Wall clock time and date at job start Tue Mar 31 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 N 1.46503 * 109.46787 * 240.00194 * 2 1 3 5 5 C 1.34776 * 119.99746 * 85.00412 * 4 2 1 6 6 O 1.21344 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99732 * 179.97438 * 5 4 2 8 8 O 1.21352 * 120.00295 * 359.97438 * 7 5 4 9 9 N 1.34775 * 120.00100 * 179.97438 * 7 5 4 10 10 C 1.46496 * 120.00308 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47273 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46975 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99828 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00155 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46965 * 90.00266 * 16 14 12 18 18 H 1.48500 * 109.47225 * 209.99871 * 16 14 12 19 19 H 1.48501 * 109.47342 * 330.00096 * 16 14 12 20 20 C 1.50700 * 109.47175 * 120.00246 * 2 1 3 21 21 C 1.38279 * 119.92414 * 260.00063 * 20 2 1 22 22 C 1.38104 * 120.07648 * 179.97438 * 21 20 2 23 23 C 1.38915 * 119.92273 * 359.97438 * 22 21 20 24 24 N 1.39670 * 120.07504 * 180.02562 * 23 22 21 25 25 C 1.46499 * 120.00271 * 354.28324 * 24 23 22 26 26 C 1.46502 * 120.00165 * 174.28422 * 24 23 22 27 27 C 1.38910 * 119.84887 * 0.02562 * 23 22 21 28 28 C 1.38096 * 119.92589 * 0.02562 * 27 23 22 29 29 H 1.09005 * 109.47282 * 299.99397 * 1 2 3 30 30 H 1.08998 * 109.47539 * 59.99895 * 1 2 3 31 31 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00004 * 264.99642 * 4 2 1 33 33 H 0.96999 * 119.99882 * 359.97438 * 9 7 5 34 34 H 1.09005 * 109.46975 * 300.00220 * 10 9 7 35 35 H 1.08996 * 109.47380 * 59.99714 * 10 9 7 36 36 H 1.08998 * 109.46673 * 299.99527 * 11 10 9 37 37 H 1.08996 * 109.47266 * 59.99503 * 11 10 9 38 38 H 0.96998 * 119.99983 * 179.97438 * 15 14 12 39 39 H 1.08000 * 119.96687 * 0.02562 * 21 20 2 40 40 H 1.07999 * 120.04244 * 179.72698 * 22 21 20 41 41 H 1.08997 * 109.47357 * 89.99719 * 25 24 23 42 42 H 1.09000 * 109.47368 * 210.00504 * 25 24 23 43 43 H 1.09007 * 109.47130 * 330.00223 * 25 24 23 44 44 H 1.09001 * 109.47231 * 5.05880 * 26 24 23 45 45 H 1.09006 * 109.47245 * 125.05008 * 26 24 23 46 46 H 1.08994 * 109.47396 * 245.05329 * 26 24 23 47 47 H 1.08006 * 120.03872 * 179.97438 * 27 23 22 48 48 H 1.08007 * 119.96419 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8581 1.1591 -2.4116 7 6 2.6457 -0.7225 -3.5773 8 8 2.9351 -1.8997 -3.5227 9 7 2.7739 -0.0503 -4.7384 10 6 3.2632 -0.7405 -5.9343 11 6 3.3145 0.2426 -7.1055 12 6 3.8185 -0.4673 -8.3356 13 1 4.0760 -1.5150 -8.2869 14 6 3.9498 0.2204 -9.5233 15 7 3.6358 1.4962 -9.5827 16 14 4.5751 -0.6594 -11.0479 17 1 3.4267 -1.2330 -11.7943 18 1 5.2969 0.3058 -11.9154 19 1 5.4989 -1.7504 -10.6459 20 6 2.0324 -0.7105 1.2304 21 6 2.4585 0.0211 2.3237 22 6 2.9190 -0.6267 3.4531 23 6 2.9532 -2.0150 3.4902 24 7 3.4178 -2.6734 4.6310 25 6 3.9860 -1.9040 5.7406 26 6 3.3369 -4.1336 4.7179 27 6 2.5244 -2.7467 2.3901 28 6 2.0661 -2.0925 1.2636 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 2.5423 0.8906 -4.7821 34 1 4.2629 -1.1316 -5.7446 35 1 2.5917 -1.5633 -6.1793 36 1 2.3151 0.6340 -7.2953 37 1 3.9863 1.0652 -6.8603 38 1 3.7285 1.9801 -10.4182 39 1 2.4305 1.1004 2.2948 40 1 3.2558 -0.0548 4.3051 41 1 3.1942 -1.6361 6.4401 42 1 4.7359 -2.5060 6.2538 43 1 4.4508 -0.9971 5.3535 44 1 2.9733 -4.5344 3.7717 45 1 4.3261 -4.5404 4.9286 46 1 2.6514 -4.4126 5.5181 47 1 2.5501 -3.8262 2.4155 48 1 1.7330 -2.6609 0.4078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261112961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:35 Heat of formation + Delta-G solvation = -61.682853 kcal Electronic energy + Delta-G solvation = -27247.843667 eV Core-core repulsion = 23301.859736 eV Total energy + Delta-G solvation = -3945.983930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81919 -40.72810 -39.65489 -37.93701 -36.83960 -35.84440 -34.80884 -32.44009 -32.04169 -31.67345 -29.82523 -29.01432 -27.49380 -26.14830 -25.28935 -23.59592 -23.23482 -22.61374 -21.39461 -21.07423 -19.78110 -18.57877 -18.30741 -17.87596 -17.13376 -16.90052 -16.60671 -16.39507 -16.25750 -15.95589 -15.82921 -15.74110 -15.12049 -14.94400 -14.67431 -14.48049 -14.40610 -14.30307 -14.19127 -13.40550 -13.38201 -13.31144 -13.25018 -12.94297 -12.92023 -12.82907 -12.80079 -12.63652 -12.52116 -12.27727 -11.99220 -11.68038 -11.60927 -11.43288 -10.79422 -10.62469 -10.60844 -10.33947 -10.19138 -9.84533 -8.22757 -8.16863 -6.34006 0.32846 0.52598 0.55146 1.35741 1.44259 1.44381 1.55924 2.13239 2.25558 2.40538 2.68525 2.93034 3.12142 3.44302 3.67875 3.85147 4.01044 4.23349 4.24366 4.31377 4.39445 4.45643 4.47670 4.51747 4.52458 4.62853 4.70886 4.77214 4.81627 4.82534 4.87012 4.90933 4.95586 5.08620 5.14345 5.21623 5.23828 5.36498 5.42658 5.45215 5.55475 5.72818 5.76890 5.89730 5.96827 6.13523 6.34859 6.36731 6.54742 6.71452 6.80331 6.93677 7.35473 8.89224 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.001747 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.402007 B =16021.756619 C =16662.058006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.190 3.810 3 H 0.090 0.910 4 N -0.683 5.683 5 C 0.516 3.484 6 O -0.539 6.539 7 C 0.500 3.500 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.264 1.264 20 C -0.163 4.163 21 C -0.060 4.060 22 C -0.202 4.202 23 C 0.207 3.793 24 N -0.645 5.645 25 C 0.089 3.911 26 C 0.083 3.917 27 C -0.205 4.205 28 C -0.068 4.068 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.138 0.862 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -7.778 34.073 35.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 H 0.108 0.892 4 N -0.337 5.337 5 C 0.296 3.704 6 O -0.416 6.416 7 C 0.280 3.720 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.020 4.020 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.165 4.165 21 C -0.079 4.079 22 C -0.224 4.224 23 C 0.105 3.895 24 N -0.357 5.357 25 C -0.054 4.054 26 C -0.059 4.059 27 C -0.227 4.227 28 C -0.087 4.087 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.251 0.749 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.155 0.845 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.153 -7.738 34.148 35.155 hybrid contribution 0.283 -0.106 -1.064 1.106 sum -2.870 -7.843 33.084 34.122 Atomic orbital electron populations 1.22140 0.93223 1.02995 1.02791 1.19873 0.94826 0.96166 0.80407 0.89223 1.45994 1.64319 1.15115 1.08229 1.19949 0.78953 0.86647 0.84837 1.90747 1.49802 1.15985 1.85089 1.20365 0.79622 0.86943 0.85048 1.90711 1.50557 1.16120 1.85418 1.46067 1.63376 1.15311 1.09185 1.21481 0.98456 0.95744 0.82811 1.19186 0.96541 0.94370 0.91880 1.21450 1.44622 0.97152 0.95130 0.91702 1.25919 0.95395 0.95605 1.02468 1.70080 1.49115 1.09688 1.27816 0.85396 0.78609 0.78312 0.78421 1.19766 1.20749 1.18805 1.19517 1.07239 0.93985 0.95784 1.20908 0.94928 1.00288 0.91789 1.20835 1.08649 0.92426 1.00532 1.18091 0.92451 0.91968 0.87027 1.46577 1.66518 1.06456 1.16108 1.21743 0.98333 0.96817 0.88461 1.21841 1.02161 0.78784 1.03136 1.20869 1.08036 1.00403 0.93431 1.20806 0.96730 0.93570 0.97601 0.89601 0.93229 0.91550 0.74607 0.74907 0.92081 0.91970 0.97351 0.97388 0.92588 0.84569 0.84500 0.92845 0.90189 0.91208 0.90202 0.91633 0.92104 0.84485 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.46 71.98 0.68 -2.06 16 2 C 0.19 3.79 2.77 44.25 0.12 3.91 16 3 H 0.09 1.94 7.43 -2.39 -0.02 1.93 16 4 N -0.68 -16.22 5.02 -447.43 -2.25 -18.47 16 5 C 0.52 15.67 7.85 87.27 0.69 16.36 16 6 O -0.54 -18.27 16.14 -3.23 -0.05 -18.32 16 7 C 0.50 17.47 7.89 87.27 0.69 18.16 16 8 O -0.55 -20.85 16.48 -3.25 -0.05 -20.90 16 9 N -0.69 -25.71 5.55 -464.41 -2.58 -28.29 16 10 C 0.14 5.87 5.61 86.38 0.48 6.36 16 11 C 0.02 0.91 5.09 29.85 0.15 1.06 16 12 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 0.27 5.46 84.65 0.46 0.74 16 15 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 16 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 C -0.16 -2.87 4.96 -19.84 -0.10 -2.97 16 21 C -0.06 -0.96 9.66 22.25 0.21 -0.74 16 22 C -0.20 -3.04 9.16 22.40 0.21 -2.84 16 23 C 0.21 3.24 6.54 38.22 0.25 3.49 16 24 N -0.65 -7.78 3.41 -747.27 -2.55 -10.33 16 25 C 0.09 0.69 10.10 127.77 1.29 1.98 16 26 C 0.08 0.68 10.62 127.77 1.36 2.04 16 27 C -0.21 -3.25 9.31 22.40 0.21 -3.04 16 28 C -0.07 -1.15 9.04 22.25 0.20 -0.95 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 9.10 6.33 -92.71 -0.59 8.52 16 33 H 0.41 14.91 7.94 -92.71 -0.74 14.18 16 34 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.14 1.74 8.03 -2.91 -0.02 1.72 16 40 H 0.14 1.57 6.30 -2.91 -0.02 1.55 16 41 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.08 0.39 8.07 -2.39 -0.02 0.37 16 43 H 0.07 0.52 6.45 -2.38 -0.02 0.51 16 44 H 0.08 0.63 5.31 -2.39 -0.01 0.62 16 45 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.14 1.72 5.74 -2.91 -0.02 1.70 16 48 H 0.13 1.90 6.91 -2.91 -0.02 1.88 16 Total: -1.00 -68.34 399.39 1.64 -66.70 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.33 Total: 27.35 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 7.14 Total: 11.40 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -7.08 Total: -111.85 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.11 Total: -39.23 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.34 1.64 -66.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261112961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.019 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds