Wall clock time and date at job start Tue Mar 31 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 N 1.46503 * 109.46787 * 240.00194 * 2 1 3 5 5 C 1.34776 * 119.99746 * 85.00412 * 4 2 1 6 6 O 1.21344 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99732 * 179.97438 * 5 4 2 8 8 O 1.21352 * 120.00295 * 359.97438 * 7 5 4 9 9 N 1.34775 * 120.00100 * 179.97438 * 7 5 4 10 10 C 1.46496 * 120.00308 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47273 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46975 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99828 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00155 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46965 * 90.00266 * 16 14 12 18 18 H 1.48500 * 109.47225 * 209.99871 * 16 14 12 19 19 H 1.48501 * 109.47342 * 330.00096 * 16 14 12 20 20 C 1.50700 * 109.47175 * 120.00246 * 2 1 3 21 21 C 1.38279 * 119.92414 * 260.00063 * 20 2 1 22 22 C 1.38104 * 120.07648 * 179.97438 * 21 20 2 23 23 C 1.38915 * 119.92273 * 359.97438 * 22 21 20 24 24 N 1.39670 * 120.07504 * 180.02562 * 23 22 21 25 25 C 1.46499 * 120.00271 * 354.28324 * 24 23 22 26 26 C 1.46502 * 120.00165 * 174.28422 * 24 23 22 27 27 C 1.38910 * 119.84887 * 0.02562 * 23 22 21 28 28 C 1.38096 * 119.92589 * 0.02562 * 27 23 22 29 29 H 1.09005 * 109.47282 * 299.99397 * 1 2 3 30 30 H 1.08998 * 109.47539 * 59.99895 * 1 2 3 31 31 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00004 * 264.99642 * 4 2 1 33 33 H 0.96999 * 119.99882 * 359.97438 * 9 7 5 34 34 H 1.09005 * 109.46975 * 300.00220 * 10 9 7 35 35 H 1.08996 * 109.47380 * 59.99714 * 10 9 7 36 36 H 1.08998 * 109.46673 * 299.99527 * 11 10 9 37 37 H 1.08996 * 109.47266 * 59.99503 * 11 10 9 38 38 H 0.96998 * 119.99983 * 179.97438 * 15 14 12 39 39 H 1.08000 * 119.96687 * 0.02562 * 21 20 2 40 40 H 1.07999 * 120.04244 * 179.72698 * 22 21 20 41 41 H 1.08997 * 109.47357 * 89.99719 * 25 24 23 42 42 H 1.09000 * 109.47368 * 210.00504 * 25 24 23 43 43 H 1.09007 * 109.47130 * 330.00223 * 25 24 23 44 44 H 1.09001 * 109.47231 * 5.05880 * 26 24 23 45 45 H 1.09006 * 109.47245 * 125.05008 * 26 24 23 46 46 H 1.08994 * 109.47396 * 245.05329 * 26 24 23 47 47 H 1.08006 * 120.03872 * 179.97438 * 27 23 22 48 48 H 1.08007 * 119.96419 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8581 1.1591 -2.4116 7 6 2.6457 -0.7225 -3.5773 8 8 2.9351 -1.8997 -3.5227 9 7 2.7739 -0.0503 -4.7384 10 6 3.2632 -0.7405 -5.9343 11 6 3.3145 0.2426 -7.1055 12 6 3.8185 -0.4673 -8.3356 13 1 4.0760 -1.5150 -8.2869 14 6 3.9498 0.2204 -9.5233 15 7 3.6358 1.4962 -9.5827 16 14 4.5751 -0.6594 -11.0479 17 1 3.4267 -1.2330 -11.7943 18 1 5.2969 0.3058 -11.9154 19 1 5.4989 -1.7504 -10.6459 20 6 2.0324 -0.7105 1.2304 21 6 2.4585 0.0211 2.3237 22 6 2.9190 -0.6267 3.4531 23 6 2.9532 -2.0150 3.4902 24 7 3.4178 -2.6734 4.6310 25 6 3.9860 -1.9040 5.7406 26 6 3.3369 -4.1336 4.7179 27 6 2.5244 -2.7467 2.3901 28 6 2.0661 -2.0925 1.2636 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 2.5423 0.8906 -4.7821 34 1 4.2629 -1.1316 -5.7446 35 1 2.5917 -1.5633 -6.1793 36 1 2.3151 0.6340 -7.2953 37 1 3.9863 1.0652 -6.8603 38 1 3.7285 1.9801 -10.4182 39 1 2.4305 1.1004 2.2948 40 1 3.2558 -0.0548 4.3051 41 1 3.1942 -1.6361 6.4401 42 1 4.7359 -2.5060 6.2538 43 1 4.4508 -0.9971 5.3535 44 1 2.9733 -4.5344 3.7717 45 1 4.3261 -4.5404 4.9286 46 1 2.6514 -4.4126 5.5181 47 1 2.5501 -3.8262 2.4155 48 1 1.7330 -2.6609 0.4078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261112961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:36 Heat of formation + Delta-G solvation = -40.576328 kcal Electronic energy + Delta-G solvation = -27246.928419 eV Core-core repulsion = 23301.859736 eV Total energy + Delta-G solvation = -3945.068683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64899 -39.91897 -38.38305 -37.15781 -35.38402 -34.73157 -32.84203 -31.65920 -31.31737 -29.78231 -29.15512 -28.60408 -25.89150 -25.32045 -23.91327 -22.94133 -22.15617 -20.99294 -20.42957 -20.05046 -18.55474 -17.62822 -16.87617 -16.41150 -15.94408 -15.80071 -15.61304 -15.52382 -15.17410 -14.89061 -14.49748 -14.41110 -14.18640 -13.93230 -13.85094 -13.54408 -13.40486 -13.03374 -12.93555 -12.75086 -12.51578 -12.43675 -12.38231 -12.30744 -11.95370 -11.42053 -11.27501 -11.20822 -11.04671 -10.98834 -10.65201 -10.37447 -10.13487 -9.76596 -9.41485 -9.30889 -9.21104 -9.15201 -8.66077 -8.39743 -7.61482 -6.08469 -4.12054 1.15553 1.21409 1.67876 2.62134 2.70639 3.30206 3.36434 3.40206 3.48031 3.55803 3.96712 4.40043 4.41377 4.42804 4.51561 4.70908 4.81006 4.84533 4.87158 5.03261 5.07495 5.11605 5.13747 5.16576 5.25132 5.28365 5.35559 5.41550 5.50733 5.68858 5.73889 5.93561 5.98913 6.10861 6.17392 6.21321 6.26705 6.45590 6.51102 6.63275 6.72736 6.82599 7.09052 7.14844 7.49768 7.60252 7.72244 7.89073 7.98875 8.24158 8.38174 8.93540 9.52728 11.02978 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.001747 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.402007 B =16021.756619 C =16662.058006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.189 3.811 3 H 0.097 0.903 4 N -0.700 5.700 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.497 3.503 8 O -0.534 6.534 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.010 3.990 12 C -0.523 4.523 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.151 4.151 21 C -0.056 4.056 22 C -0.194 4.194 23 C 0.215 3.785 24 N -0.640 5.640 25 C 0.094 3.906 26 C 0.089 3.911 27 C -0.195 4.195 28 C -0.061 4.061 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.410 0.590 33 H 0.410 0.590 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.125 0.875 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -6.576 32.687 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 H 0.115 0.885 4 N -0.354 5.354 5 C 0.290 3.710 6 O -0.396 6.396 7 C 0.276 3.724 8 O -0.412 6.412 9 N -0.337 5.337 10 C -0.003 4.003 11 C -0.027 4.027 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.153 4.153 21 C -0.075 4.075 22 C -0.217 4.217 23 C 0.113 3.887 24 N -0.352 5.352 25 C -0.049 4.049 26 C -0.054 4.054 27 C -0.217 4.217 28 C -0.080 4.080 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.143 0.857 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.432 -6.505 32.698 33.515 hybrid contribution 0.365 -0.445 -0.786 0.974 sum -3.068 -6.950 31.913 32.804 Atomic orbital electron populations 1.22180 0.94114 1.02577 1.02788 1.19763 0.94194 0.96620 0.80923 0.88523 1.45965 1.65862 1.14942 1.08666 1.20441 0.78655 0.87026 0.84840 1.90746 1.48514 1.15397 1.84910 1.20006 0.80424 0.87172 0.84760 1.90724 1.50024 1.15406 1.85085 1.46225 1.62985 1.15116 1.09388 1.21926 0.98428 0.96902 0.83035 1.19361 0.98240 0.94272 0.90831 1.21016 1.44550 0.96664 0.93955 0.92172 1.25001 0.95305 0.94878 0.99094 1.69961 1.48100 1.08158 1.26825 0.86497 0.78982 0.79384 0.82586 1.20562 1.21165 1.19747 1.19609 1.05872 0.93777 0.96041 1.20723 0.95317 0.99557 0.91907 1.20630 1.08683 0.92222 1.00134 1.17874 0.92737 0.91602 0.86444 1.46311 1.67055 1.05580 1.16237 1.21604 0.97818 0.96620 0.88857 1.21710 1.01308 0.79696 1.02729 1.20681 1.07909 0.99617 0.93459 1.20691 0.96616 0.93602 0.97135 0.91293 0.91603 0.92181 0.75234 0.75386 0.91898 0.91889 0.95646 0.95637 0.92793 0.85759 0.85928 0.93436 0.91580 0.91285 0.90245 0.92603 0.93009 0.85686 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.19 1.96 2.77 -69.08 -0.19 1.77 16 3 H 0.10 1.08 7.43 -51.93 -0.39 0.69 16 4 N -0.70 -8.57 5.02 -55.36 -0.28 -8.85 16 5 C 0.51 7.83 7.85 -11.58 -0.09 7.74 16 6 O -0.52 -8.86 16.14 5.50 0.09 -8.77 16 7 C 0.50 8.76 7.89 -11.58 -0.09 8.67 16 8 O -0.53 -10.30 16.48 5.50 0.09 -10.21 16 9 N -0.69 -12.75 5.55 -60.73 -0.34 -13.08 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 11 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 12 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.15 -1.41 4.96 -104.59 -0.52 -1.93 16 21 C -0.06 -0.48 9.66 -39.62 -0.38 -0.86 16 22 C -0.19 -1.60 9.16 -39.38 -0.36 -1.97 16 23 C 0.21 1.84 6.54 -83.79 -0.55 1.29 16 24 N -0.64 -4.43 3.41 -187.55 -0.64 -5.06 16 25 C 0.09 0.45 10.10 59.85 0.60 1.06 16 26 C 0.09 0.44 10.62 59.85 0.64 1.08 16 27 C -0.19 -1.66 9.31 -39.38 -0.37 -2.03 16 28 C -0.06 -0.55 9.04 -39.62 -0.36 -0.91 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.41 4.68 6.33 -40.82 -0.26 4.43 16 33 H 0.41 7.27 7.94 -40.82 -0.32 6.94 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 0.88 8.03 -52.49 -0.42 0.46 16 40 H 0.12 0.81 6.30 -52.49 -0.33 0.48 16 41 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 43 H 0.07 0.32 6.45 -51.93 -0.33 -0.02 16 44 H 0.08 0.37 5.31 -51.93 -0.28 0.10 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.13 0.87 5.74 -52.48 -0.30 0.57 16 48 H 0.12 0.98 6.91 -52.48 -0.36 0.62 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -32.50 399.39 -8.42 -40.92 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.18 Total: 6.00 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.89 Total: 2.15 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.52 Total: -52.46 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.18 Total: -18.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.50 -8.42 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261112961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.344 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds