Wall clock time and date at job start Tue Mar 31 2020 17:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 116.99799 * 2 1 4 4 C 1.38753 * 120.47714 * 0.02562 * 3 2 1 5 5 N 1.31810 * 120.68446 * 180.02562 * 4 3 2 6 6 C 1.31874 * 121.78086 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.88971 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.38947 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47050 * 90.00381 * 8 7 6 10 10 C 1.50694 * 109.47433 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00308 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00414 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.64107 * 34.29614 * 13 12 10 15 15 C 1.54327 * 110.72067 * 271.15704 * 13 12 10 16 16 N 1.47021 * 107.26847 * 219.43759 * 15 13 12 17 17 C 1.36936 * 125.64476 * 178.97567 * 16 15 13 18 18 H 1.07995 * 120.00116 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00234 * 359.97388 * 17 16 15 20 20 N 1.31621 * 119.99580 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00205 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46903 * 90.00591 * 21 19 17 23 23 H 1.48493 * 109.47167 * 210.00501 * 21 19 17 24 24 H 1.48495 * 109.47038 * 330.00751 * 21 19 17 25 25 C 1.47426 * 108.70545 * 358.94626 * 16 15 13 26 26 C 1.55117 * 104.94440 * 23.99635 * 25 16 15 27 27 H 1.08999 * 110.93319 * 81.21637 * 26 25 16 28 28 C 1.52995 * 111.16552 * 205.13275 * 26 25 16 29 29 C 1.38587 * 119.22153 * 0.02562 * 7 6 5 30 30 H 1.09006 * 109.47392 * 299.99402 * 1 2 3 31 31 H 1.08995 * 109.47625 * 60.00275 * 1 2 3 32 32 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.65468 * 0.04860 * 4 3 2 34 34 H 1.07996 * 119.55243 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47618 * 209.99990 * 8 7 6 36 36 H 1.09003 * 109.47521 * 330.00552 * 8 7 6 37 37 H 1.08999 * 109.46837 * 299.99780 * 9 8 7 38 38 H 1.08999 * 109.47411 * 59.99303 * 9 8 7 39 39 H 0.97003 * 119.99929 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.88237 * 338.85997 * 15 13 12 41 41 H 1.08997 * 109.88018 * 100.02333 * 15 13 12 42 42 H 0.97005 * 119.99669 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.36727 * 142.96852 * 25 16 15 44 44 H 1.09000 * 110.36172 * 265.17288 * 25 16 15 45 45 H 1.08994 * 109.47404 * 172.17055 * 28 26 25 46 46 H 1.08997 * 109.47245 * 292.17424 * 28 26 25 47 47 H 1.09004 * 109.47135 * 52.17429 * 28 26 25 48 48 H 1.07996 * 120.80659 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0000 6 6 3.2078 3.6722 -0.0005 7 6 4.0178 2.5524 0.0000 8 6 5.5178 2.6966 -0.0012 9 6 6.0265 2.7466 1.4410 10 6 7.5265 2.8915 1.4399 11 8 8.1295 2.9485 0.3891 12 7 8.1980 2.9576 2.6065 13 6 9.6563 3.0978 2.6055 14 1 9.9832 3.7055 1.7618 15 6 10.3379 1.7135 2.5779 16 7 11.5057 1.7842 3.4683 17 6 12.3681 0.7550 3.7365 18 1 13.2002 0.9087 4.4076 19 6 12.1730 -0.4860 3.1459 20 7 11.1591 -0.6732 2.3276 21 14 13.3499 -1.8899 3.5113 22 1 12.8620 -2.6508 4.6895 23 1 13.4237 -2.7928 2.3348 24 1 14.6994 -1.3419 3.8002 25 6 11.5948 3.1469 4.0239 26 6 10.1503 3.7065 3.9444 27 1 9.5484 3.3510 4.7807 28 6 10.1526 5.2352 3.8841 29 6 3.4343 1.2953 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 0.2213 2.3268 0.0017 34 1 3.6567 4.6544 -0.0013 35 1 5.9644 1.8450 -0.5145 36 1 5.7940 3.6168 -0.5160 37 1 5.5800 3.5983 1.9543 38 1 5.7502 1.8265 1.9559 39 1 7.7157 2.9123 3.4469 40 1 9.6449 0.9519 2.9351 41 1 10.6591 1.4787 1.5631 42 1 11.0229 -1.5403 1.9146 43 1 11.9332 3.1129 5.0594 44 1 12.2704 3.7573 3.4247 45 1 9.1415 5.5928 3.6897 46 1 10.5031 5.6358 4.8353 47 1 10.8151 5.5663 3.0843 48 1 4.0428 0.4031 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207929093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:39 Heat of formation + Delta-G solvation = -21.827927 kcal Electronic energy + Delta-G solvation = -28004.379415 eV Core-core repulsion = 24060.123724 eV Total energy + Delta-G solvation = -3944.255691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96851 -39.57865 -38.51805 -37.53447 -34.64908 -33.86084 -32.60668 -31.70174 -30.36836 -30.04712 -28.02103 -27.62340 -25.67201 -25.00466 -23.80521 -23.39915 -21.65608 -20.51512 -19.94941 -19.44087 -18.16561 -17.38877 -16.97221 -16.89140 -16.65860 -16.22147 -15.82912 -15.29386 -14.87985 -14.50709 -14.29126 -13.93940 -13.79106 -13.57735 -13.31763 -13.12040 -13.04410 -12.79964 -12.66118 -12.35578 -12.29883 -12.07588 -11.92320 -11.86290 -11.67958 -11.33396 -11.14188 -11.00699 -10.77486 -10.58715 -10.38137 -9.97088 -9.92624 -9.79089 -9.70221 -9.69164 -9.38105 -8.72130 -8.60870 -8.44202 -6.82197 -5.68118 -3.03251 0.80751 1.02608 2.80165 2.99904 3.40710 3.42476 3.46125 3.48599 3.61232 4.18989 4.34284 4.50672 4.54107 4.67202 4.72365 4.76774 4.86966 4.89562 5.02252 5.07321 5.08597 5.26628 5.30900 5.34898 5.45402 5.53439 5.56184 5.67995 5.71586 5.77736 5.99327 6.00551 6.03335 6.12249 6.15751 6.21164 6.24482 6.36377 6.50558 6.63565 6.80705 6.86544 6.95357 7.58212 7.60103 7.67242 7.86201 7.94266 8.27078 8.61836 9.23051 9.83697 10.48697 11.42467 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.002383 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.149339 B =11748.093900 C =13391.920844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.079 3.921 4 C 0.008 3.992 5 N -0.449 5.449 6 C 0.064 3.936 7 C -0.086 4.086 8 C -0.063 4.063 9 C -0.135 4.135 10 C 0.512 3.488 11 O -0.540 6.540 12 N -0.713 5.713 13 C 0.120 3.880 14 H 0.087 0.913 15 C 0.174 3.826 16 N -0.606 5.606 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.141 3.859 26 C -0.114 4.114 27 H 0.076 0.924 28 C -0.137 4.137 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.395 0.605 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.014 8.089 -1.538 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.032 3.968 4 C -0.150 4.150 5 N -0.158 5.158 6 C -0.094 4.094 7 C -0.088 4.088 8 C -0.101 4.101 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.416 6.416 12 N -0.363 5.363 13 C 0.015 3.985 14 H 0.105 0.895 15 C 0.048 3.952 16 N -0.333 5.333 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.014 3.986 26 C -0.134 4.134 27 H 0.095 0.905 28 C -0.194 4.194 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.229 0.771 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.980 8.436 -2.375 22.737 hybrid contribution 0.537 -1.617 0.637 1.819 sum -20.443 6.819 -1.738 21.621 Atomic orbital electron populations 1.23122 0.78007 1.04411 1.01525 1.86106 1.21632 1.26094 1.88490 1.20085 0.93168 0.85721 0.97871 1.22860 1.00420 0.87310 1.04407 1.67528 1.12181 1.26422 1.09635 1.22615 0.88522 0.98807 0.99480 1.20840 0.97561 0.92785 0.97631 1.20316 0.88213 1.05303 0.96282 1.21632 0.92959 1.04504 0.98379 1.20453 0.89438 0.76325 0.84058 1.90718 1.70218 1.49568 1.31142 1.45943 1.08144 1.74193 1.08068 1.22489 0.78541 1.00039 0.97435 0.89510 1.21468 0.88423 0.90018 0.95290 1.44414 1.30224 1.06350 1.52316 1.19045 1.05107 0.88547 1.23126 0.90354 1.24832 0.98475 0.97762 0.99413 1.69979 1.30237 1.22845 1.33525 0.86119 0.80207 0.82244 0.77186 1.21660 1.21676 1.20688 1.21616 0.92543 0.87346 0.97074 1.22642 0.99094 0.94633 0.97040 0.90526 1.21687 1.01205 0.95042 1.01504 1.20934 0.91596 0.98822 1.01855 0.92390 0.92419 0.87865 0.82742 0.82405 0.89322 0.89343 0.88989 0.88762 0.77106 0.93222 0.93480 0.93763 0.94047 0.96090 0.93113 0.92829 0.92608 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.95 10.51 -19.46 -0.20 -3.15 16 3 C 0.08 0.81 6.71 -39.07 -0.26 0.54 16 4 C 0.01 0.08 10.22 -17.37 -0.18 -0.10 16 5 N -0.45 -4.98 10.35 -13.13 -0.14 -5.12 16 6 C 0.06 0.64 10.85 -17.54 -0.19 0.45 16 7 C -0.09 -0.87 5.15 -104.51 -0.54 -1.41 16 8 C -0.06 -0.67 4.66 -27.88 -0.13 -0.80 16 9 C -0.13 -1.45 5.68 -27.88 -0.16 -1.61 16 10 C 0.51 7.93 7.83 -10.99 -0.09 7.85 16 11 O -0.54 -10.69 15.67 5.55 0.09 -10.61 16 12 N -0.71 -10.93 5.12 -52.03 -0.27 -11.20 16 13 C 0.12 2.25 2.74 -66.09 -0.18 2.07 16 14 H 0.09 1.75 7.52 -51.93 -0.39 1.36 16 15 C 0.17 4.30 5.13 -3.06 -0.02 4.28 16 16 N -0.61 -15.56 3.40 -169.95 -0.58 -16.14 16 17 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -27.53 10.31 55.49 0.57 -26.95 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.14 2.86 6.72 -2.42 -0.02 2.84 16 26 C -0.11 -1.87 3.27 -88.36 -0.29 -2.16 16 27 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 28 C -0.14 -1.78 9.32 37.15 0.35 -1.44 16 29 C -0.11 -1.11 9.81 -39.14 -0.38 -1.50 16 30 H 0.06 0.24 7.68 -51.93 -0.40 -0.15 16 31 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 32 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.16 1.09 6.32 -52.49 -0.33 0.76 16 34 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.40 4.88 8.54 -40.82 -0.35 4.53 16 40 H 0.05 1.35 7.27 -51.93 -0.38 0.97 16 41 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 48 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -35.10 393.68 -8.61 -43.71 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.65 Total: 3.01 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.34 Total: 3.20 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.41 Total: -59.41 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.12 Total: -13.76 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.10 -8.61 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207929093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.878 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds