Wall clock time and date at job start Tue Mar 31 2020 17:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.45908 * 2 1 4 4 C 1.53039 * 109.45936 * 240.03073 * 2 1 3 5 5 C 1.53187 * 109.31389 * 178.61443 * 4 2 1 6 6 N 1.46928 * 108.77684 * 54.63468 * 5 4 2 7 7 C 1.34778 * 120.63071 * 126.37086 * 6 5 4 8 8 O 1.21538 * 120.00141 * 185.71635 * 7 6 5 9 9 C 1.47890 * 119.99781 * 5.70929 * 7 6 5 10 10 C 1.36295 * 119.75489 * 85.74250 * 9 7 6 11 11 C 1.40404 * 119.90085 * 179.97438 * 10 9 7 12 12 C 1.36113 * 119.42163 * 359.97438 * 11 10 9 13 13 C 1.41235 * 119.50757 * 359.97438 * 12 11 10 14 14 O 1.21964 * 119.95740 * 179.97438 * 13 12 11 15 15 N 1.34677 * 120.08624 * 0.02610 * 13 12 11 16 16 C 1.46497 * 119.69817 * 179.97438 * 15 13 12 17 17 C 1.46919 * 118.73799 * 306.64487 * 6 5 4 18 18 H 1.08998 * 109.58626 * 293.56846 * 17 6 5 19 19 C 1.53000 * 109.58428 * 173.14069 * 17 6 5 20 20 N 1.46497 * 109.47184 * 68.85965 * 19 17 6 21 21 C 1.36931 * 120.00411 * 174.32368 * 20 19 17 22 22 H 1.08008 * 120.00087 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00444 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99596 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00008 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47233 * 90.00808 * 25 23 21 27 27 H 1.48506 * 109.46995 * 210.00447 * 25 23 21 28 28 H 1.48500 * 109.47600 * 330.00129 * 25 23 21 29 29 C 1.52764 * 109.01022 * 53.30738 * 17 6 5 30 30 H 1.09009 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47074 * 299.96463 * 1 2 3 32 32 H 1.08994 * 109.47404 * 59.97258 * 1 2 3 33 33 H 1.09001 * 109.49989 * 58.66174 * 4 2 1 34 34 H 1.09005 * 109.52850 * 298.58329 * 4 2 1 35 35 H 1.09004 * 109.58706 * 294.84821 * 5 4 2 36 36 H 1.09009 * 109.70550 * 174.49341 * 5 4 2 37 37 H 1.08001 * 120.04717 * 359.97144 * 10 9 7 38 38 H 1.08002 * 120.28999 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.24389 * 179.72009 * 12 11 10 40 40 H 1.08999 * 109.47191 * 274.03115 * 16 15 13 41 41 H 1.08999 * 109.47349 * 34.03645 * 16 15 13 42 42 H 1.09005 * 109.47036 * 154.02918 * 16 15 13 43 43 H 1.09009 * 109.46768 * 188.85723 * 19 17 6 44 44 H 1.08990 * 109.47378 * 308.85462 * 19 17 6 45 45 H 0.97004 * 120.00176 * 354.32733 * 20 19 17 46 46 H 0.97005 * 119.99604 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.57061 * 185.55003 * 29 17 6 48 48 H 1.08999 * 109.38560 * 65.51057 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0001 8 8 5.2860 -2.7821 1.0474 9 6 5.5468 -2.7271 -1.2744 10 6 6.6464 -2.1034 -1.7839 11 6 7.2049 -2.5468 -2.9934 12 6 6.6391 -3.5993 -3.6451 13 6 5.5007 -4.2281 -3.0942 14 8 4.9869 -5.1716 -3.6715 15 7 4.9813 -3.7864 -1.9328 16 6 3.7999 -4.4445 -1.3693 17 6 3.5672 -0.6923 1.2642 18 1 3.9097 0.3369 1.3714 19 6 4.0831 -1.5323 2.4343 20 7 5.5297 -1.3449 2.5696 21 6 6.1974 -1.9077 3.6243 22 1 5.6576 -2.4902 4.3563 23 6 7.5682 -1.7306 3.7522 24 7 8.2261 -1.0213 2.8598 25 14 8.4791 -2.4991 5.1906 26 1 8.9408 -3.8594 4.8144 27 1 9.6517 -1.6576 5.5404 28 1 7.5692 -2.5910 6.3606 29 6 2.0399 -0.7207 1.2501 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2209 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9142 0.3409 -1.3674 36 1 3.9437 -1.2832 -2.0986 37 1 7.0873 -1.2694 -1.2582 38 1 8.0759 -2.0569 -3.4031 39 1 7.0552 -3.9485 -4.5786 40 1 2.8998 -4.0080 -1.8019 41 1 3.8335 -5.5097 -1.5983 42 1 3.7877 -4.3057 -0.2882 43 1 3.5884 -1.2176 3.3533 44 1 3.8688 -2.5846 2.2485 45 1 6.0146 -0.8221 1.9120 46 1 9.1840 -0.8972 2.9494 47 1 1.6572 -0.2207 2.1398 48 1 1.6973 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264000452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:20 Heat of formation + Delta-G solvation = -3.900243 kcal Electronic energy + Delta-G solvation = -30916.508861 eV Core-core repulsion = 26973.030573 eV Total energy + Delta-G solvation = -3943.478288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.70890 -41.29746 -38.79158 -37.91913 -36.33402 -35.61999 -34.87398 -33.81356 -31.60498 -31.22495 -29.23576 -28.72707 -27.15508 -25.98103 -24.50957 -24.24684 -23.70135 -22.95968 -21.24432 -20.60647 -19.25747 -18.45924 -18.39839 -17.94201 -17.42510 -16.77423 -16.69914 -16.59563 -15.92388 -15.62558 -15.50092 -15.44663 -15.13038 -14.94235 -14.61094 -14.56103 -14.30831 -14.03147 -13.88884 -13.64349 -13.42723 -13.18064 -13.02011 -12.87347 -12.82828 -12.78791 -12.65854 -12.58171 -12.13517 -12.08694 -11.87208 -11.70188 -11.35778 -11.32878 -11.20360 -11.11032 -10.88863 -10.18468 -9.62167 -9.10829 -8.64449 -7.84560 -5.02758 -0.35708 0.70457 1.12507 1.44598 1.47315 1.53965 1.72742 2.03046 2.51981 2.61428 3.17313 3.49946 3.53636 3.72490 3.77877 3.87259 3.95750 4.03491 4.11122 4.18915 4.21315 4.28303 4.30592 4.38884 4.46185 4.48643 4.53390 4.62741 4.79986 4.82611 4.88816 4.92125 4.94958 5.02783 5.03905 5.11373 5.11933 5.21545 5.22683 5.33117 5.38975 5.43866 5.54443 5.57254 5.71598 5.89885 6.35858 6.37406 6.83276 7.17563 7.44736 8.22025 8.44995 9.39644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.005528 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.568905 B = 5064.125157 C = 7376.130610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.079 0.921 4 C -0.122 4.122 5 C 0.106 3.894 6 N -0.593 5.593 7 C 0.521 3.479 8 O -0.477 6.477 9 C 0.128 3.872 10 C -0.189 4.189 11 C 0.003 3.997 12 C -0.243 4.243 13 C 0.503 3.497 14 O -0.594 6.594 15 N -0.482 5.482 16 C 0.060 3.940 17 C 0.150 3.850 18 H 0.072 0.928 19 C 0.159 3.841 20 N -0.703 5.703 21 C -0.213 4.213 22 H 0.061 0.939 23 C -0.077 4.077 24 N -0.967 5.967 25 Si 0.960 3.040 26 H -0.299 1.299 27 H -0.294 1.294 28 H -0.273 1.273 29 C -0.113 4.113 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.180 0.820 39 H 0.170 0.830 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.020 0.980 44 H 0.023 0.977 45 H 0.369 0.631 46 H 0.246 0.754 47 H 0.085 0.915 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 4.669 -14.127 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.160 4.160 5 C -0.016 4.016 6 N -0.330 5.330 7 C 0.304 3.696 8 O -0.347 6.347 9 C 0.017 3.983 10 C -0.212 4.212 11 C -0.018 4.018 12 C -0.264 4.264 13 C 0.307 3.693 14 O -0.481 6.481 15 N -0.195 5.195 16 C -0.081 4.081 17 C 0.047 3.953 18 H 0.090 0.910 19 C 0.033 3.967 20 N -0.344 5.344 21 C -0.346 4.346 22 H 0.079 0.921 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.791 3.209 26 H -0.227 1.227 27 H -0.220 1.220 28 H -0.198 1.198 29 C -0.152 4.152 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.165 0.835 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.201 0.799 46 H 0.054 0.946 47 H 0.103 0.897 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.308 3.661 -13.673 20.127 hybrid contribution 1.250 -0.529 0.882 1.619 sum -13.058 3.132 -12.792 18.546 Atomic orbital electron populations 1.21764 0.93619 1.01971 1.02444 1.21089 0.96638 0.99547 0.93194 0.90242 1.21969 0.93117 1.01564 0.99328 1.21921 0.95670 0.99960 0.84020 1.47897 1.42198 1.34797 1.08080 1.18219 0.80888 0.83269 0.87220 1.91302 1.58141 1.55194 1.30062 1.20546 0.96118 0.89217 0.92382 1.21030 0.96839 1.04251 0.99102 1.21717 0.97195 0.92202 0.90680 1.22433 0.98212 1.00838 1.04913 1.17767 0.86536 0.84984 0.80036 1.90884 1.64940 1.31138 1.61122 1.45502 1.26953 1.26572 1.20463 1.22208 0.86530 0.99951 0.99443 1.21382 0.95145 0.96772 0.82019 0.90961 1.20978 0.84461 0.96994 0.94273 1.42316 1.03160 1.60609 1.28298 1.19429 0.90890 1.23161 1.01095 0.92111 1.25270 0.97250 1.02918 1.01457 1.69769 1.07150 1.46906 1.38131 0.85320 0.78355 0.77211 0.80033 1.22722 1.22048 1.19804 1.21862 0.91674 1.01738 0.99900 0.92901 0.92313 0.91441 0.88273 0.91963 0.89724 0.90502 0.83469 0.80299 0.81222 0.88334 0.89286 0.90561 0.96202 0.95916 0.79880 0.94559 0.89671 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 2 C -0.09 -1.27 2.68 -10.77 -0.03 -1.30 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -1.73 5.36 30.67 0.16 -1.57 16 5 C 0.11 2.01 6.32 86.36 0.55 2.55 16 6 N -0.59 -16.35 2.98 -799.17 -2.38 -18.73 16 7 C 0.52 18.19 4.73 86.80 0.41 18.60 16 8 O -0.48 -22.04 10.61 -3.84 -0.04 -22.08 16 9 C 0.13 3.93 4.35 40.45 0.18 4.11 16 10 C -0.19 -5.19 9.70 22.34 0.22 -4.98 16 11 C 0.00 0.07 10.08 22.30 0.22 0.30 16 12 C -0.24 -5.89 10.00 22.51 0.23 -5.66 16 13 C 0.50 15.62 7.43 84.99 0.63 16.25 16 14 O -0.59 -21.90 16.71 -5.20 -0.09 -21.98 16 15 N -0.48 -14.33 3.02 -660.60 -1.99 -16.32 16 16 C 0.06 1.59 9.98 127.77 1.27 2.86 16 17 C 0.15 4.35 2.92 44.83 0.13 4.48 16 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 19 C 0.16 6.43 4.86 86.38 0.42 6.85 16 20 N -0.70 -36.07 3.20 -343.45 -1.10 -37.17 16 21 C -0.21 -12.37 9.72 84.03 0.82 -11.55 16 22 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 25 Si 0.96 48.46 29.55 68.60 2.03 50.49 16 26 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 27 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 28 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 29 C -0.11 -2.33 4.62 30.53 0.14 -2.19 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.47 6.38 -2.38 -0.02 1.46 16 37 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 38 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.09 2.43 7.52 -2.39 -0.02 2.41 16 42 H 0.08 2.22 6.55 -2.38 -0.02 2.20 16 43 H 0.02 0.81 8.13 -2.38 -0.02 0.79 16 44 H 0.02 1.02 6.36 -2.39 -0.02 1.00 16 45 H 0.37 20.08 6.98 -92.71 -0.65 19.43 16 46 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.99 379.69 3.50 -74.49 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.31 Total: 27.33 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.48 Total: 23.61 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.19 Total: -131.85 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.13 Total: -44.07 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -77.99 3.50 -74.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264000452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.586 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds