Wall clock time and date at job start Tue Mar 31 2020 17:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45960 * 2 1 4 4 C 1.53043 * 109.45899 * 240.03177 * 2 1 3 5 5 C 1.53188 * 109.31070 * 178.61542 * 4 2 1 6 6 N 1.46923 * 108.77701 * 54.63375 * 5 4 2 7 7 C 1.34777 * 120.62942 * 126.41450 * 6 5 4 8 8 O 1.21287 * 119.99970 * 185.40321 * 7 6 5 9 9 C 1.50700 * 120.00095 * 5.40543 * 7 6 5 10 10 O 1.42904 * 109.47030 * 179.97438 * 9 7 6 11 11 C 1.35914 * 116.99767 * 179.97438 * 10 9 7 12 12 C 1.39142 * 120.46927 * 180.02562 * 11 10 9 13 13 C 1.38535 * 118.37002 * 180.02562 * 12 11 10 14 14 C 1.38255 * 119.22474 * 359.97438 * 13 12 11 15 15 N 1.31851 * 120.88428 * 0.02562 * 14 13 12 16 16 C 1.31840 * 121.77904 * 359.70239 * 15 14 13 17 17 C 1.46920 * 118.73756 * 306.38935 * 6 5 4 18 18 H 1.09007 * 109.58743 * 293.67769 * 17 6 5 19 19 C 1.53000 * 109.58661 * 173.39988 * 17 6 5 20 20 N 1.46499 * 109.47443 * 179.97438 * 19 17 6 21 21 C 1.36937 * 120.00495 * 174.97984 * 20 19 17 22 22 H 1.08000 * 119.99522 * 359.72412 * 21 20 19 23 23 C 1.38805 * 119.99885 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99612 * 179.72675 * 23 21 20 25 25 Si 1.86797 * 120.00406 * 359.72358 * 23 21 20 26 26 H 1.48498 * 109.47081 * 89.99990 * 25 23 21 27 27 H 1.48495 * 109.47306 * 209.99983 * 25 23 21 28 28 H 1.48497 * 109.47164 * 330.00214 * 25 23 21 29 29 C 1.53070 * 109.45182 * 119.81818 * 2 1 3 30 30 H 1.09004 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47039 * 299.96982 * 1 2 3 32 32 H 1.08996 * 109.47341 * 59.97349 * 1 2 3 33 33 H 1.09000 * 109.50026 * 58.65920 * 4 2 1 34 34 H 1.09005 * 109.51838 * 298.57908 * 4 2 1 35 35 H 1.08997 * 109.58663 * 294.84178 * 5 4 2 36 36 H 1.09006 * 109.58035 * 174.41971 * 5 4 2 37 37 H 1.08995 * 109.47325 * 299.99781 * 9 7 6 38 38 H 1.09002 * 109.47133 * 60.00480 * 9 7 6 39 39 H 1.07998 * 120.81319 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.38512 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.55736 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.65426 * 180.29585 * 16 15 14 43 43 H 1.08998 * 109.47082 * 59.96247 * 19 17 6 44 44 H 1.08996 * 109.47055 * 299.96379 * 19 17 6 45 45 H 0.97010 * 119.99473 * 354.98374 * 20 19 17 46 46 H 0.96999 * 120.00102 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.39200 * 61.37258 * 29 2 1 48 48 H 1.08995 * 109.62328 * 301.25610 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9621 -2.2572 0.0001 8 8 5.2903 -2.7766 1.0458 9 6 5.5542 -2.7393 -1.2992 10 8 6.4684 -3.8064 -1.0391 11 6 7.0935 -4.3586 -2.1122 12 6 7.9976 -5.4025 -1.9419 13 6 8.6102 -5.9326 -3.0657 14 6 8.3054 -5.4119 -4.3096 15 7 7.4436 -4.4221 -4.4363 16 6 6.8353 -3.8933 -3.3930 17 6 3.5714 -0.6885 1.2642 18 1 3.9164 0.3403 1.3684 19 6 4.0912 -1.5248 2.4352 20 7 3.5953 -0.9637 3.6943 21 6 3.8466 -1.6069 4.8767 22 1 4.4067 -2.5304 4.8806 23 6 3.3763 -1.0754 6.0696 24 7 3.6133 -1.6966 7.2056 25 14 2.4070 0.5214 6.0628 26 1 0.9602 0.2216 5.9139 27 1 2.6339 1.2436 7.3403 28 1 2.8563 1.3683 4.9288 29 6 2.0398 -0.7177 1.2522 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2209 -2.1399 34 1 1.6978 -1.7557 -1.2387 35 1 3.9142 0.3408 -1.3675 36 1 3.9416 -1.2847 -2.0984 37 1 4.7570 -3.0944 -1.9522 38 1 6.0828 -1.9186 -1.7842 39 1 8.2170 -5.7893 -0.9578 40 1 9.3176 -6.7432 -2.9711 41 1 8.7801 -5.8208 -5.1892 42 1 6.1318 -3.0865 -3.5369 43 1 5.1811 -1.5115 2.4356 44 1 3.7405 -2.5517 2.3322 45 1 3.0888 -0.1363 3.6903 46 1 3.2843 -1.3255 8.0392 47 1 1.6958 -1.7519 1.2419 48 1 1.6594 -0.2161 2.1420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264561330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:03 Heat of formation + Delta-G solvation = -1.531376 kcal Electronic energy + Delta-G solvation = -28998.831706 eV Core-core repulsion = 25055.456140 eV Total energy + Delta-G solvation = -3943.375566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11544 -40.44387 -38.53496 -37.45093 -35.01469 -34.09029 -32.76793 -32.15186 -30.78901 -30.25841 -29.24723 -27.72761 -25.81045 -24.08393 -23.61709 -23.44965 -22.54777 -21.14262 -20.49804 -19.27784 -18.71128 -17.60865 -17.20965 -17.01833 -16.74961 -16.31080 -15.79136 -15.24697 -14.83207 -14.65858 -14.51509 -14.32512 -14.00396 -13.93249 -13.70241 -13.48824 -13.40571 -13.15421 -12.86483 -12.67161 -12.49722 -12.44227 -12.02529 -11.99805 -11.75889 -11.65042 -11.34149 -11.07669 -10.91489 -10.77605 -10.56193 -10.30334 -10.17619 -10.06116 -9.81896 -9.49225 -8.99109 -8.89035 -8.80675 -8.50815 -7.08295 -5.65966 -3.00219 0.75561 0.95289 2.24477 2.52596 3.20299 3.40927 3.42202 3.45589 3.49001 4.07646 4.16535 4.33228 4.43971 4.54622 4.60304 4.61179 4.66632 4.70304 4.71912 4.74578 4.97386 5.02238 5.08479 5.17455 5.18475 5.35076 5.46085 5.54129 5.56491 5.62357 5.64526 5.71434 5.74923 5.77416 5.82626 5.86154 6.01146 6.08439 6.13347 6.14298 6.41432 6.50589 6.84130 6.96896 7.13446 7.32365 7.58354 8.08004 8.21235 8.53504 9.32705 10.04427 10.24455 11.53118 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.003002 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.345512 B = 9324.568427 C =11254.825692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.604 5.604 7 C 0.508 3.492 8 O -0.485 6.485 9 C 0.039 3.961 10 O -0.280 6.280 11 C 0.084 3.916 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.056 3.944 15 N -0.451 5.451 16 C 0.012 3.988 17 C 0.139 3.861 18 H 0.072 0.928 19 C 0.167 3.833 20 N -0.760 5.760 21 C -0.230 4.230 22 H 0.091 0.909 23 C -0.001 4.001 24 N -0.938 5.938 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 C -0.123 4.123 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.355 0.645 46 H 0.258 0.742 47 H 0.070 0.930 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -0.825 -28.083 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.341 5.341 7 C 0.293 3.707 8 O -0.357 6.357 9 C -0.040 4.040 10 O -0.190 6.190 11 C 0.036 3.964 12 C -0.132 4.132 13 C -0.150 4.150 14 C -0.102 4.102 15 N -0.160 5.160 16 C -0.146 4.146 17 C 0.036 3.964 18 H 0.090 0.910 19 C 0.041 3.959 20 N -0.408 5.408 21 C -0.360 4.360 22 H 0.109 0.891 23 C -0.196 4.196 24 N -0.587 5.587 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.205 1.205 29 C -0.161 4.161 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.187 0.813 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.381 -1.013 -27.951 28.071 hybrid contribution -0.704 1.037 0.726 1.449 sum 1.676 0.024 -27.225 27.277 Atomic orbital electron populations 1.21810 0.94955 1.01951 1.01619 1.21170 0.95888 0.99540 0.94744 0.91102 1.21984 0.94461 1.01784 0.98515 1.21786 0.95038 0.99556 0.85368 1.47999 1.43161 1.35397 1.07505 1.19870 0.80192 0.80635 0.89966 1.90933 1.59140 1.54236 1.31345 1.22672 0.93288 0.90379 0.97669 1.86222 1.54934 1.48133 1.29723 1.20158 0.94144 0.94533 0.87589 1.21044 0.95955 0.95231 1.00928 1.22055 0.99802 1.00490 0.92619 1.22669 0.96239 0.94030 0.97282 1.67512 1.06452 1.09006 1.33044 1.22900 1.02164 1.02145 0.87383 1.21661 0.93779 0.97872 0.83059 0.90956 1.21282 0.97605 0.94736 0.82297 1.42937 1.66952 1.27653 1.03256 1.19069 1.28542 1.05496 0.82904 0.89145 1.24665 1.01161 0.98458 0.95273 1.69708 1.51417 1.40321 0.97237 0.86567 0.80467 0.84931 0.76716 1.21200 1.21830 1.20480 1.22040 0.94589 1.01835 0.97634 0.92625 0.92402 0.92896 0.90674 0.91262 0.90883 0.90217 0.89018 0.88944 0.83567 0.83915 0.82500 0.82611 0.93286 0.93681 0.81280 0.93231 0.91108 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.09 -0.96 2.68 -90.56 -0.24 -1.20 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.02 5.37 -26.61 -0.14 -1.16 16 5 C 0.11 0.82 6.33 -3.71 -0.02 0.80 16 6 N -0.60 -7.53 2.97 -165.22 -0.49 -8.02 16 7 C 0.51 7.25 7.68 -10.99 -0.08 7.16 16 8 O -0.48 -9.53 11.90 -14.36 -0.17 -9.70 16 9 C 0.04 0.38 3.64 36.01 0.13 0.52 16 10 O -0.28 -3.58 9.68 -39.38 -0.38 -3.96 16 11 C 0.08 0.91 6.71 -39.07 -0.26 0.64 16 12 C -0.11 -1.01 10.13 -39.14 -0.40 -1.41 16 13 C -0.13 -0.97 10.11 -39.47 -0.40 -1.37 16 14 C 0.06 0.45 11.18 -17.54 -0.20 0.26 16 15 N -0.45 -4.57 10.36 -13.13 -0.14 -4.71 16 16 C 0.01 0.11 10.22 -17.38 -0.18 -0.06 16 17 C 0.14 2.17 3.03 -67.60 -0.21 1.97 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.17 3.58 4.10 -4.04 -0.02 3.57 16 20 N -0.76 -18.98 5.09 -59.91 -0.30 -19.28 16 21 C -0.23 -6.88 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.96 8.06 -52.49 -0.42 2.54 16 23 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 24 N -0.94 -30.58 13.97 55.49 0.78 -29.81 16 25 Si 0.88 22.59 27.73 -169.99 -4.71 17.87 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -6.64 6.53 56.52 0.37 -6.27 16 29 C -0.12 -1.73 4.41 -26.60 -0.12 -1.85 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.40 5.96 -51.93 -0.31 0.09 16 37 H 0.09 0.65 6.99 -51.93 -0.36 0.29 16 38 H 0.09 0.66 7.67 -51.93 -0.40 0.27 16 39 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 1.08 6.32 -52.48 -0.33 0.75 16 43 H 0.05 1.17 6.44 -51.93 -0.33 0.84 16 44 H 0.05 1.07 7.04 -51.93 -0.37 0.70 16 45 H 0.35 8.39 4.64 -40.82 -0.19 8.20 16 46 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.08 1.27 7.18 -51.93 -0.37 0.90 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -37.55 379.26 -9.08 -46.63 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.33 Total: 5.60 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.04 Total: -0.33 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.16 Total: -61.82 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.55 Total: -13.66 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.55 -9.08 -46.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264561330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.097 kcal (2) G-P(sol) polarization free energy of solvation -37.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds