Wall clock time and date at job start Tue Mar 31 2020 17:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.45908 * 2 1 4 4 C 1.53039 * 109.45936 * 240.03073 * 2 1 3 5 5 C 1.53187 * 109.31389 * 178.61443 * 4 2 1 6 6 N 1.46928 * 108.77684 * 54.63468 * 5 4 2 7 7 C 1.34778 * 120.63071 * 126.37086 * 6 5 4 8 8 O 1.21538 * 120.00141 * 185.71635 * 7 6 5 9 9 C 1.47890 * 119.99781 * 5.70929 * 7 6 5 10 10 C 1.36295 * 119.75489 * 85.74250 * 9 7 6 11 11 C 1.40404 * 119.90085 * 179.97438 * 10 9 7 12 12 C 1.36113 * 119.42163 * 359.97438 * 11 10 9 13 13 C 1.41235 * 119.50757 * 359.97438 * 12 11 10 14 14 O 1.21964 * 119.95740 * 179.97438 * 13 12 11 15 15 N 1.34677 * 120.08624 * 0.02610 * 13 12 11 16 16 C 1.46497 * 119.69817 * 179.97438 * 15 13 12 17 17 C 1.46919 * 118.73799 * 306.64487 * 6 5 4 18 18 H 1.08998 * 109.58626 * 293.56846 * 17 6 5 19 19 C 1.53000 * 109.58428 * 173.14069 * 17 6 5 20 20 N 1.46497 * 109.47184 * 68.85965 * 19 17 6 21 21 C 1.36931 * 120.00411 * 174.32368 * 20 19 17 22 22 H 1.08008 * 120.00087 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00444 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99596 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00008 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47233 * 90.00808 * 25 23 21 27 27 H 1.48506 * 109.46995 * 210.00447 * 25 23 21 28 28 H 1.48500 * 109.47600 * 330.00129 * 25 23 21 29 29 C 1.52764 * 109.01022 * 53.30738 * 17 6 5 30 30 H 1.09009 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47074 * 299.96463 * 1 2 3 32 32 H 1.08994 * 109.47404 * 59.97258 * 1 2 3 33 33 H 1.09001 * 109.49989 * 58.66174 * 4 2 1 34 34 H 1.09005 * 109.52850 * 298.58329 * 4 2 1 35 35 H 1.09004 * 109.58706 * 294.84821 * 5 4 2 36 36 H 1.09009 * 109.70550 * 174.49341 * 5 4 2 37 37 H 1.08001 * 120.04717 * 359.97144 * 10 9 7 38 38 H 1.08002 * 120.28999 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.24389 * 179.72009 * 12 11 10 40 40 H 1.08999 * 109.47191 * 274.03115 * 16 15 13 41 41 H 1.08999 * 109.47349 * 34.03645 * 16 15 13 42 42 H 1.09005 * 109.47036 * 154.02918 * 16 15 13 43 43 H 1.09009 * 109.46768 * 188.85723 * 19 17 6 44 44 H 1.08990 * 109.47378 * 308.85462 * 19 17 6 45 45 H 0.97004 * 120.00176 * 354.32733 * 20 19 17 46 46 H 0.97005 * 119.99604 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.57061 * 185.55003 * 29 17 6 48 48 H 1.08999 * 109.38560 * 65.51057 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0001 8 8 5.2860 -2.7821 1.0474 9 6 5.5468 -2.7271 -1.2744 10 6 6.6464 -2.1034 -1.7839 11 6 7.2049 -2.5468 -2.9934 12 6 6.6391 -3.5993 -3.6451 13 6 5.5007 -4.2281 -3.0942 14 8 4.9869 -5.1716 -3.6715 15 7 4.9813 -3.7864 -1.9328 16 6 3.7999 -4.4445 -1.3693 17 6 3.5672 -0.6923 1.2642 18 1 3.9097 0.3369 1.3714 19 6 4.0831 -1.5323 2.4343 20 7 5.5297 -1.3449 2.5696 21 6 6.1974 -1.9077 3.6243 22 1 5.6576 -2.4902 4.3563 23 6 7.5682 -1.7306 3.7522 24 7 8.2261 -1.0213 2.8598 25 14 8.4791 -2.4991 5.1906 26 1 8.9408 -3.8594 4.8144 27 1 9.6517 -1.6576 5.5404 28 1 7.5692 -2.5910 6.3606 29 6 2.0399 -0.7207 1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2209 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9142 0.3409 -1.3674 36 1 3.9437 -1.2832 -2.0986 37 1 7.0873 -1.2694 -1.2582 38 1 8.0759 -2.0569 -3.4031 39 1 7.0552 -3.9485 -4.5786 40 1 2.8998 -4.0080 -1.8019 41 1 3.8335 -5.5097 -1.5983 42 1 3.7877 -4.3057 -0.2882 43 1 3.5884 -1.2176 3.3533 44 1 3.8688 -2.5846 2.2485 45 1 6.0146 -0.8221 1.9120 46 1 9.1840 -0.8972 2.9494 47 1 1.6572 -0.2207 2.1398 48 1 1.6973 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264000452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:21 Heat of formation + Delta-G solvation = 18.072170 kcal Electronic energy + Delta-G solvation = -30915.556066 eV Core-core repulsion = 26973.030573 eV Total energy + Delta-G solvation = -3942.525493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49791 -40.06763 -37.66588 -36.63450 -34.71973 -34.37641 -33.81414 -32.16679 -30.09444 -29.92751 -28.29159 -27.61265 -25.59027 -24.74788 -23.37793 -22.78363 -22.54407 -21.63833 -20.19650 -19.51131 -17.58299 -17.26782 -17.04562 -16.61193 -16.21644 -15.56405 -15.37318 -15.01147 -14.60492 -14.56802 -14.51501 -14.13409 -13.81306 -13.60348 -13.36289 -13.18114 -12.96454 -12.88336 -12.67881 -12.35725 -12.28825 -12.01664 -11.92186 -11.83509 -11.70012 -11.58933 -11.12716 -11.00961 -10.81669 -10.76085 -10.55403 -10.35469 -10.09445 -10.02385 -9.93506 -9.60123 -8.88438 -8.70640 -8.29972 -7.90476 -6.64029 -5.65542 -2.85790 0.76099 1.88505 2.35275 2.98866 3.23078 3.50526 3.55329 3.55878 3.66371 4.32867 4.57362 4.60717 4.66054 4.73407 4.74529 4.94342 5.03219 5.16964 5.20339 5.23551 5.29857 5.33111 5.41932 5.47951 5.48693 5.55796 5.59768 5.64758 5.67753 5.71017 5.80456 5.91469 5.93509 6.00581 6.02003 6.02753 6.12134 6.28514 6.31063 6.40976 6.44948 6.52224 6.75336 7.07630 7.08619 7.59625 7.79513 8.04096 8.48455 8.53346 9.64373 10.21044 10.55316 11.58128 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.005528 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.568905 B = 5064.125157 C = 7376.130610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.603 5.603 7 C 0.510 3.490 8 O -0.413 6.413 9 C 0.146 3.854 10 C -0.193 4.193 11 C -0.011 4.011 12 C -0.244 4.244 13 C 0.515 3.485 14 O -0.560 6.560 15 N -0.484 5.484 16 C 0.059 3.941 17 C 0.143 3.857 18 H 0.074 0.926 19 C 0.157 3.843 20 N -0.695 5.695 21 C -0.214 4.214 22 H 0.066 0.934 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.902 3.098 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.284 1.284 29 C -0.121 4.121 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.039 0.961 45 H 0.379 0.621 46 H 0.251 0.749 47 H 0.076 0.924 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 3.481 -12.438 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.012 4.012 6 N -0.341 5.341 7 C 0.291 3.709 8 O -0.278 6.278 9 C 0.035 3.965 10 C -0.217 4.217 11 C -0.033 4.033 12 C -0.266 4.266 13 C 0.317 3.683 14 O -0.443 6.443 15 N -0.197 5.197 16 C -0.083 4.083 17 C 0.040 3.960 18 H 0.092 0.908 19 C 0.030 3.970 20 N -0.338 5.338 21 C -0.346 4.346 22 H 0.084 0.916 23 C -0.212 4.212 24 N -0.586 5.586 25 Si 0.734 3.266 26 H -0.220 1.220 27 H -0.220 1.220 28 H -0.210 1.210 29 C -0.160 4.160 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.213 0.787 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.041 2.435 -11.974 17.871 hybrid contribution 0.976 -0.165 0.439 1.083 sum -12.065 2.270 -11.534 16.845 Atomic orbital electron populations 1.21812 0.95114 1.01750 1.01567 1.21115 0.95527 0.99693 0.94684 0.90909 1.21977 0.95036 1.01319 0.98264 1.21626 0.94094 0.99483 0.86026 1.47768 1.43591 1.35968 1.06765 1.17894 0.81620 0.83982 0.87355 1.91324 1.56027 1.52612 1.27856 1.20709 0.95075 0.88230 0.92504 1.20850 0.97681 1.04726 0.98402 1.21426 0.96691 0.92951 0.92255 1.22209 0.99247 1.00954 1.04163 1.17287 0.85875 0.85076 0.80031 1.90905 1.63728 1.29557 1.60134 1.45504 1.26692 1.26873 1.20612 1.22166 0.85968 0.99984 1.00168 1.21492 0.92733 0.98273 0.83460 0.90785 1.20945 0.86988 0.96959 0.92116 1.42289 1.01338 1.60835 1.29319 1.19138 0.90426 1.24332 1.00712 0.91609 1.24613 0.96405 1.01388 0.98822 1.69637 1.07503 1.45031 1.36435 0.86244 0.79497 0.78607 0.82207 1.22044 1.22023 1.20996 1.21910 0.94924 1.01329 0.97868 0.92777 0.92578 0.92858 0.90930 0.91654 0.91209 0.90689 0.82947 0.84320 0.83433 0.90769 0.88880 0.89263 0.96142 0.94337 0.78688 0.93900 0.90539 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.81 2.68 -90.58 -0.24 -1.06 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.11 5.36 -26.61 -0.14 -1.25 16 5 C 0.11 1.17 6.32 -3.71 -0.02 1.15 16 6 N -0.60 -8.46 2.98 -166.56 -0.50 -8.96 16 7 C 0.51 8.75 4.73 -12.31 -0.06 8.69 16 8 O -0.41 -9.15 10.61 5.33 0.06 -9.09 16 9 C 0.15 2.26 4.35 -82.33 -0.36 1.90 16 10 C -0.19 -2.77 9.70 -39.47 -0.38 -3.15 16 11 C -0.01 -0.14 10.08 -39.53 -0.40 -0.54 16 12 C -0.24 -3.23 10.00 -39.21 -0.39 -3.63 16 13 C 0.52 8.23 7.43 -15.17 -0.11 8.11 16 14 O -0.56 -10.42 16.71 4.95 0.08 -10.33 16 15 N -0.48 -7.26 3.02 -122.80 -0.37 -7.63 16 16 C 0.06 0.77 9.98 59.85 0.60 1.37 16 17 C 0.14 2.11 2.92 -67.82 -0.20 1.91 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.16 3.09 4.86 -4.04 -0.02 3.07 16 20 N -0.69 -17.26 3.20 -59.91 -0.19 -17.46 16 21 C -0.21 -6.05 9.72 -15.06 -0.15 -6.20 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 24 N -0.94 -28.28 13.06 55.49 0.72 -27.56 16 25 Si 0.90 23.05 29.55 -169.99 -5.02 18.02 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 C -0.12 -1.35 4.62 -26.83 -0.12 -1.47 16 30 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.80 6.38 -51.92 -0.33 0.47 16 37 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.24 7.52 -51.93 -0.39 0.85 16 42 H 0.09 1.25 6.55 -51.93 -0.34 0.91 16 43 H 0.02 0.41 8.13 -51.92 -0.42 -0.01 16 44 H 0.04 0.82 6.36 -51.93 -0.33 0.49 16 45 H 0.38 9.98 6.98 -40.82 -0.28 9.69 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -34.58 379.69 -8.82 -43.40 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.56 Total: 6.33 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.76 Total: 7.55 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.33 Total: -61.60 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.14 Total: -19.43 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.58 -8.82 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264000452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.469 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds