Wall clock time and date at job start Tue Mar 31 2020 17:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.88403 * 2 1 4 4 C 1.55132 * 111.22855 * 236.08719 * 2 1 3 5 5 N 1.47419 * 104.72226 * 279.17885 * 4 2 1 6 6 C 1.34782 * 125.65230 * 155.81450 * 5 4 2 7 7 O 1.21273 * 120.00418 * 179.69105 * 6 5 4 8 8 C 1.50699 * 119.99427 * 359.68886 * 6 5 4 9 9 C 1.53004 * 109.47018 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47152 * 180.02562 * 9 8 6 11 11 C 1.35758 * 119.62598 * 269.97976 * 10 9 8 12 12 C 1.35346 * 120.70142 * 179.97438 * 11 10 9 13 13 C 1.40195 * 119.95046 * 0.02562 * 12 11 10 14 14 C 1.36400 * 119.26349 * 0.02562 * 13 12 11 15 15 C 1.34659 * 119.62352 * 90.00056 * 10 9 8 16 16 O 1.22063 * 119.98846 * 0.02562 * 15 10 9 17 17 C 1.47030 * 108.70281 * 335.55094 * 5 4 2 18 18 C 1.54316 * 107.26797 * 1.28824 * 17 5 4 19 19 H 1.09001 * 110.71946 * 263.83047 * 18 17 5 20 20 C 1.53004 * 110.71828 * 140.55813 * 18 17 5 21 21 N 1.46506 * 109.47203 * 66.45286 * 20 18 17 22 22 C 1.36927 * 120.00037 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00058 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00164 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99885 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00141 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46965 * 60.00192 * 26 24 22 28 28 H 1.48494 * 109.47047 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47148 * 299.99930 * 26 24 22 30 30 H 1.08997 * 109.47527 * 296.11741 * 1 2 3 31 31 H 1.09004 * 109.47303 * 56.12070 * 1 2 3 32 32 H 1.09001 * 109.46976 * 176.11876 * 1 2 3 33 33 H 1.08997 * 110.49760 * 160.33428 * 4 2 1 34 34 H 1.09001 * 110.34170 * 37.93816 * 4 2 1 35 35 H 1.09004 * 109.47363 * 60.00371 * 8 6 5 36 36 H 1.09001 * 109.47595 * 300.00038 * 8 6 5 37 37 H 1.08995 * 109.46875 * 60.00082 * 9 8 6 38 38 H 1.09001 * 109.47106 * 300.00506 * 9 8 6 39 39 H 1.08001 * 119.64845 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.02183 * 180.29873 * 12 11 10 41 41 H 1.08000 * 120.36694 * 179.97438 * 13 12 11 42 42 H 1.07999 * 120.34435 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.88229 * 120.71029 * 17 5 4 44 44 H 1.09004 * 109.87814 * 241.86976 * 17 5 4 45 45 H 1.09007 * 109.46834 * 186.45034 * 20 18 17 46 46 H 1.08994 * 109.47180 * 306.44852 * 20 18 17 47 47 H 0.97002 * 119.99337 * 359.97438 * 21 20 18 48 48 H 0.96994 * 120.00240 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0917 -0.8068 -1.2001 5 7 2.0153 -2.2157 -0.7729 6 6 1.9494 -3.2829 -1.5935 7 8 1.8953 -4.4021 -1.1296 8 6 1.9428 -3.0853 -3.0874 9 6 1.8634 -4.4465 -3.7816 10 7 1.8576 -4.2544 -5.2339 11 6 0.6765 -4.1046 -5.8864 12 6 0.6459 -3.9254 -7.2276 13 6 1.8427 -3.8936 -7.9570 14 6 3.0283 -4.0453 -7.2999 15 6 3.0239 -4.2289 -5.9066 16 8 4.0777 -4.3658 -5.3061 17 6 2.0294 -2.2643 0.6965 18 6 2.0861 -0.8075 1.2025 19 1 3.1130 -0.5150 1.4215 20 6 1.1959 -0.6271 2.4338 21 7 1.7448 -1.4002 3.5507 22 6 1.1127 -1.3915 4.7653 23 1 0.2098 -0.8144 4.9001 24 6 1.6325 -2.1243 5.8235 25 7 2.7332 -2.8272 5.6594 26 14 0.7706 -2.1119 7.4808 27 1 -0.6097 -2.6368 7.3247 28 1 1.5202 -2.9680 8.4349 29 1 0.7159 -0.7217 7.9998 30 1 -0.3634 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1261 -0.5259 -1.3981 34 1 1.4775 -0.6452 -2.0860 35 1 2.8577 -2.5761 -3.3907 36 1 1.0803 -2.4818 -3.3704 37 1 0.9488 -4.9560 -3.4785 38 1 2.7261 -5.0496 -3.4986 39 1 -0.2483 -4.1280 -5.3292 40 1 -0.2997 -3.8026 -7.7349 41 1 1.8260 -3.7513 -9.0275 42 1 3.9607 -4.0232 -7.8444 43 1 1.1229 -2.7481 1.0601 44 1 2.9074 -2.8108 1.0409 45 1 1.1604 0.4281 2.7049 46 1 0.1890 -0.9786 2.2087 47 1 2.5560 -1.9181 3.4297 48 1 3.0962 -3.3395 6.3986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279103634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:07 Heat of formation + Delta-G solvation = -48.713349 kcal Electronic energy + Delta-G solvation = -28322.368330 eV Core-core repulsion = 24376.946799 eV Total energy + Delta-G solvation = -3945.421530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37833 -41.33797 -39.34005 -37.97022 -36.47170 -36.04171 -34.28399 -32.81783 -32.30809 -30.77539 -30.41724 -27.89228 -27.33046 -26.04854 -24.87253 -24.49411 -23.26406 -22.78373 -20.50526 -20.33438 -19.14515 -18.76167 -18.29084 -17.86796 -17.45829 -17.17053 -16.89582 -16.75305 -16.29341 -15.99391 -15.46716 -15.39148 -15.24622 -15.08172 -14.83309 -14.44333 -14.27668 -13.85914 -13.82587 -13.73350 -13.27648 -13.22870 -13.08609 -12.96419 -12.84247 -12.79679 -12.71122 -12.61899 -12.31744 -12.23549 -11.90698 -11.67474 -11.53479 -11.45151 -11.22945 -11.01435 -10.96221 -10.90232 -9.74801 -9.00928 -8.95761 -7.95854 -5.25187 -0.05063 0.94838 1.45278 1.45988 1.49045 1.49876 1.55152 2.00826 2.54900 2.70912 3.30653 3.38302 3.47091 3.59290 3.63052 3.74150 3.80665 3.91006 4.00186 4.16220 4.18973 4.22797 4.26457 4.33707 4.36065 4.48971 4.51787 4.58207 4.65344 4.66915 4.74613 4.78707 4.85146 4.95923 5.02695 5.08275 5.10690 5.22560 5.23578 5.24207 5.31530 5.43769 5.48336 5.51950 5.69652 6.12453 6.25709 6.44914 6.98598 7.02409 7.31535 8.08346 8.29705 9.27629 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.002105 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.053466 B =13301.160926 C =13762.775271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.120 0.880 4 C 0.100 3.900 5 N -0.612 5.612 6 C 0.524 3.476 7 O -0.590 6.590 8 C -0.130 4.130 9 C 0.108 3.892 10 N -0.492 5.492 11 C 0.128 3.872 12 C -0.225 4.225 13 C 0.008 3.992 14 C -0.282 4.282 15 C 0.491 3.509 16 O -0.616 6.616 17 C 0.126 3.874 18 C -0.095 4.095 19 H 0.081 0.919 20 C 0.165 3.835 21 N -0.749 5.749 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.200 0.800 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.027 0.973 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 6.131 -32.760 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.138 0.862 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.314 3.686 7 O -0.471 6.471 8 C -0.170 4.170 9 C -0.014 4.014 10 N -0.201 5.201 11 C 0.003 3.997 12 C -0.247 4.247 13 C -0.013 4.013 14 C -0.303 4.303 15 C 0.296 3.704 16 O -0.504 6.504 17 C 0.002 3.998 18 C -0.115 4.115 19 H 0.099 0.901 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.217 0.783 40 H 0.201 0.799 41 H 0.185 0.815 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.834 5.452 -32.044 33.684 hybrid contribution 0.674 -0.847 1.647 1.971 sum -8.160 4.605 -30.397 31.808 Atomic orbital electron populations 1.21768 0.93496 1.01467 1.03049 1.22424 0.96965 0.99770 0.91313 0.86231 1.22797 1.02587 0.77985 0.98753 1.48625 1.71694 1.07952 1.06253 1.20671 0.75489 0.82956 0.89523 1.90732 1.52374 1.25255 1.78763 1.21815 1.06908 0.99418 0.88901 1.21588 1.05745 0.97231 0.76852 1.45556 1.07719 1.57541 1.09234 1.22789 0.89306 0.92610 0.95041 1.21211 1.00742 1.10405 0.92387 1.21896 0.90971 0.86252 1.02210 1.22098 1.01690 1.14722 0.91832 1.17741 0.82788 0.79634 0.90214 1.90954 1.31627 1.56144 1.71629 1.21693 0.99974 0.98091 0.80018 1.22364 1.00490 0.93139 0.95480 0.90090 1.20867 0.95047 0.94498 0.85738 1.42648 1.30650 1.57321 1.08523 1.19614 1.06074 1.22916 0.88941 0.90314 1.25640 0.98891 1.00525 1.02208 1.69829 1.24001 1.36022 1.32440 0.85176 0.77547 0.77535 0.79307 1.20405 1.22437 1.19976 0.92439 0.89471 0.94308 0.89825 0.86838 0.88301 0.84248 0.86282 0.91207 0.78296 0.79875 0.81498 0.84013 0.93606 0.94691 0.94944 0.95544 0.79775 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.15 71.98 0.59 -1.97 16 2 C -0.09 -1.63 3.54 -9.33 -0.03 -1.66 16 3 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 4 C 0.10 1.69 6.17 86.93 0.54 2.22 16 5 N -0.61 -16.40 3.31 -811.36 -2.69 -19.09 16 6 C 0.52 14.77 7.85 87.66 0.69 15.46 16 7 O -0.59 -22.68 16.31 -3.01 -0.05 -22.73 16 8 C -0.13 -2.32 5.02 29.85 0.15 -2.17 16 9 C 0.11 2.12 4.62 86.38 0.40 2.52 16 10 N -0.49 -8.03 2.58 -650.98 -1.68 -9.71 16 11 C 0.13 0.86 10.28 83.42 0.86 1.72 16 12 C -0.23 -0.90 10.01 22.08 0.22 -0.68 16 13 C 0.01 0.06 10.10 22.32 0.23 0.29 16 14 C -0.28 -4.64 9.99 22.40 0.22 -4.42 16 15 C 0.49 11.60 7.41 84.82 0.63 12.23 16 16 O -0.62 -21.28 16.64 -5.52 -0.09 -21.37 16 17 C 0.13 4.38 5.83 86.72 0.51 4.89 16 18 C -0.10 -2.89 2.87 -9.61 -0.03 -2.91 16 19 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 20 C 0.16 6.30 4.52 86.38 0.39 6.69 16 21 N -0.75 -38.59 5.45 -343.43 -1.87 -40.46 16 22 C -0.24 -13.79 9.99 84.04 0.84 -12.95 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 25 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 26 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 30 H 0.06 1.19 6.76 -2.39 -0.02 1.18 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.04 0.85 7.91 -2.39 -0.02 0.83 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.09 7.40 -2.39 -0.02 1.08 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.14 1.27 7.85 -2.39 -0.02 1.26 16 37 H 0.12 1.87 7.97 -2.39 -0.02 1.85 16 38 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 39 H 0.20 -0.20 8.04 -2.91 -0.02 -0.23 16 40 H 0.18 -0.57 8.06 -2.91 -0.02 -0.60 16 41 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.05 1.86 7.77 -2.39 -0.02 1.84 16 44 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.03 1.03 6.67 -2.39 -0.02 1.01 16 47 H 0.37 20.74 7.52 -92.71 -0.70 20.05 16 48 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -89.03 392.61 2.85 -86.19 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.26 Total: 24.46 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.66 Total: 14.96 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.96 Total: -130.62 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.14 Total: -44.10 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -89.03 2.85 -86.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279103634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.476 kcal (2) G-P(sol) polarization free energy of solvation -89.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds