Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47033 * 119.99472 * 2 1 3 5 5 O 1.21284 * 119.99753 * 120.00056 * 4 2 1 6 6 N 1.34772 * 120.00669 * 300.00281 * 4 2 1 7 7 C 1.47517 * 118.75269 * 359.97438 * 6 4 2 8 8 C 1.53573 * 111.02675 * 221.60861 * 7 6 4 9 9 C 1.51536 * 109.58552 * 39.97506 * 8 7 6 10 10 O 1.42157 * 108.75418 * 268.60159 * 9 8 7 11 11 C 1.38016 * 119.43811 * 87.23152 * 10 9 8 12 12 H 1.09000 * 109.47111 * 56.56705 * 11 10 9 13 13 C 1.52997 * 109.47157 * 176.56048 * 11 10 9 14 14 N 1.46500 * 109.46985 * 300.00398 * 13 11 10 15 15 C 1.36942 * 119.99475 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00189 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99697 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00183 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00310 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46581 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47465 * 119.99655 * 19 17 15 22 22 H 1.48496 * 109.47318 * 240.00268 * 19 17 15 23 23 C 1.45117 * 118.76389 * 179.73105 * 6 4 2 24 24 C 1.50699 * 109.47305 * 239.99977 * 2 1 3 25 25 C 1.38664 * 120.42392 * 120.02262 * 24 2 1 26 26 C 1.38633 * 118.42441 * 179.97438 * 25 24 2 27 27 C 1.38225 * 119.15790 * 359.97438 * 26 25 24 28 28 N 1.31852 * 120.76444 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72922 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46801 * 300.00242 * 1 2 3 32 32 H 1.09004 * 109.46658 * 60.00310 * 1 2 3 33 33 H 1.09005 * 109.16728 * 342.00480 * 7 6 4 34 34 H 1.09000 * 109.16821 * 101.25783 * 7 6 4 35 35 H 1.08999 * 109.45099 * 160.01600 * 8 7 6 36 36 H 1.09008 * 109.44590 * 279.96227 * 8 7 6 37 37 H 1.08998 * 109.58533 * 28.38193 * 9 8 7 38 38 H 1.08994 * 109.58726 * 148.67333 * 9 8 7 39 39 H 1.09009 * 109.46431 * 59.99743 * 13 11 10 40 40 H 1.08997 * 109.47227 * 179.97438 * 13 11 10 41 41 H 0.96990 * 120.00650 * 359.97438 * 14 13 11 42 42 H 0.96995 * 119.99964 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.45961 * 210.76006 * 23 6 4 44 44 H 1.09004 * 109.45485 * 330.71174 * 23 6 4 45 45 H 1.08004 * 120.78415 * 359.97438 * 25 24 2 46 46 H 1.07995 * 120.41946 * 180.25001 * 26 25 24 47 47 H 1.07994 * 119.61274 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.61820 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 0.8576 0.9519 2.5580 8 6 1.3610 1.8887 3.6660 9 6 2.8757 1.9308 3.6462 10 8 3.3722 0.9284 4.5234 11 6 3.5649 -0.3533 4.0490 12 1 4.2361 -0.3259 3.1906 13 6 4.1812 -1.2177 5.1507 14 7 5.4687 -0.6480 5.5555 15 6 6.2084 -1.2553 6.5350 16 1 5.8424 -2.1538 7.0094 17 6 7.4286 -0.7158 6.9182 18 7 7.8750 0.3790 6.3398 19 14 8.4381 -1.5444 8.2539 20 1 7.7214 -2.7512 8.7390 21 1 9.7582 -1.9418 7.7020 22 1 8.6372 -0.5994 9.3819 23 6 2.2003 -0.9581 3.6211 24 6 2.0324 -0.7104 -1.2304 25 6 2.8305 -0.0451 -2.1487 26 6 3.2700 -0.7387 -3.2657 27 6 2.9011 -2.0612 -3.4255 28 7 2.1406 -2.6620 -2.5315 29 6 1.7043 -2.0335 -1.4573 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 0.8719 1.4832 1.6063 34 1 -0.1650 0.6493 2.7834 35 1 0.9677 2.8916 3.4999 36 1 1.0209 1.5212 4.6342 37 1 3.2333 1.7408 2.6343 38 1 3.2183 2.9112 3.9769 39 1 3.5099 -1.2450 6.0092 40 1 4.3329 -2.2300 4.7762 41 1 5.7973 0.1591 5.1298 42 1 8.7279 0.7557 6.6073 43 1 1.4851 -0.8562 4.4373 44 1 2.3264 -2.0134 3.3787 45 1 3.1033 0.9889 -1.9972 46 1 3.8964 -0.2532 -3.9993 47 1 3.2389 -2.6083 -4.2931 48 1 1.0835 -2.5589 -0.7467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201891545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = -41.566338 kcal Electronic energy + Delta-G solvation = -29475.679352 eV Core-core repulsion = 25530.567739 eV Total energy + Delta-G solvation = -3945.111613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.08046 -40.96569 -39.65163 -37.02108 -36.30580 -35.66156 -34.26740 -33.08419 -32.66358 -31.08909 -29.98460 -27.73851 -26.97983 -25.79705 -24.69331 -24.49469 -23.26599 -22.34755 -22.25030 -20.15959 -19.27553 -18.47451 -18.12014 -17.76967 -17.57578 -17.24409 -16.73235 -16.64849 -16.10819 -15.96110 -15.40467 -15.19510 -15.08914 -14.83484 -14.75984 -14.57554 -14.51148 -14.03980 -13.95796 -13.77193 -13.59243 -13.25531 -13.13233 -13.03853 -12.81039 -12.61300 -12.49869 -12.32736 -12.22282 -12.08463 -11.94180 -11.80292 -11.43866 -11.00610 -10.90953 -10.63668 -10.54117 -10.40113 -9.91692 -9.65374 -9.03029 -7.95847 -5.25746 0.14718 0.35489 1.45376 1.47637 1.52543 1.57865 1.90223 2.54811 2.72369 2.85657 3.34831 3.37491 3.46540 3.62027 3.67862 3.84280 3.90017 3.98298 4.03336 4.07265 4.08450 4.15704 4.17558 4.29780 4.35735 4.39771 4.45386 4.52029 4.63100 4.68604 4.71517 4.79929 4.82998 4.86905 4.87110 4.91631 5.08016 5.14562 5.17273 5.20653 5.22065 5.33455 5.45570 5.51288 5.77270 6.24721 6.26739 6.75697 7.02902 7.09985 7.31146 8.05120 8.30692 9.28217 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002907 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.934936 B = 9630.323061 C =10779.308954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.058 4.058 3 H 0.133 0.867 4 C 0.504 3.496 5 O -0.577 6.577 6 N -0.604 5.604 7 C 0.094 3.906 8 C -0.158 4.158 9 C 0.063 3.937 10 O -0.397 6.397 11 C 0.107 3.893 12 H 0.017 0.983 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.248 4.248 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.095 3.905 24 C -0.128 4.128 25 C -0.075 4.075 26 C -0.172 4.172 27 C 0.079 3.921 28 N -0.521 5.521 29 C 0.111 3.889 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.175 0.825 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.875 6.615 -18.813 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 H 0.151 0.849 4 C 0.293 3.707 5 O -0.456 6.456 6 N -0.336 5.336 7 C -0.026 4.026 8 C -0.196 4.196 9 C -0.013 4.013 10 O -0.316 6.316 11 C 0.047 3.953 12 H 0.035 0.965 13 C 0.035 3.965 14 N -0.382 5.382 15 C -0.379 4.379 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.217 1.217 23 C -0.029 4.029 24 C -0.130 4.130 25 C -0.101 4.101 26 C -0.191 4.191 27 C -0.078 4.078 28 N -0.230 5.230 29 C -0.046 4.046 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.179 0.821 46 H 0.184 0.816 47 H 0.192 0.808 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.729 5.121 -18.677 29.107 hybrid contribution 1.495 0.351 0.575 1.640 sum -20.234 5.472 -18.102 27.695 Atomic orbital electron populations 1.22152 0.89372 1.03542 1.05618 1.20282 0.99704 1.00391 0.87547 0.84925 1.21294 0.79415 0.84306 0.85660 1.90754 1.39282 1.28617 1.86955 1.47986 1.51279 1.29520 1.04784 1.22662 0.94185 0.84179 1.01590 1.22477 0.94905 1.02287 0.99957 1.22422 0.94745 0.90884 0.93258 1.86361 1.85439 1.18314 1.41476 1.21919 0.94911 0.83626 0.94836 0.96540 1.20759 0.86879 0.94188 0.94713 1.42413 1.19608 1.31239 1.44958 1.19717 0.99847 1.06586 1.11784 0.90511 1.25651 0.99461 0.98815 1.03066 1.69860 1.21560 1.23856 1.46806 0.84993 0.78162 0.77809 0.78294 1.18921 1.21963 1.21650 1.22171 0.95154 0.96993 0.88631 1.20509 0.99974 0.95603 0.96917 1.21893 0.93704 1.01598 0.92909 1.22471 1.01371 0.95772 0.99483 1.23260 0.93421 0.93408 0.97672 1.67648 1.11918 1.39692 1.03709 1.22470 0.96773 0.91858 0.93470 0.92870 0.88199 0.89276 0.86458 0.88228 0.85850 0.90816 0.93882 0.88831 0.94891 0.95175 0.79441 0.93983 0.87853 0.90484 0.82057 0.81644 0.80756 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.53 71.98 0.61 -0.73 16 2 C -0.06 -0.88 2.09 -12.29 -0.03 -0.91 16 3 H 0.13 1.30 7.20 -2.39 -0.02 1.29 16 4 C 0.50 12.38 6.91 87.66 0.61 12.99 16 5 O -0.58 -20.55 14.55 -3.04 -0.04 -20.59 16 6 N -0.60 -12.88 2.18 -816.99 -1.78 -14.66 16 7 C 0.09 1.06 4.46 86.38 0.39 1.44 16 8 C -0.16 -2.22 5.79 30.31 0.18 -2.04 16 9 C 0.06 1.51 6.38 71.50 0.46 1.96 16 10 O -0.40 -14.17 9.18 -117.87 -1.08 -15.25 16 11 C 0.11 3.98 2.74 31.37 0.09 4.06 16 12 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 13 C 0.16 7.24 5.95 86.38 0.51 7.75 16 14 N -0.74 -41.51 5.49 -343.45 -1.89 -43.40 16 15 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 18 N -0.97 -62.39 13.06 21.65 0.28 -62.10 16 19 Si 0.98 48.16 29.55 68.60 2.03 50.18 16 20 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 C 0.10 2.67 4.90 87.42 0.43 3.10 16 24 C -0.13 -2.58 4.40 -19.77 -0.09 -2.67 16 25 C -0.08 -1.25 9.81 22.47 0.22 -1.03 16 26 C -0.17 -2.74 10.11 22.36 0.23 -2.52 16 27 C 0.08 1.58 11.18 84.69 0.95 2.53 16 28 N -0.52 -13.77 10.36 -195.84 -2.03 -15.80 16 29 C 0.11 2.80 9.12 84.67 0.77 3.57 16 30 H 0.05 0.64 7.42 -2.39 -0.02 0.62 16 31 H 0.10 0.45 4.61 -2.39 -0.01 0.44 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.65 4.96 -2.38 -0.01 0.63 16 34 H 0.10 0.66 7.55 -2.39 -0.02 0.65 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.24 8.01 -2.38 -0.02 1.22 16 37 H 0.04 1.04 7.40 -2.39 -0.02 1.02 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.37 22.54 7.53 -92.72 -0.70 21.84 16 42 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.10 2.47 8.11 -2.39 -0.02 2.46 16 44 H 0.08 2.43 7.28 -2.38 -0.02 2.41 16 45 H 0.16 1.65 8.00 -2.91 -0.02 1.63 16 46 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 48 H 0.14 3.54 7.53 -2.91 -0.02 3.52 16 Total: -1.00 -85.54 380.28 2.38 -83.16 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.27 Total: 29.20 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.62 Total: 9.28 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -5.41 Total: -135.96 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.13 Total: -35.85 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.18 kcal Total: -85.54 2.38 -83.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.590 kcal (2) G-P(sol) polarization free energy of solvation -85.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds