Wall clock time and date at job start Tue Mar 31 2020 17:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 116.99799 * 2 1 4 4 C 1.38753 * 120.47714 * 0.02562 * 3 2 1 5 5 N 1.31810 * 120.68446 * 180.02562 * 4 3 2 6 6 C 1.31874 * 121.78086 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.88971 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.38947 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47050 * 90.00381 * 8 7 6 10 10 C 1.50694 * 109.47433 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00308 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00414 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.64107 * 34.29614 * 13 12 10 15 15 C 1.54327 * 110.72067 * 271.15704 * 13 12 10 16 16 N 1.47021 * 107.26847 * 219.43759 * 15 13 12 17 17 C 1.36936 * 125.64476 * 178.97567 * 16 15 13 18 18 H 1.07995 * 120.00116 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00234 * 359.97388 * 17 16 15 20 20 N 1.31621 * 119.99580 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00205 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46903 * 90.00591 * 21 19 17 23 23 H 1.48493 * 109.47167 * 210.00501 * 21 19 17 24 24 H 1.48495 * 109.47038 * 330.00751 * 21 19 17 25 25 C 1.47426 * 108.70545 * 358.94626 * 16 15 13 26 26 C 1.55117 * 104.94440 * 23.99635 * 25 16 15 27 27 H 1.08999 * 110.93319 * 81.21637 * 26 25 16 28 28 C 1.52995 * 111.16552 * 205.13275 * 26 25 16 29 29 C 1.38587 * 119.22153 * 0.02562 * 7 6 5 30 30 H 1.09006 * 109.47392 * 299.99402 * 1 2 3 31 31 H 1.08995 * 109.47625 * 60.00275 * 1 2 3 32 32 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.65468 * 0.04860 * 4 3 2 34 34 H 1.07996 * 119.55243 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47618 * 209.99990 * 8 7 6 36 36 H 1.09003 * 109.47521 * 330.00552 * 8 7 6 37 37 H 1.08999 * 109.46837 * 299.99780 * 9 8 7 38 38 H 1.08999 * 109.47411 * 59.99303 * 9 8 7 39 39 H 0.97003 * 119.99929 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.88237 * 338.85997 * 15 13 12 41 41 H 1.08997 * 109.88018 * 100.02333 * 15 13 12 42 42 H 0.97005 * 119.99669 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.36727 * 142.96852 * 25 16 15 44 44 H 1.09000 * 110.36172 * 265.17288 * 25 16 15 45 45 H 1.08994 * 109.47404 * 172.17055 * 28 26 25 46 46 H 1.08997 * 109.47245 * 292.17424 * 28 26 25 47 47 H 1.09004 * 109.47135 * 52.17429 * 28 26 25 48 48 H 1.07996 * 120.80659 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0000 6 6 3.2078 3.6722 -0.0005 7 6 4.0178 2.5524 0.0000 8 6 5.5178 2.6966 -0.0012 9 6 6.0265 2.7466 1.4410 10 6 7.5265 2.8915 1.4399 11 8 8.1295 2.9485 0.3891 12 7 8.1980 2.9576 2.6065 13 6 9.6563 3.0978 2.6055 14 1 9.9832 3.7055 1.7618 15 6 10.3379 1.7135 2.5779 16 7 11.5057 1.7842 3.4683 17 6 12.3681 0.7550 3.7365 18 1 13.2002 0.9087 4.4076 19 6 12.1730 -0.4860 3.1459 20 7 11.1591 -0.6732 2.3276 21 14 13.3499 -1.8899 3.5113 22 1 12.8620 -2.6508 4.6895 23 1 13.4237 -2.7928 2.3348 24 1 14.6994 -1.3419 3.8002 25 6 11.5948 3.1469 4.0239 26 6 10.1503 3.7065 3.9444 27 1 9.5484 3.3510 4.7807 28 6 10.1526 5.2352 3.8841 29 6 3.4343 1.2953 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 0.2213 2.3268 0.0017 34 1 3.6567 4.6544 -0.0013 35 1 5.9644 1.8450 -0.5145 36 1 5.7940 3.6168 -0.5160 37 1 5.5800 3.5983 1.9543 38 1 5.7502 1.8265 1.9559 39 1 7.7157 2.9123 3.4469 40 1 9.6449 0.9519 2.9351 41 1 10.6591 1.4787 1.5631 42 1 11.0229 -1.5403 1.9146 43 1 11.9332 3.1129 5.0594 44 1 12.2704 3.7573 3.4247 45 1 9.1415 5.5928 3.6897 46 1 10.5031 5.6358 4.8353 47 1 10.8151 5.5663 3.0843 48 1 4.0428 0.4031 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207929093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:38 Heat of formation + Delta-G solvation = -46.301754 kcal Electronic energy + Delta-G solvation = -28005.440680 eV Core-core repulsion = 24060.123724 eV Total energy + Delta-G solvation = -3945.316956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70875 -40.92531 -39.32840 -39.00481 -35.67940 -35.44442 -34.23255 -32.49455 -32.15642 -30.94900 -29.41403 -28.36532 -27.38521 -26.11773 -24.98691 -24.50834 -22.67370 -21.97374 -21.50796 -20.79704 -18.89226 -18.87154 -18.12491 -17.92698 -17.60095 -17.34513 -16.89481 -16.80850 -16.30354 -15.63823 -15.53206 -15.20136 -14.81265 -14.67174 -14.58231 -14.27333 -14.06049 -14.05850 -14.02583 -13.62327 -13.33994 -13.20266 -13.01055 -12.97698 -12.88139 -12.70955 -12.57824 -12.40962 -12.20390 -12.02741 -11.98570 -11.85527 -11.64160 -11.44030 -10.89439 -10.74799 -10.46529 -10.42147 -9.93608 -9.43787 -8.92681 -7.85172 -5.22959 0.05232 0.25659 1.43636 1.46411 1.55125 1.73893 2.19157 2.29189 2.49329 2.75320 3.32795 3.47373 3.59234 3.64313 3.73125 3.79450 3.94034 3.98503 4.06446 4.09651 4.13191 4.16410 4.33604 4.38556 4.45546 4.48777 4.55606 4.63670 4.69750 4.74640 4.75309 4.89068 4.91405 4.95011 5.08239 5.09372 5.17301 5.27284 5.31195 5.33215 5.45029 5.51374 5.51902 5.64986 5.81817 6.16612 6.22941 6.67774 6.92416 7.06542 7.38843 7.75687 8.39378 9.23787 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.002383 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.149339 B =11748.093900 C =13391.920844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.074 3.926 4 C 0.008 3.992 5 N -0.467 5.467 6 C 0.061 3.939 7 C -0.084 4.084 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.507 3.493 11 O -0.588 6.588 12 N -0.704 5.704 13 C 0.136 3.864 14 H 0.072 0.928 15 C 0.188 3.812 16 N -0.629 5.629 17 C -0.241 4.241 18 H 0.088 0.912 19 C -0.071 4.071 20 N -0.952 5.952 21 Si 0.981 3.019 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.131 3.869 26 C -0.093 4.093 27 H 0.092 0.908 28 C -0.128 4.128 29 C -0.121 4.121 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.414 0.586 40 H 0.017 0.983 41 H -0.013 1.013 42 H 0.244 0.756 43 H 0.054 0.946 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.560 9.660 0.312 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.027 3.973 4 C -0.150 4.150 5 N -0.176 5.176 6 C -0.097 4.097 7 C -0.086 4.086 8 C -0.095 4.095 9 C -0.161 4.161 10 C 0.295 3.705 11 O -0.468 6.468 12 N -0.355 5.355 13 C 0.029 3.971 14 H 0.090 0.910 15 C 0.062 3.938 16 N -0.355 5.355 17 C -0.370 4.370 18 H 0.105 0.895 19 C -0.264 4.264 20 N -0.601 5.601 21 Si 0.809 3.191 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.191 1.191 25 C 0.006 3.994 26 C -0.113 4.113 27 H 0.110 0.890 28 C -0.186 4.186 29 C -0.148 4.148 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.251 0.749 40 H 0.036 0.964 41 H 0.006 0.994 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.546 10.047 -0.470 24.688 hybrid contribution 1.001 -2.130 0.034 2.354 sum -21.545 7.917 -0.436 22.958 Atomic orbital electron populations 1.23435 0.75884 1.05996 1.02685 1.86088 1.23911 1.25897 1.88371 1.20153 0.93100 0.86309 0.97765 1.23238 1.01587 0.86751 1.03401 1.67589 1.12590 1.27023 1.10368 1.22904 0.88365 0.99490 0.98927 1.20675 0.96833 0.92846 0.98209 1.20195 0.88696 1.04456 0.96144 1.21622 0.88946 1.06553 0.98936 1.21342 0.91363 0.74672 0.83105 1.90703 1.71653 1.51574 1.32884 1.45805 1.06634 1.73847 1.09244 1.22018 0.80304 0.96076 0.98687 0.90993 1.21118 0.88081 0.92872 0.91747 1.44744 1.30048 1.08078 1.52669 1.19507 1.05564 0.89396 1.22566 0.89460 1.25738 1.00373 1.00538 0.99727 1.70244 1.32201 1.22756 1.34897 0.85043 0.78688 0.78802 0.76603 1.20908 1.22523 1.19137 1.21899 0.95399 0.84844 0.97277 1.22562 0.96142 0.97045 0.95561 0.88967 1.21641 1.02569 0.91678 1.02678 1.21076 0.92253 0.99024 1.02414 0.91160 0.91251 0.86221 0.80351 0.80535 0.91477 0.89220 0.85352 0.87649 0.74926 0.96439 0.99430 0.94701 0.92765 0.95861 0.91079 0.90472 0.93175 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.33 -5.96 10.51 -92.53 -0.97 -6.93 16 3 C 0.07 1.45 6.71 22.60 0.15 1.60 16 4 C 0.01 0.14 10.22 84.82 0.87 1.01 16 5 N -0.47 -9.54 10.35 -195.45 -2.02 -11.56 16 6 C 0.06 1.12 10.85 84.68 0.92 2.04 16 7 C -0.08 -1.63 5.15 -19.79 -0.10 -1.73 16 8 C -0.06 -1.19 4.66 29.85 0.14 -1.05 16 9 C -0.12 -2.43 5.68 29.85 0.17 -2.26 16 10 C 0.51 15.67 7.83 87.66 0.69 16.35 16 11 O -0.59 -24.18 15.67 -3.05 -0.05 -24.23 16 12 N -0.70 -21.05 5.12 -436.92 -2.24 -23.29 16 13 C 0.14 5.13 2.74 46.18 0.13 5.25 16 14 H 0.07 2.97 7.52 -2.39 -0.02 2.95 16 15 C 0.19 9.78 5.13 86.73 0.44 10.22 16 16 N -0.63 -32.99 3.40 -691.59 -2.35 -35.34 16 17 C -0.24 -13.79 10.28 84.03 0.86 -12.93 16 18 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 19 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 20 N -0.95 -59.88 10.31 21.65 0.22 -59.66 16 21 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.13 5.19 6.72 86.93 0.58 5.77 16 26 C -0.09 -2.88 3.27 -9.33 -0.03 -2.91 16 27 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 28 C -0.13 -2.89 9.32 71.98 0.67 -2.22 16 29 C -0.12 -2.52 9.81 22.56 0.22 -2.30 16 30 H 0.07 0.44 7.68 -2.38 -0.02 0.42 16 31 H 0.07 0.44 7.68 -2.39 -0.02 0.42 16 32 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.18 2.10 6.32 -2.91 -0.02 2.08 16 34 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 36 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.41 9.31 8.54 -92.71 -0.79 8.51 16 40 H 0.02 1.00 7.27 -2.39 -0.02 0.98 16 41 H -0.01 -0.79 7.50 -2.39 -0.02 -0.81 16 42 H 0.24 15.01 8.31 -92.70 -0.77 14.24 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.05 1.21 8.08 -2.38 -0.02 1.19 16 48 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -81.27 393.68 2.08 -79.19 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.17 Total: 18.48 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.29 Total: 14.40 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -6.38 Total: -129.85 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.02 Total: -31.16 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -81.27 2.08 -79.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207929093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.886 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds