Wall clock time and date at job start Tue Mar 31 2020 17:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49488 * 2 1 4 4 C 1.53194 * 109.49642 * 239.94067 * 2 1 3 5 5 N 1.46926 * 108.77448 * 294.65219 * 4 2 1 6 6 C 1.34773 * 120.63281 * 126.37274 * 5 4 2 7 7 O 1.21274 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99897 * 179.97438 * 6 5 4 9 9 N 1.46501 * 109.47180 * 179.97438 * 8 6 5 10 10 C 1.35760 * 119.62629 * 270.29693 * 9 8 6 11 11 C 1.35349 * 120.70265 * 180.26293 * 10 9 8 12 12 C 1.40203 * 119.94716 * 359.45924 * 11 10 9 13 13 C 1.36401 * 119.26492 * 0.25974 * 12 11 10 14 14 C 1.34662 * 119.62406 * 89.99781 * 9 8 6 15 15 O 1.22063 * 119.98273 * 0.02588 * 14 9 8 16 16 C 1.46931 * 118.73615 * 306.64107 * 5 4 2 17 17 C 1.52760 * 109.00572 * 53.31026 * 16 5 4 18 18 C 1.53033 * 109.52396 * 120.08245 * 2 1 3 19 19 H 1.09007 * 109.45725 * 178.62276 * 18 2 1 20 20 C 1.52993 * 109.46124 * 298.58185 * 18 2 1 21 21 N 1.46504 * 109.47248 * 184.99847 * 20 18 2 22 22 C 1.36930 * 120.00244 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00304 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00330 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99323 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46838 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46852 * 119.99809 * 26 24 22 29 29 H 1.48502 * 109.47233 * 239.99741 * 26 24 22 30 30 H 1.09000 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46963 * 300.06570 * 1 2 3 32 32 H 1.09003 * 109.47153 * 60.06194 * 1 2 3 33 33 H 1.09001 * 109.58890 * 174.86438 * 4 2 1 34 34 H 1.09004 * 109.70598 * 54.50393 * 4 2 1 35 35 H 1.09001 * 109.47432 * 59.99897 * 8 6 5 36 36 H 1.09006 * 109.47374 * 299.99486 * 8 6 5 37 37 H 1.07997 * 119.64937 * 359.97438 * 10 9 8 38 38 H 1.08002 * 120.02977 * 179.74545 * 11 10 9 39 39 H 1.07998 * 120.36928 * 180.23487 * 12 11 10 40 40 H 1.07999 * 120.34709 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.58358 * 173.14566 * 16 5 4 42 42 H 1.08999 * 109.58665 * 293.57262 * 16 5 4 43 43 H 1.09005 * 109.56314 * 185.54872 * 17 16 5 44 44 H 1.09006 * 109.38821 * 65.51706 * 17 16 5 45 45 H 1.09003 * 109.47425 * 304.99842 * 20 18 2 46 46 H 1.09001 * 109.47026 * 65.00414 * 20 18 2 47 47 H 0.97002 * 119.99630 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99658 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 1.6522 -2.1379 -1.1700 6 6 0.9747 -2.7217 -2.1782 7 8 0.6801 -2.0785 -3.1633 8 6 0.5832 -4.1737 -2.0815 9 7 -0.1388 -4.5667 -3.2942 10 6 -1.4888 -4.4323 -3.3448 11 6 -2.1782 -4.7934 -4.4521 12 6 -1.4961 -5.3019 -5.5665 13 6 -0.1391 -5.4309 -5.5159 14 6 0.5448 -5.0514 -4.3483 15 8 1.7590 -5.1616 -4.2894 16 6 2.0105 -2.9023 0.0326 17 6 1.5044 -2.1559 1.2656 18 6 2.0415 -0.7230 1.2481 19 1 3.1313 -0.7438 1.2347 20 6 1.5614 0.0167 2.4983 21 7 2.1480 -0.6041 3.6885 22 6 1.8592 -0.1089 4.9320 23 1 1.1993 0.7398 5.0354 24 6 2.4155 -0.6968 6.0598 25 7 3.2202 -1.7307 5.9338 26 14 2.0221 -0.0207 7.7561 27 1 1.1002 1.1362 7.6262 28 1 1.3766 -1.0793 8.5734 29 1 3.2771 0.4189 8.4171 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8893 32 1 -0.3634 0.5129 -0.8906 33 1 3.1275 -0.6454 -1.2986 34 1 1.6023 -0.2734 -2.1404 35 1 -0.0593 -4.3198 -1.2132 36 1 1.4793 -4.7856 -1.9775 37 1 -2.0187 -4.0373 -2.4907 38 1 -3.2525 -4.6856 -4.4790 39 1 -2.0390 -5.5886 -6.4550 40 1 0.4039 -5.8210 -6.3640 41 1 1.5491 -3.8888 -0.0107 42 1 3.0940 -3.0055 0.0905 43 1 1.8500 -2.6630 2.1665 44 1 0.4146 -2.1361 1.2546 45 1 1.8698 1.0608 2.4437 46 1 0.4744 -0.0384 2.5581 47 1 2.7411 -1.3661 3.5957 48 1 3.6086 -2.1418 6.7218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185651038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:05 Heat of formation + Delta-G solvation = -42.952103 kcal Electronic energy + Delta-G solvation = -29128.479676 eV Core-core repulsion = 25183.307972 eV Total energy + Delta-G solvation = -3945.171704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55348 -41.29177 -39.27208 -37.95559 -36.58646 -35.56905 -34.86377 -33.26029 -31.98478 -30.88483 -29.92389 -28.49628 -27.42511 -25.51207 -24.81922 -24.17873 -23.89879 -22.84516 -21.20622 -19.68147 -19.06871 -18.62847 -18.46229 -18.26602 -17.36164 -16.90446 -16.81671 -16.51561 -16.14097 -15.83020 -15.53530 -15.39946 -15.35213 -15.10639 -14.98310 -14.71785 -14.38125 -13.96094 -13.74885 -13.61187 -13.41508 -13.20393 -12.99674 -12.96909 -12.84099 -12.73344 -12.67454 -12.45787 -12.14596 -12.02852 -11.90060 -11.59746 -11.55561 -11.30889 -11.23468 -11.08904 -10.89768 -10.71211 -9.71854 -8.97197 -8.94780 -7.93550 -5.20612 -0.08368 0.94191 1.40302 1.42941 1.48189 1.49026 1.58465 1.98607 2.57264 2.70801 3.30572 3.40472 3.63242 3.70728 3.73031 3.77562 3.82957 4.00829 4.05064 4.12029 4.20628 4.20968 4.32871 4.36941 4.39955 4.48262 4.52757 4.65117 4.71351 4.74404 4.80122 4.85888 4.97951 5.03534 5.08247 5.18584 5.19517 5.19606 5.24957 5.31664 5.39887 5.49199 5.54206 5.61979 5.65663 6.05821 6.25190 6.29897 6.92127 6.99116 7.36698 8.13793 8.37150 9.29963 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.002321 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.874242 B =12062.714212 C =12285.589548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.087 0.913 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.504 3.496 7 O -0.574 6.574 8 C 0.068 3.932 9 N -0.481 5.481 10 C 0.132 3.868 11 C -0.229 4.229 12 C 0.008 3.992 13 C -0.283 4.283 14 C 0.498 3.502 15 O -0.613 6.613 16 C 0.107 3.893 17 C -0.120 4.120 18 C -0.080 4.080 19 H 0.063 0.937 20 C 0.159 3.841 21 N -0.742 5.742 22 C -0.241 4.241 23 H 0.072 0.928 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.968 3.032 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.126 0.874 37 H 0.195 0.805 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.011 0.989 46 H 0.025 0.975 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.502 -6.685 -20.775 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.291 3.709 7 O -0.454 6.454 8 C -0.057 4.057 9 N -0.189 5.189 10 C 0.006 3.994 11 C -0.251 4.251 12 C -0.014 4.014 13 C -0.305 4.305 14 C 0.303 3.697 15 O -0.500 6.500 16 C -0.015 4.015 17 C -0.158 4.158 18 C -0.099 4.099 19 H 0.081 0.919 20 C 0.033 3.967 21 N -0.385 5.385 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.223 1.223 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.185 0.815 36 H 0.144 0.856 37 H 0.212 0.788 38 H 0.200 0.800 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.029 0.971 46 H 0.043 0.957 47 H 0.208 0.792 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.969 -6.277 -21.104 25.553 hybrid contribution 0.729 0.247 1.172 1.402 sum -12.240 -6.030 -19.932 24.155 Atomic orbital electron populations 1.21792 0.94350 1.01923 1.01452 1.21381 0.96966 0.99547 0.92917 0.89480 1.21642 0.99838 0.80203 0.98567 1.48092 1.54892 1.11845 1.18027 1.21027 0.77577 0.89883 0.82386 1.90701 1.56510 1.65994 1.32216 1.22070 1.02175 0.92861 0.88581 1.45122 1.08186 1.50891 1.14736 1.22691 0.81309 0.93639 1.01756 1.21188 1.02811 1.08296 0.92813 1.21890 0.92872 0.87709 0.98913 1.22111 0.96805 1.12939 0.98631 1.17658 0.87677 0.79519 0.84847 1.90907 1.15331 1.60711 1.83098 1.21904 1.01615 0.95414 0.82558 1.21784 1.01609 0.95104 0.97323 1.21183 0.99827 0.95426 0.93453 0.91876 1.20838 0.95699 0.94498 0.85661 1.42571 1.56846 1.37522 1.01548 1.19625 1.22054 1.10379 0.85211 0.91018 1.25483 1.00702 0.99154 1.01289 1.69798 1.37137 1.25843 1.29014 0.85147 0.77033 0.77590 0.80446 1.19284 1.21961 1.22325 0.92490 0.92585 0.92710 0.90978 0.89940 0.81546 0.85580 0.78760 0.79979 0.81341 0.83779 0.87031 0.90477 0.91372 0.90700 0.97076 0.95725 0.79168 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.38 71.98 0.60 -2.44 16 2 C -0.09 -2.05 2.72 -10.72 -0.03 -2.08 16 3 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.12 2.76 5.83 86.36 0.50 3.26 16 5 N -0.60 -12.99 2.42 -819.73 -1.98 -14.97 16 6 C 0.50 12.03 7.76 87.66 0.68 12.71 16 7 O -0.57 -18.25 15.84 -3.01 -0.05 -18.29 16 8 C 0.07 1.18 4.16 85.63 0.36 1.54 16 9 N -0.48 -9.50 2.07 -655.06 -1.36 -10.86 16 10 C 0.13 1.57 10.28 83.42 0.86 2.43 16 11 C -0.23 -2.10 10.01 22.08 0.22 -1.88 16 12 C 0.01 0.09 10.10 22.32 0.23 0.32 16 13 C -0.28 -5.81 9.99 22.40 0.22 -5.58 16 14 C 0.50 13.48 7.40 84.82 0.63 14.11 16 15 O -0.61 -22.12 16.64 -5.52 -0.09 -22.22 16 16 C 0.11 2.04 6.31 86.22 0.54 2.58 16 17 C -0.12 -2.95 4.89 30.53 0.15 -2.80 16 18 C -0.08 -2.24 1.96 -10.77 -0.02 -2.26 16 19 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 20 C 0.16 5.87 5.19 86.38 0.45 6.32 16 21 N -0.74 -35.57 5.32 -343.45 -1.83 -37.40 16 22 C -0.24 -13.02 9.99 84.04 0.84 -12.18 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 25 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 26 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 30 H 0.06 1.22 5.97 -2.39 -0.01 1.20 16 31 H 0.06 1.32 6.59 -2.39 -0.02 1.30 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.08 7.00 -2.38 -0.02 2.06 16 35 H 0.17 1.31 7.55 -2.39 -0.02 1.29 16 36 H 0.13 2.37 7.20 -2.38 -0.02 2.35 16 37 H 0.20 0.83 8.04 -2.91 -0.02 0.81 16 38 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.11 1.44 5.93 -2.39 -0.01 1.42 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 2.04 7.15 -2.38 -0.02 2.02 16 44 H 0.07 1.75 6.34 -2.38 -0.02 1.73 16 45 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.02 0.91 6.74 -2.39 -0.02 0.89 16 47 H 0.38 18.95 6.84 -92.71 -0.63 18.32 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -81.34 381.23 4.04 -77.30 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.34 Total: 25.96 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.70 Total: 10.37 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.88 Total: -120.29 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.14 Total: -40.51 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -81.34 4.04 -77.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.350 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds