 1 1.6967 -1.7569 -1.2355 20 6 1.5037 -0.0225 -2.4984 21 7 1.8917 -0.7829 -3.6890 22 6 1.5209 -0.3448 -4.9322 23 1 0.9419 0.5612 -5.0350 24 6 1.8880 -1.0656 -6.0603 25 7 2.5931 -2.1698 -5.9349 26 14 1.3815 -0.4682 -7.7561 27 1 2.4295 0.4346 -8.2964 28 1 1.2164 -1.6331 -8.6623 29 1 0.0960 0.2686 -7.6579 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6053 -1.7220 1.2975 34 1 1.7638 -0.1585 2.1388 35 1 6.0541 -1.5619 1.9791 36 1 6.1358 0.0460 1.2201 37 1 6.5465 1.9771 2.4992 38 1 7.5525 2.9161 4.4998 39 1 7.9872 1.4620 6.4718 40 1 7.3816 -0.9157 6.3706 41 1 5.1896 -1.3246 0.0133 42 1 3.8375 -2.4818 -0.0875 43 1 3.9160 0.3392 -1.2540 44 1 3.9339 -1.1887 -2.1674 45 1 0.4167 0.0363 -2.4431 46 1 1.9194 0.9834 -2.5582 47 1 2.4120 -1.5964 -3.5967 48 1 2.8500 -2.6733 -6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185651037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:02 Heat of formation + Delta-G solvation = -46.179836 kcal Electronic energy + Delta-G solvation = -28879.982430 eV Core-core repulsion = 24934.670761 eV Total energy + Delta-G solvation = -3945.311669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54965 -41.18301 -39.23909 -37.96091 -36.59517 -35.59121 -35.01219 -33.45719 -32.01870 -30.90151 -30.02014 -28.36671 -27.31057 -25.55175 -24.81924 -23.99974 -23.61803 -22.71686 -21.24925 -20.34563 -19.16741 -18.69843 -18.40658 -18.27119 -17.39389 -16.91626 -16.75598 -16.48515 -16.23995 -15.75399 -15.56041 -15.42051 -15.23890 -15.10074 -14.98347 -14.61769 -14.17485 -14.13061 -13.88792 -13.47020 -13.21751 -13.13917 -13.01468 -12.94809 -12.93562 -12.80019 -12.73350 -12.67726 -12.17953 -11.97668 -11.88405 -11.64711 -11.61243 -11.39839 -11.19589 -11.09398 -10.89504 -10.73372 -9.75728 -8.97692 -8.94319 -7.93243 -5.20364 -0.08879 0.93738 1.37100 1.41451 1.48752 1.49366 1.57776 1.96549 2.57442 2.70105 3.29160 3.40554 3.62483 3.67637 3.72247 3.76811 3.83402 3.98634 4.00691 4.11136 4.20099 4.22372 4.31143 4.36568 4.39199 4.51562 4.52438 4.62816 4.64529 4.74234 4.77251 4.83979 4.98666 5.03525 5.09151 5.13454 5.17541 5.19998 5.27163 5.35694 5.39454 5.47586 5.52901 5.58832 5.65181 6.05292 6.22176 6.29939 6.89799 6.97588 7.36806 8.13845 8.37311 9.30080 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002322 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.866905 B =12055.237941 C =12568.297822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.073 0.927 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.502 3.498 7 O -0.576 6.576 8 C 0.069 3.931 9 N -0.481 5.481 10 C 0.131 3.869 11 C -0.229 4.229 12 C 0.008 3.992 13 C -0.283 4.283 14 C 0.497 3.503 15 O -0.612 6.612 16 C 0.107 3.893 17 C -0.119 4.119 18 C -0.081 4.081 19 H 0.064 0.936 20 C 0.157 3.843 21 N -0.741 5.741 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.968 3.032 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.168 0.832 37 H 0.196 0.804 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.015 0.985 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 9.942 20.801 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.290 3.710 7 O -0.456 6.456 8 C -0.056 4.056 9 N -0.190 5.190 10 C 0.005 3.995 11 C -0.251 4.251 12 C -0.014 4.014 13 C -0.305 4.305 14 C 0.303 3.697 15 O -0.500 6.500 16 C -0.015 4.015 17 C -0.157 4.157 18 C -0.100 4.100 19 H 0.082 0.918 20 C 0.031 3.969 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.186 0.814 37 H 0.213 0.787 38 H 0.200 0.800 39 H 0.187 0.813 40 H 0.163 0.837 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.033 0.967 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.611 9.564 21.126 25.103 hybrid contribution -0.389 -0.532 -1.181 1.352 sum 9.222 9.032 19.945 23.758 Atomic orbital electron populations 1.21814 0.93733 1.02426 1.02367 1.21319 0.96629 0.99397 0.92897 0.90882 1.21666 0.78808 1.01126 0.98575 1.48163 1.07128 1.59874 1.18108 1.21094 0.90213 0.77338 0.82321 1.90702 1.75913 1.46692 1.32246 1.22063 0.89592 1.05408 0.88531 1.45118 1.48835 1.10297 1.14749 1.22705 0.92205 0.82774 1.01777 1.21194 1.08145 1.03086 0.92657 1.21894 0.88870 0.91644 0.98979 1.22115 1.10774 0.99039 0.98533 1.17663 0.81017 0.86111 0.84926 1.90907 1.58100 1.17899 1.83138 1.22008 0.99412 0.97611 0.82454 1.21825 0.95003 1.01456 0.97412 1.21233 0.95758 0.99470 0.93521 0.91771 1.20880 0.96686 0.93736 0.85611 1.42555 1.65274 1.29092 1.01534 1.19588 1.26718 1.05867 0.85218 0.91037 1.25479 1.01809 0.98006 1.01289 1.69785 1.44451 1.18459 1.29084 0.85213 0.78035 0.76732 0.80228 1.21368 1.22352 1.19747 0.92419 0.91373 0.92238 0.90980 0.89979 0.85507 0.81425 0.78718 0.79957 0.81309 0.83744 0.86901 0.90394 0.91141 0.91193 0.95886 0.96661 0.79183 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.82 71.98 0.63 -2.63 16 2 C -0.08 -1.96 2.41 -10.72 -0.03 -1.98 16 3 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.84 5.72 86.36 0.49 3.33 16 5 N -0.60 -13.48 2.97 -818.91 -2.43 -15.92 16 6 C 0.50 12.30 7.76 87.65 0.68 12.98 16 7 O -0.58 -18.67 15.84 -3.04 -0.05 -18.72 16 8 C 0.07 1.21 4.16 85.63 0.36 1.57 16 9 N -0.48 -9.60 2.07 -655.09 -1.36 -10.96 16 10 C 0.13 1.58 10.28 83.42 0.86 2.43 16 11 C -0.23 -2.12 10.01 22.08 0.22 -1.90 16 12 C 0.01 0.09 10.10 22.32 0.23 0.32 16 13 C -0.28 -5.82 9.99 22.40 0.22 -5.60 16 14 C 0.50 13.53 7.40 84.82 0.63 14.16 16 15 O -0.61 -22.18 16.64 -5.52 -0.09 -22.27 16 16 C 0.11 2.07 6.34 86.36 0.55 2.62 16 17 C -0.12 -2.97 5.25 30.67 0.16 -2.81 16 18 C -0.08 -2.29 1.73 -10.77 -0.02 -2.31 16 19 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 20 C 0.16 5.82 5.41 86.38 0.47 6.29 16 21 N -0.74 -35.64 5.32 -343.45 -1.83 -37.46 16 22 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 23 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 26 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.45 6.29 -2.39 -0.02 1.44 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 35 H 0.13 2.39 7.19 -2.39 -0.02 2.37 16 36 H 0.17 1.33 7.55 -2.39 -0.02 1.32 16 37 H 0.20 0.85 8.03 -2.91 -0.02 0.83 16 38 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.11 1.47 5.94 -2.39 -0.01 1.46 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 2.10 7.15 -2.39 -0.02 2.09 16 45 H 0.02 0.88 6.14 -2.39 -0.01 0.86 16 46 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.38 18.99 6.85 -92.71 -0.63 18.35 16 48 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -81.63 385.26 3.64 -77.99 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.33 Total: 26.68 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.76 Total: 10.57 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -5.34 Total: -121.42 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.14 Total: -40.99 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -81.63 3.64 -77.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.812 kcal (2) G-P(sol) polarization free energy of solvation -81.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds