Wall clock time and date at job start Tue Mar 31 2020 17:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45960 * 2 1 4 4 C 1.53043 * 109.45899 * 240.03177 * 2 1 3 5 5 C 1.53188 * 109.31070 * 178.61542 * 4 2 1 6 6 N 1.46923 * 108.77701 * 54.63375 * 5 4 2 7 7 C 1.34777 * 120.62942 * 126.41450 * 6 5 4 8 8 O 1.21287 * 119.99970 * 185.40321 * 7 6 5 9 9 C 1.50700 * 120.00095 * 5.40543 * 7 6 5 10 10 O 1.42904 * 109.47030 * 179.97438 * 9 7 6 11 11 C 1.35914 * 116.99767 * 179.97438 * 10 9 7 12 12 C 1.39142 * 120.46927 * 180.02562 * 11 10 9 13 13 C 1.38535 * 118.37002 * 180.02562 * 12 11 10 14 14 C 1.38255 * 119.22474 * 359.97438 * 13 12 11 15 15 N 1.31851 * 120.88428 * 0.02562 * 14 13 12 16 16 C 1.31840 * 121.77904 * 359.70239 * 15 14 13 17 17 C 1.46920 * 118.73756 * 306.38935 * 6 5 4 18 18 H 1.09007 * 109.58743 * 293.67769 * 17 6 5 19 19 C 1.53000 * 109.58661 * 173.39988 * 17 6 5 20 20 N 1.46499 * 109.47443 * 179.97438 * 19 17 6 21 21 C 1.36937 * 120.00495 * 174.97984 * 20 19 17 22 22 H 1.08000 * 119.99522 * 359.72412 * 21 20 19 23 23 C 1.38805 * 119.99885 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99612 * 179.72675 * 23 21 20 25 25 Si 1.86797 * 120.00406 * 359.72358 * 23 21 20 26 26 H 1.48498 * 109.47081 * 89.99990 * 25 23 21 27 27 H 1.48495 * 109.47306 * 209.99983 * 25 23 21 28 28 H 1.48497 * 109.47164 * 330.00214 * 25 23 21 29 29 C 1.53070 * 109.45182 * 119.81818 * 2 1 3 30 30 H 1.09004 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47039 * 299.96982 * 1 2 3 32 32 H 1.08996 * 109.47341 * 59.97349 * 1 2 3 33 33 H 1.09000 * 109.50026 * 58.65920 * 4 2 1 34 34 H 1.09005 * 109.51838 * 298.57908 * 4 2 1 35 35 H 1.08997 * 109.58663 * 294.84178 * 5 4 2 36 36 H 1.09006 * 109.58035 * 174.41971 * 5 4 2 37 37 H 1.08995 * 109.47325 * 299.99781 * 9 7 6 38 38 H 1.09002 * 109.47133 * 60.00480 * 9 7 6 39 39 H 1.07998 * 120.81319 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.38512 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.55736 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.65426 * 180.29585 * 16 15 14 43 43 H 1.08998 * 109.47082 * 59.96247 * 19 17 6 44 44 H 1.08996 * 109.47055 * 299.96379 * 19 17 6 45 45 H 0.97010 * 119.99473 * 354.98374 * 20 19 17 46 46 H 0.96999 * 120.00102 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.39200 * 61.37258 * 29 2 1 48 48 H 1.08995 * 109.62328 * 301.25610 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9621 -2.2572 0.0001 8 8 5.2903 -2.7766 1.0458 9 6 5.5542 -2.7393 -1.2992 10 8 6.4684 -3.8064 -1.0391 11 6 7.0935 -4.3586 -2.1122 12 6 7.9976 -5.4025 -1.9419 13 6 8.6102 -5.9326 -3.0657 14 6 8.3054 -5.4119 -4.3096 15 7 7.4436 -4.4221 -4.4363 16 6 6.8353 -3.8933 -3.3930 17 6 3.5714 -0.6885 1.2642 18 1 3.9164 0.3403 1.3684 19 6 4.0912 -1.5248 2.4352 20 7 3.5953 -0.9637 3.6943 21 6 3.8466 -1.6069 4.8767 22 1 4.4067 -2.5304 4.8806 23 6 3.3763 -1.0754 6.0696 24 7 3.6133 -1.6966 7.2056 25 14 2.4070 0.5214 6.0628 26 1 0.9602 0.2216 5.9139 27 1 2.6339 1.2436 7.3403 28 1 2.8563 1.3683 4.9288 29 6 2.0398 -0.7177 1.2522 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6572 -0.2209 -2.1399 34 1 1.6978 -1.7557 -1.2387 35 1 3.9142 0.3408 -1.3675 36 1 3.9416 -1.2847 -2.0984 37 1 4.7570 -3.0944 -1.9522 38 1 6.0828 -1.9186 -1.7842 39 1 8.2170 -5.7893 -0.9578 40 1 9.3176 -6.7432 -2.9711 41 1 8.7801 -5.8208 -5.1892 42 1 6.1318 -3.0865 -3.5369 43 1 5.1811 -1.5115 2.4356 44 1 3.7405 -2.5517 2.3322 45 1 3.0888 -0.1363 3.6903 46 1 3.2843 -1.3255 8.0392 47 1 1.6958 -1.7519 1.2419 48 1 1.6594 -0.2161 2.1420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264561330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:02 Heat of formation + Delta-G solvation = -28.249463 kcal Electronic energy + Delta-G solvation = -28999.990289 eV Core-core repulsion = 25055.456140 eV Total energy + Delta-G solvation = -3944.534150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99865 -41.34465 -39.36479 -38.45420 -36.86237 -35.05529 -34.09617 -33.38941 -32.06670 -31.39819 -30.06279 -28.62642 -27.45765 -24.95186 -24.60019 -24.28501 -23.84635 -22.63170 -21.47368 -20.34452 -19.71120 -19.37547 -18.15480 -17.74202 -17.59026 -17.25838 -16.98040 -16.37952 -16.26207 -15.71117 -15.54580 -15.38668 -15.06075 -14.93446 -14.76827 -14.67108 -14.52738 -14.16383 -14.10791 -13.86105 -13.79307 -13.50595 -13.10234 -12.96511 -12.90025 -12.77101 -12.56123 -12.48150 -12.21518 -12.08550 -11.94373 -11.82888 -11.40583 -11.26981 -11.03486 -10.71371 -10.53216 -10.26573 -9.71475 -9.50706 -9.26608 -8.05448 -5.40158 0.12525 0.25540 1.32076 1.36587 1.39266 1.46577 1.47104 2.35750 2.45720 2.80724 3.24434 3.26726 3.51863 3.62475 3.70902 3.71057 3.79396 3.88370 3.92892 3.99354 4.03059 4.06453 4.10382 4.21334 4.26755 4.43981 4.51903 4.61345 4.63523 4.67125 4.76566 4.87815 4.91652 4.97926 5.06302 5.10359 5.14400 5.15262 5.20793 5.27487 5.39110 5.52370 5.54215 5.59151 5.71871 6.10177 6.17702 6.35183 6.93665 7.01264 7.12338 7.77644 8.02232 9.17155 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.003002 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.345512 B = 9324.568427 C =11254.825692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.097 3.903 6 N -0.598 5.598 7 C 0.498 3.502 8 O -0.558 6.558 9 C 0.045 3.955 10 O -0.316 6.316 11 C 0.063 3.937 12 C -0.127 4.127 13 C -0.122 4.122 14 C 0.053 3.947 15 N -0.472 5.472 16 C 0.012 3.988 17 C 0.148 3.852 18 H 0.085 0.915 19 C 0.177 3.823 20 N -0.756 5.756 21 C -0.235 4.235 22 H 0.039 0.961 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.964 3.036 26 H -0.272 1.272 27 H -0.291 1.291 28 H -0.247 1.247 29 C -0.119 4.119 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.173 0.827 41 H 0.186 0.814 42 H 0.183 0.817 43 H 0.021 0.979 44 H 0.012 0.988 45 H 0.365 0.635 46 H 0.260 0.740 47 H 0.048 0.952 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 1.776 -32.625 32.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.024 4.024 6 N -0.333 5.333 7 C 0.286 3.714 8 O -0.435 6.435 9 C -0.033 4.033 10 O -0.228 6.228 11 C 0.015 3.985 12 C -0.153 4.153 13 C -0.142 4.142 14 C -0.104 4.104 15 N -0.181 5.181 16 C -0.145 4.145 17 C 0.044 3.956 18 H 0.102 0.898 19 C 0.052 3.948 20 N -0.405 5.405 21 C -0.366 4.366 22 H 0.057 0.943 23 C -0.259 4.259 24 N -0.638 5.638 25 Si 0.790 3.210 26 H -0.197 1.197 27 H -0.218 1.218 28 H -0.172 1.172 29 C -0.157 4.157 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.190 0.810 41 H 0.203 0.797 42 H 0.200 0.800 43 H 0.039 0.961 44 H 0.030 0.970 45 H 0.199 0.801 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.272 1.613 -32.595 32.660 hybrid contribution -0.271 0.067 2.122 2.140 sum 1.001 1.680 -30.473 30.536 Atomic orbital electron populations 1.21800 0.94338 1.01707 1.02353 1.21166 0.96359 0.99860 0.93411 0.89670 1.22003 0.94323 1.01432 0.98566 1.22275 0.95097 1.01375 0.83624 1.48104 1.42359 1.34721 1.08111 1.20789 0.79704 0.80039 0.90882 1.90913 1.61570 1.56736 1.34273 1.22783 0.94291 0.91157 0.95028 1.86173 1.55946 1.49280 1.31412 1.20357 0.94974 0.95373 0.87752 1.21312 0.96604 0.95717 1.01679 1.22368 0.99487 1.00661 0.91663 1.23224 0.95475 0.93280 0.98457 1.67585 1.07327 1.09940 1.33272 1.23238 1.02295 1.02491 0.86491 1.21332 0.94865 0.96934 0.82458 0.89751 1.21094 0.95871 0.94277 0.83575 1.42831 1.66955 1.27745 1.02929 1.18921 1.28046 1.04323 0.85354 0.94308 1.25644 1.02630 1.03270 0.94319 1.69925 1.52942 1.42781 0.98170 0.85284 0.78807 0.79304 0.77650 1.19734 1.21779 1.17153 1.21983 0.93130 1.01029 0.99592 0.93410 0.93481 0.90349 0.86996 0.92139 0.88503 0.86516 0.85470 0.85334 0.84135 0.80972 0.79660 0.80015 0.96146 0.96971 0.80068 0.93174 0.93301 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.09 -1.52 2.68 -10.76 -0.03 -1.55 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 4 C -0.13 -1.41 5.37 30.67 0.16 -1.25 16 5 C 0.10 1.06 6.33 86.36 0.55 1.61 16 6 N -0.60 -14.11 2.97 -795.03 -2.36 -16.48 16 7 C 0.50 14.36 7.68 87.66 0.67 15.03 16 8 O -0.56 -23.88 11.90 15.99 0.19 -23.69 16 9 C 0.04 0.81 3.64 71.24 0.26 1.07 16 10 O -0.32 -8.21 9.68 -73.54 -0.71 -8.92 16 11 C 0.06 1.33 6.71 22.60 0.15 1.48 16 12 C -0.13 -2.44 10.13 22.56 0.23 -2.21 16 13 C -0.12 -1.64 10.11 22.34 0.23 -1.41 16 14 C 0.05 0.74 11.18 84.69 0.95 1.68 16 15 N -0.47 -8.44 10.36 -195.44 -2.02 -10.46 16 16 C 0.01 0.21 10.22 84.80 0.87 1.07 16 17 C 0.15 4.61 3.03 44.98 0.14 4.75 16 18 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 19 C 0.18 8.17 4.10 86.38 0.35 8.52 16 20 N -0.76 -39.37 5.09 -343.46 -1.75 -41.11 16 21 C -0.24 -14.97 10.47 84.03 0.88 -14.09 16 22 H 0.04 2.80 8.06 -2.91 -0.02 2.77 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 24 N -0.99 -67.21 13.97 21.65 0.30 -66.90 16 25 Si 0.96 47.16 27.73 68.60 1.90 49.06 16 26 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.25 -10.73 6.53 99.48 0.65 -10.08 16 29 C -0.12 -3.29 4.41 30.68 0.14 -3.16 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.12 0.48 5.96 -2.38 -0.01 0.46 16 37 H 0.13 1.35 6.99 -2.39 -0.02 1.33 16 38 H 0.13 1.37 7.67 -2.39 -0.02 1.35 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.18 1.81 6.32 -2.91 -0.02 1.80 16 43 H 0.02 1.07 6.44 -2.39 -0.02 1.06 16 44 H 0.01 0.64 7.04 -2.39 -0.02 0.62 16 45 H 0.37 17.27 4.64 -92.70 -0.43 16.84 16 46 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 47 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.06 1.92 7.18 -2.39 -0.02 1.90 16 Total: -1.00 -91.86 379.26 2.69 -89.17 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.48 Total: 23.24 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.67 Total: 6.10 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -5.83 Total: -134.96 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.52 Total: -32.61 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.90 Total: 49.06 kcal Total: -91.86 2.69 -89.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264561330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -91.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds