Wall clock time and date at job start Tue Mar 31 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46997 * 2 1 4 4 N 1.46500 * 109.47017 * 119.99511 * 2 1 3 5 5 C 1.34771 * 120.00308 * 274.99866 * 4 2 1 6 6 O 1.21353 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.49451 * 120.00102 * 179.97438 * 5 4 2 8 8 O 1.21347 * 120.00107 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00047 * 180.02562 * 7 5 4 10 10 C 1.46496 * 119.99922 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47029 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99863 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99675 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47598 * 89.99866 * 16 14 12 18 18 H 1.48500 * 109.47118 * 209.99788 * 16 14 12 19 19 H 1.48505 * 109.46928 * 329.99611 * 16 14 12 20 20 C 1.50696 * 109.47131 * 240.00014 * 2 1 3 21 21 C 1.38288 * 119.92554 * 100.00223 * 20 2 1 22 22 C 1.38100 * 120.07490 * 179.97438 * 21 20 2 23 23 C 1.38914 * 119.92399 * 359.97438 * 22 21 20 24 24 N 1.39675 * 120.07712 * 179.97438 * 23 22 21 25 25 C 1.46507 * 119.99622 * 0.02562 * 24 23 22 26 26 C 1.46498 * 120.00353 * 179.72315 * 24 23 22 27 27 C 1.38915 * 119.85317 * 0.25647 * 23 22 21 28 28 C 1.38104 * 119.92020 * 359.48918 * 27 23 22 29 29 H 1.09002 * 109.47111 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.46780 * 60.00149 * 1 2 3 31 31 H 1.08991 * 109.46623 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99340 * 95.00646 * 4 2 1 33 33 H 0.97001 * 119.99764 * 0.02562 * 9 7 5 34 34 H 1.08999 * 109.47213 * 300.00207 * 10 9 7 35 35 H 1.09002 * 109.47429 * 59.99978 * 10 9 7 36 36 H 1.09004 * 109.47267 * 299.99553 * 11 10 9 37 37 H 1.09001 * 109.47138 * 60.00206 * 11 10 9 38 38 H 0.97007 * 119.99592 * 180.02562 * 15 14 12 39 39 H 1.08000 * 119.96699 * 359.95344 * 21 20 2 40 40 H 1.07999 * 120.04149 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47067 * 60.00272 * 25 24 23 42 42 H 1.08998 * 109.46861 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46860 * 299.99623 * 25 24 23 44 44 H 1.09009 * 109.46732 * 90.00268 * 26 24 23 45 45 H 1.08998 * 109.47268 * 209.99630 * 26 24 23 46 46 H 1.08996 * 109.47244 * 330.00204 * 26 24 23 47 47 H 1.07991 * 120.04046 * 179.72622 * 27 23 22 48 48 H 1.07995 * 119.96395 * 180.25137 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8581 1.1592 2.4117 7 6 2.6447 -0.7227 3.5776 8 8 2.9333 -1.9002 3.5232 9 7 2.7730 -0.0504 4.7387 10 6 3.2613 -0.7410 5.9348 11 6 3.3116 0.2419 7.1063 12 6 3.8145 -0.4684 8.3366 13 1 4.0720 -1.5161 8.2880 14 6 3.9448 0.2191 9.5246 15 7 3.6307 1.4949 9.5840 16 14 4.5675 -0.6613 11.0499 17 1 6.0473 -0.5552 11.1134 18 1 3.9741 -0.0363 12.2592 19 1 4.1760 -2.0926 10.9897 20 6 2.0324 -0.7104 -1.2304 21 6 2.4586 0.0213 -2.3238 22 6 2.9200 -0.6266 -3.4527 23 6 2.9562 -2.0148 -3.4891 24 7 3.4218 -2.6733 -4.6295 25 6 3.8732 -1.8998 -5.7889 26 6 3.4649 -4.1372 -4.6637 27 6 2.5228 -2.7467 -2.3908 28 6 2.0675 -2.0924 -1.2631 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 2.2491 -1.6316 1.1526 33 1 2.5419 0.8906 4.7822 34 1 2.5890 -1.5633 6.1795 35 1 4.2607 -1.1329 5.7457 36 1 3.9837 1.0644 6.8618 37 1 2.3120 0.6333 7.2953 38 1 3.7227 1.9786 10.4197 39 1 2.4303 1.1005 -2.2949 40 1 3.2524 -0.0546 -4.3065 41 1 4.7052 -1.2591 -5.4967 42 1 4.1974 -2.5806 -6.5759 43 1 3.0523 -1.2842 -6.1569 44 1 2.5204 -4.5195 -5.0511 45 1 4.2805 -4.4616 -5.3099 46 1 3.6257 -4.5197 -3.6558 47 1 2.5455 -3.8261 -2.4175 48 1 1.7342 -2.6608 -0.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261112960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:28 Heat of formation + Delta-G solvation = -65.418147 kcal Electronic energy + Delta-G solvation = -27246.803144 eV Core-core repulsion = 23300.657239 eV Total energy + Delta-G solvation = -3946.145905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.81894 -40.71182 -39.65069 -37.93340 -36.84117 -35.85220 -34.80937 -32.43819 -32.00821 -31.67363 -29.83543 -28.99683 -27.49425 -26.14811 -25.28474 -23.58505 -23.23163 -22.61319 -21.39940 -21.08115 -19.77308 -18.57835 -18.24787 -17.87491 -17.13579 -16.89975 -16.61282 -16.40097 -16.25328 -15.94497 -15.80778 -15.72190 -15.12154 -14.94071 -14.67330 -14.42508 -14.37609 -14.30329 -14.17436 -13.48819 -13.40933 -13.30231 -13.24820 -12.98630 -12.94096 -12.85969 -12.77797 -12.62196 -12.52037 -12.27788 -12.00047 -11.68198 -11.66359 -11.43290 -10.77874 -10.61698 -10.60925 -10.33768 -10.19196 -9.84147 -8.22809 -8.18029 -6.34027 0.32736 0.52789 0.55451 1.35652 1.44234 1.44350 1.55915 2.13124 2.25871 2.40518 2.68443 2.93613 3.12117 3.44213 3.68193 3.88707 4.06981 4.19807 4.23222 4.30521 4.39397 4.44824 4.45590 4.49338 4.53299 4.66043 4.72581 4.78309 4.81564 4.84811 4.87730 4.89855 4.94200 5.08543 5.12105 5.21817 5.23742 5.37208 5.42237 5.43950 5.55418 5.72678 5.76819 5.90449 5.96705 6.13483 6.35829 6.36612 6.54063 6.71332 6.80268 6.93568 7.35434 8.89176 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.001748 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.789524 B =16013.591377 C =16669.248250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.190 3.810 3 H 0.090 0.910 4 N -0.683 5.683 5 C 0.516 3.484 6 O -0.539 6.539 7 C 0.500 3.500 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.264 1.264 20 C -0.162 4.162 21 C -0.061 4.061 22 C -0.200 4.200 23 C 0.206 3.794 24 N -0.645 5.645 25 C 0.091 3.909 26 C 0.087 3.913 27 C -0.203 4.203 28 C -0.069 4.069 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.135 0.865 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -7.866 -34.308 35.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 H 0.108 0.892 4 N -0.337 5.337 5 C 0.296 3.704 6 O -0.416 6.416 7 C 0.280 3.720 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.020 4.020 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.165 4.165 21 C -0.080 4.080 22 C -0.222 4.222 23 C 0.103 3.897 24 N -0.356 5.356 25 C -0.052 4.052 26 C -0.056 4.056 27 C -0.225 4.225 28 C -0.088 4.088 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.254 0.746 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.152 0.848 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.064 -7.830 -34.383 35.396 hybrid contribution 0.295 -0.091 1.094 1.137 sum -2.769 -7.921 -33.289 34.330 Atomic orbital electron populations 1.22138 0.93215 1.02990 1.02797 1.19873 0.94833 0.96165 0.80403 0.89220 1.45993 1.64310 1.15115 1.08236 1.19952 0.78953 0.86651 0.84837 1.90749 1.49799 1.15982 1.85098 1.20362 0.79614 0.86944 0.85050 1.90710 1.50557 1.16111 1.85426 1.46069 1.63410 1.15291 1.09172 1.21481 0.98473 0.95737 0.82799 1.19187 0.96545 0.94369 0.91878 1.21452 1.44628 0.97166 0.95114 0.91704 1.25921 0.95375 0.95624 1.02472 1.70084 1.49029 1.09721 1.27861 0.85395 0.78518 0.78854 0.77963 1.19802 1.20733 1.18780 1.19515 1.07205 0.93970 0.95784 1.20906 0.94984 1.00277 0.91831 1.20792 1.08635 0.92403 1.00398 1.18074 0.92524 0.91933 0.87146 1.46611 1.69236 1.06061 1.13682 1.21744 0.99258 0.96833 0.87326 1.21810 1.02118 0.78558 1.03067 1.20821 1.07725 1.00318 0.93638 1.20804 0.96825 0.93575 0.97586 0.93211 0.89602 0.91560 0.74613 0.74905 0.91996 0.92054 0.97399 0.97340 0.92591 0.84584 0.84671 0.92787 0.89075 0.92479 0.92885 0.89914 0.91390 0.84760 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.46 71.98 0.68 -2.08 16 2 C 0.19 3.82 2.77 44.25 0.12 3.94 16 3 H 0.09 1.96 7.44 -2.39 -0.02 1.94 16 4 N -0.68 -16.32 5.02 -447.43 -2.25 -18.57 16 5 C 0.52 15.73 7.85 87.27 0.69 16.41 16 6 O -0.54 -18.33 16.14 -3.26 -0.05 -18.38 16 7 C 0.50 17.52 7.89 87.27 0.69 18.21 16 8 O -0.55 -20.90 16.48 -3.24 -0.05 -20.95 16 9 N -0.69 -25.76 5.55 -464.42 -2.58 -28.34 16 10 C 0.14 5.88 5.61 86.38 0.48 6.37 16 11 C 0.02 0.91 5.09 29.85 0.15 1.06 16 12 C -0.55 -30.35 9.11 25.60 0.23 -30.11 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 0.27 5.46 84.65 0.46 0.73 16 15 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 16 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 C -0.16 -2.90 4.96 -19.84 -0.10 -3.00 16 21 C -0.06 -0.99 9.66 22.25 0.21 -0.77 16 22 C -0.20 -3.06 9.31 22.40 0.21 -2.85 16 23 C 0.21 3.27 6.55 38.22 0.25 3.52 16 24 N -0.64 -7.71 3.41 -747.26 -2.55 -10.25 16 25 C 0.09 0.67 9.40 127.77 1.20 1.87 16 26 C 0.09 0.69 10.15 127.77 1.30 1.99 16 27 C -0.20 -3.27 9.20 22.40 0.21 -3.07 16 28 C -0.07 -1.18 9.04 22.25 0.20 -0.98 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 9.17 6.33 -92.71 -0.59 8.58 16 33 H 0.41 14.94 7.94 -92.71 -0.74 14.21 16 34 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 39 H 0.14 1.77 8.03 -2.91 -0.02 1.75 16 40 H 0.14 1.60 6.73 -2.91 -0.02 1.58 16 41 H 0.05 0.41 7.95 -2.39 -0.02 0.39 16 42 H 0.09 0.32 7.79 -2.39 -0.02 0.30 16 43 H 0.06 0.39 7.95 -2.39 -0.02 0.37 16 44 H 0.05 0.37 8.14 -2.38 -0.02 0.36 16 45 H 0.08 0.38 7.92 -2.39 -0.02 0.36 16 46 H 0.07 0.57 6.22 -2.39 -0.01 0.55 16 47 H 0.13 1.76 6.16 -2.92 -0.02 1.74 16 48 H 0.13 1.94 6.91 -2.91 -0.02 1.92 16 Total: -1.00 -68.53 400.82 1.49 -67.04 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.34 Total: 27.36 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.99 Total: 11.23 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -7.08 Total: -111.95 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.11 Total: -39.33 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.53 1.49 -67.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261112960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.623 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds