Wall clock time and date at job start Tue Mar 31 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47033 * 119.99472 * 2 1 3 5 5 O 1.21284 * 119.99753 * 120.00056 * 4 2 1 6 6 N 1.34772 * 120.00669 * 300.00281 * 4 2 1 7 7 C 1.47517 * 118.75269 * 359.97438 * 6 4 2 8 8 C 1.53573 * 111.02675 * 221.60861 * 7 6 4 9 9 C 1.51536 * 109.58552 * 39.97506 * 8 7 6 10 10 O 1.42157 * 108.75418 * 268.60159 * 9 8 7 11 11 C 1.38016 * 119.43811 * 87.23152 * 10 9 8 12 12 H 1.09000 * 109.47111 * 56.56705 * 11 10 9 13 13 C 1.52997 * 109.47157 * 176.56048 * 11 10 9 14 14 N 1.46500 * 109.46985 * 300.00398 * 13 11 10 15 15 C 1.36942 * 119.99475 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00189 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99697 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00183 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00310 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46581 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47465 * 119.99655 * 19 17 15 22 22 H 1.48496 * 109.47318 * 240.00268 * 19 17 15 23 23 C 1.45117 * 118.76389 * 179.73105 * 6 4 2 24 24 C 1.50699 * 109.47305 * 239.99977 * 2 1 3 25 25 C 1.38664 * 120.42392 * 120.02262 * 24 2 1 26 26 C 1.38633 * 118.42441 * 179.97438 * 25 24 2 27 27 C 1.38225 * 119.15790 * 359.97438 * 26 25 24 28 28 N 1.31852 * 120.76444 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72922 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46801 * 300.00242 * 1 2 3 32 32 H 1.09004 * 109.46658 * 60.00310 * 1 2 3 33 33 H 1.09005 * 109.16728 * 342.00480 * 7 6 4 34 34 H 1.09000 * 109.16821 * 101.25783 * 7 6 4 35 35 H 1.08999 * 109.45099 * 160.01600 * 8 7 6 36 36 H 1.09008 * 109.44590 * 279.96227 * 8 7 6 37 37 H 1.08998 * 109.58533 * 28.38193 * 9 8 7 38 38 H 1.08994 * 109.58726 * 148.67333 * 9 8 7 39 39 H 1.09009 * 109.46431 * 59.99743 * 13 11 10 40 40 H 1.08997 * 109.47227 * 179.97438 * 13 11 10 41 41 H 0.96990 * 120.00650 * 359.97438 * 14 13 11 42 42 H 0.96995 * 119.99964 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.45961 * 210.76006 * 23 6 4 44 44 H 1.09004 * 109.45485 * 330.71174 * 23 6 4 45 45 H 1.08004 * 120.78415 * 359.97438 * 25 24 2 46 46 H 1.07995 * 120.41946 * 180.25001 * 26 25 24 47 47 H 1.07994 * 119.61274 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.61820 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 0.8576 0.9519 2.5580 8 6 1.3610 1.8887 3.6660 9 6 2.8757 1.9308 3.6462 10 8 3.3722 0.9284 4.5234 11 6 3.5649 -0.3533 4.0490 12 1 4.2361 -0.3259 3.1906 13 6 4.1812 -1.2177 5.1507 14 7 5.4687 -0.6480 5.5555 15 6 6.2084 -1.2553 6.5350 16 1 5.8424 -2.1538 7.0094 17 6 7.4286 -0.7158 6.9182 18 7 7.8750 0.3790 6.3398 19 14 8.4381 -1.5444 8.2539 20 1 7.7214 -2.7512 8.7390 21 1 9.7582 -1.9418 7.7020 22 1 8.6372 -0.5994 9.3819 23 6 2.2003 -0.9581 3.6211 24 6 2.0324 -0.7104 -1.2304 25 6 2.8305 -0.0451 -2.1487 26 6 3.2700 -0.7387 -3.2657 27 6 2.9011 -2.0612 -3.4255 28 7 2.1406 -2.6620 -2.5315 29 6 1.7043 -2.0335 -1.4573 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 0.8719 1.4832 1.6063 34 1 -0.1650 0.6493 2.7834 35 1 0.9677 2.8916 3.4999 36 1 1.0209 1.5212 4.6342 37 1 3.2333 1.7408 2.6343 38 1 3.2183 2.9112 3.9769 39 1 3.5099 -1.2450 6.0092 40 1 4.3329 -2.2300 4.7762 41 1 5.7973 0.1591 5.1298 42 1 8.7279 0.7557 6.6073 43 1 1.4851 -0.8562 4.4373 44 1 2.3264 -2.0134 3.3787 45 1 3.1033 0.9889 -1.9972 46 1 3.8964 -0.2532 -3.9993 47 1 3.2389 -2.6083 -4.2931 48 1 1.0835 -2.5589 -0.7467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201891545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:51 Heat of formation + Delta-G solvation = -15.662828 kcal Electronic energy + Delta-G solvation = -29474.556091 eV Core-core repulsion = 25530.567739 eV Total energy + Delta-G solvation = -3943.988352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.18036 -40.07289 -38.50411 -35.87069 -34.86805 -34.57591 -32.83675 -32.34101 -30.90669 -30.25576 -28.64878 -26.67903 -25.81066 -24.69935 -23.76174 -23.12976 -22.01439 -21.46766 -20.91671 -19.27855 -17.61522 -17.35814 -17.13741 -16.66126 -16.41186 -16.31137 -15.72909 -15.37722 -14.91227 -14.57476 -14.38621 -14.24403 -13.89106 -13.83755 -13.69356 -13.28748 -13.21100 -13.14275 -12.84987 -12.68697 -12.52475 -12.24122 -12.02763 -11.89787 -11.64008 -11.54796 -11.34882 -10.96151 -10.78791 -10.76659 -10.24921 -10.09722 -9.97443 -9.73966 -9.63572 -9.61656 -9.40665 -9.15792 -8.81253 -8.58302 -6.82130 -5.67417 -2.95428 0.90276 1.09860 2.45881 2.78511 3.49092 3.54177 3.56784 3.63000 3.94888 4.06612 4.17937 4.41706 4.49788 4.57432 4.62687 4.66679 4.68065 4.75363 4.82097 4.88195 4.97532 5.19166 5.21303 5.24853 5.28573 5.34452 5.41325 5.42555 5.47078 5.57895 5.60009 5.65516 5.67135 5.82892 5.88102 5.95106 5.98434 6.02661 6.09611 6.35617 6.45723 6.50021 6.68287 6.80183 7.15009 7.77205 7.81316 8.00281 8.03573 8.50987 9.62574 10.21073 10.57168 11.55608 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002907 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.934936 B = 9630.323061 C =10779.308954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 H 0.105 0.895 4 C 0.510 3.490 5 O -0.521 6.521 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.169 4.169 9 C 0.074 3.926 10 O -0.366 6.366 11 C 0.090 3.910 12 H 0.050 0.950 13 C 0.166 3.834 14 N -0.725 5.725 15 C -0.236 4.236 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.081 3.919 24 C -0.119 4.119 25 C -0.068 4.068 26 C -0.175 4.175 27 C 0.096 3.904 28 N -0.486 5.486 29 C 0.135 3.865 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.387 0.613 42 H 0.253 0.747 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.154 0.846 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.020 4.862 -18.249 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.089 4.089 3 H 0.123 0.877 4 C 0.297 3.703 5 O -0.396 6.396 6 N -0.340 5.340 7 C -0.021 4.021 8 C -0.207 4.207 9 C -0.003 4.003 10 O -0.284 6.284 11 C 0.030 3.970 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.370 5.370 15 C -0.367 4.367 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.042 4.042 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.195 4.195 27 C -0.061 4.061 28 N -0.194 5.194 29 C -0.023 4.023 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.221 0.779 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.151 0.849 46 H 0.153 0.847 47 H 0.172 0.828 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.800 3.358 -18.112 27.044 hybrid contribution 0.923 0.857 0.453 1.339 sum -18.878 4.215 -17.659 26.191 Atomic orbital electron populations 1.22131 0.91752 1.03640 1.03704 1.20213 0.97915 1.00149 0.90588 0.87657 1.20523 0.80452 0.84890 0.84429 1.90775 1.36721 1.26015 1.86127 1.47890 1.51437 1.28665 1.06000 1.22253 0.93782 0.85764 1.00305 1.22554 0.98362 0.99865 0.99949 1.22097 0.91748 0.92282 0.94188 1.86445 1.84489 1.17944 1.39556 1.22345 0.93583 0.83198 0.97912 0.93175 1.20615 0.88676 0.93676 0.93259 1.42216 1.17867 1.31616 1.45271 1.19285 0.99367 1.06458 1.11583 0.91141 1.24738 0.98132 0.97916 1.00349 1.69693 1.21188 1.22211 1.45043 0.86111 0.80185 0.78436 0.81445 1.20560 1.21945 1.21932 1.22535 0.96888 0.97923 0.86898 1.20296 0.99809 0.96058 0.95968 1.21459 0.94509 1.00217 0.93217 1.22093 1.01973 0.96346 0.99080 1.22786 0.93616 0.92262 0.97398 1.67716 1.10540 1.38384 1.02760 1.22484 0.95741 0.90754 0.93293 0.91638 0.90318 0.91125 0.89518 0.91145 0.89648 0.89843 0.93706 0.89266 0.95597 0.94818 0.77894 0.93698 0.89810 0.88802 0.84908 0.84732 0.82848 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.53 37.16 0.32 -0.63 16 2 C -0.07 -0.58 2.09 -92.92 -0.19 -0.78 16 3 H 0.11 0.73 7.20 -51.93 -0.37 0.36 16 4 C 0.51 6.42 6.91 -10.99 -0.08 6.34 16 5 O -0.52 -8.89 14.55 5.55 0.08 -8.81 16 6 N -0.61 -6.93 2.18 -172.16 -0.38 -7.30 16 7 C 0.10 0.77 4.46 -3.19 -0.01 0.76 16 8 C -0.17 -1.48 5.79 -27.17 -0.16 -1.64 16 9 C 0.07 0.94 6.38 36.42 0.23 1.17 16 10 O -0.37 -6.48 9.18 -26.54 -0.24 -6.73 16 11 C 0.09 1.61 2.74 -25.53 -0.07 1.54 16 12 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 13 C 0.17 3.59 5.95 -4.04 -0.02 3.56 16 14 N -0.73 -19.67 5.49 -59.91 -0.33 -20.00 16 15 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 16 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 19 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 C 0.08 1.14 4.90 -3.58 -0.02 1.12 16 24 C -0.12 -1.26 4.40 -104.48 -0.46 -1.72 16 25 C -0.07 -0.63 9.81 -39.28 -0.39 -1.02 16 26 C -0.18 -1.56 10.11 -39.44 -0.40 -1.95 16 27 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 28 N -0.49 -6.22 10.36 -13.25 -0.14 -6.35 16 29 C 0.13 1.64 9.12 -17.55 -0.16 1.48 16 30 H 0.06 0.44 7.42 -51.93 -0.39 0.06 16 31 H 0.08 0.37 4.61 -51.93 -0.24 0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.48 4.96 -51.93 -0.26 0.22 16 34 H 0.07 0.42 7.55 -51.93 -0.39 0.03 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.83 8.01 -51.92 -0.42 0.42 16 37 H 0.04 0.57 7.40 -51.93 -0.38 0.18 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.39 11.17 7.53 -40.82 -0.31 10.86 16 42 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.08 1.06 8.11 -51.93 -0.42 0.63 16 44 H 0.09 1.42 7.28 -51.93 -0.38 1.04 16 45 H 0.13 0.91 8.00 -52.48 -0.42 0.49 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.15 1.75 7.53 -52.49 -0.40 1.36 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -36.97 380.28 -8.72 -45.69 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.30 Total: 6.83 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.85 Total: 1.38 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.12 Total: -62.24 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.16 Total: -15.54 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.97 -8.72 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.031 kcal (2) G-P(sol) polarization free energy of solvation -36.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds