Wall clock time and date at job start Tue Mar 31 2020 17:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 110.29358 * 2 1 4 4 C 1.54003 * 110.32818 * 122.13444 * 2 1 3 5 5 N 1.47486 * 107.08454 * 120.19617 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21575 * 120.00176 * 180.02562 * 6 5 4 8 8 C 1.47518 * 119.99779 * 0.02562 * 6 5 4 9 9 O 1.35190 * 127.15080 * 359.68380 * 8 6 5 10 10 N 1.21480 * 111.54809 * 179.83667 * 9 8 6 11 11 C 1.29066 * 111.68912 * 0.31197 * 10 9 8 12 12 C 1.35243 * 127.15629 * 179.97438 * 8 6 5 13 13 C 1.50110 * 131.33378 * 0.20483 * 12 8 6 14 14 C 1.53578 * 108.01740 * 163.74310 * 13 12 8 15 15 C 1.53002 * 109.80887 * 50.05055 * 14 13 12 16 16 C 1.50646 * 130.34084 * 180.11776 * 11 10 9 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.32959 * 237.75202 * 2 1 3 19 19 H 1.08999 * 110.74254 * 144.43584 * 18 2 1 20 20 C 1.53008 * 110.73441 * 21.29964 * 18 2 1 21 21 N 1.46501 * 109.46875 * 174.99909 * 20 18 2 22 22 C 1.36934 * 119.99733 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00008 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00074 * 180.02562 * 22 21 20 25 25 N 1.31610 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47712 * 59.99689 * 26 24 22 28 28 H 1.48499 * 109.47203 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47041 * 299.99319 * 26 24 22 30 30 H 1.09003 * 109.47024 * 299.32286 * 1 2 3 31 31 H 1.09001 * 109.47240 * 59.31426 * 1 2 3 32 32 H 1.09000 * 109.47520 * 179.31772 * 1 2 3 33 33 H 1.08999 * 109.91434 * 0.83694 * 4 2 1 34 34 H 1.09002 * 110.07717 * 239.64273 * 4 2 1 35 35 H 1.08996 * 109.75788 * 283.37244 * 13 12 8 36 36 H 1.08995 * 109.75384 * 44.11591 * 13 12 8 37 37 H 1.08997 * 109.41574 * 170.15123 * 14 13 12 38 38 H 1.08999 * 109.41202 * 289.94803 * 14 13 12 39 39 H 1.09002 * 109.38134 * 48.45647 * 15 14 13 40 40 H 1.08993 * 109.37917 * 168.23697 * 15 14 13 41 41 H 1.09000 * 109.73711 * 43.46637 * 16 11 10 42 42 H 1.08996 * 109.78424 * 282.77917 * 16 11 10 43 43 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 44 44 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 45 45 H 1.09001 * 109.46650 * 294.99733 * 20 18 2 46 46 H 1.09000 * 109.46877 * 54.99873 * 20 18 2 47 47 H 0.96993 * 120.00220 * 359.97438 * 21 20 18 48 48 H 0.97008 * 120.00396 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8803 -1.8850 0.7102 6 6 3.8950 -2.5067 1.3431 7 8 4.4841 -3.4192 0.7969 8 6 4.2908 -2.0799 2.6986 9 8 3.7438 -1.0859 3.4338 10 7 4.2879 -0.9792 4.5147 11 6 5.2395 -1.8395 4.6568 12 6 5.2796 -2.5980 3.4620 13 6 6.2523 -3.7115 3.2027 14 6 7.3903 -3.5964 4.2275 15 6 6.8081 -3.4643 5.6363 16 6 6.1736 -2.0782 5.8143 17 6 2.3603 -2.1796 -0.6450 18 6 2.0671 -0.7736 -1.2262 19 1 2.9787 -0.3117 -1.6051 20 6 1.0051 -0.8522 -2.3249 21 7 1.5799 -1.4837 -3.5154 22 6 0.8111 -1.6622 -4.6344 23 1 -0.2190 -1.3379 -4.6392 24 6 1.3556 -2.2611 -5.7622 25 7 2.6108 -2.6568 -5.7561 26 14 0.3067 -2.5052 -7.2885 27 1 -0.1706 -1.1867 -7.7774 28 1 1.1164 -3.1622 -8.3457 29 1 -0.8600 -3.3616 -6.9555 30 1 -0.3633 0.5033 0.8960 31 1 -0.3634 0.5244 -0.8838 32 1 -0.3634 -1.0276 -0.0122 33 1 1.2330 -1.1553 1.8112 34 1 2.6801 -0.1111 1.8377 35 1 5.7507 -4.6726 3.3157 36 1 6.6547 -3.6216 2.1938 37 1 8.0157 -4.4876 4.1761 38 1 7.9942 -2.7177 4.0012 39 1 6.0492 -4.2320 5.7875 40 1 7.6038 -3.5928 6.3700 41 1 5.6156 -2.0469 6.7501 42 1 6.9516 -1.3149 5.8239 43 1 3.1133 -2.6935 -1.2425 44 1 1.4458 -2.7698 -0.5862 45 1 0.1603 -1.4436 -1.9719 46 1 0.6658 0.1530 -2.5748 47 1 2.5052 -1.7747 -3.5111 48 1 2.9914 -3.0749 -6.5443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279123698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:16 Heat of formation + Delta-G solvation = 29.522298 kcal Electronic energy + Delta-G solvation = -29014.972395 eV Core-core repulsion = 25072.943417 eV Total energy + Delta-G solvation = -3942.028978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.18041 -40.14322 -38.35160 -37.83846 -34.72850 -33.30296 -32.82684 -32.62907 -31.17856 -30.28374 -28.95537 -26.79421 -25.71226 -25.15269 -23.75758 -23.47038 -22.42956 -21.76933 -20.33862 -19.59826 -19.06702 -17.98846 -17.75439 -16.82473 -16.33425 -15.98979 -15.80740 -15.30918 -14.95556 -14.65476 -14.56608 -14.32153 -14.00240 -13.68958 -13.50465 -13.39715 -13.03980 -12.87447 -12.78388 -12.46351 -12.32909 -12.20657 -12.09023 -11.82017 -11.62885 -11.36989 -11.32002 -10.98614 -10.88517 -10.82562 -10.53845 -10.42953 -10.27874 -10.26970 -10.18379 -9.98405 -9.69380 -9.66935 -8.86593 -8.73650 -6.91408 -5.74576 -3.03898 0.65725 1.81264 2.39433 2.90820 3.00480 3.45324 3.49633 3.50897 3.58166 4.07433 4.37980 4.43879 4.48835 4.59652 4.60317 4.64343 4.83200 4.85983 4.91857 5.03854 5.09280 5.15467 5.31453 5.37720 5.42957 5.45645 5.52364 5.56337 5.56809 5.60384 5.63262 5.74316 5.79918 5.83871 5.88798 5.94101 5.94445 6.04750 6.12144 6.14567 6.28016 6.37605 6.46685 6.71372 6.84031 7.35152 7.70496 7.73562 7.96741 8.43718 9.54816 10.12140 10.46237 11.48014 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.002503 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.455264 B =11184.357569 C =12369.965313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.100 3.900 5 N -0.608 5.608 6 C 0.618 3.382 7 O -0.508 6.508 8 C -0.070 4.070 9 O 0.100 5.900 10 N -0.338 5.338 11 C 0.017 3.983 12 C -0.123 4.123 13 C -0.050 4.050 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.040 4.040 17 C 0.117 3.883 18 C -0.104 4.104 19 H 0.084 0.916 20 C 0.165 3.835 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 2.203 25.424 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.404 3.596 7 O -0.384 6.384 8 C -0.134 4.134 9 O 0.032 5.968 10 N -0.042 5.042 11 C -0.144 4.144 12 C -0.128 4.128 13 C -0.087 4.087 14 C -0.159 4.159 15 C -0.157 4.157 16 C -0.078 4.078 17 C -0.004 4.004 18 C -0.123 4.123 19 H 0.103 0.897 20 C 0.037 3.963 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.217 0.783 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.672 2.606 25.811 26.555 hybrid contribution 0.037 -0.641 -1.148 1.316 sum 5.709 1.965 24.663 25.391 Atomic orbital electron populations 1.21909 0.93827 1.02517 1.02032 1.22031 0.96785 0.99394 0.93473 0.89728 1.22425 0.94838 0.88087 0.96934 1.48723 1.31857 1.34585 1.18832 1.16041 0.79773 0.82329 0.81493 1.90888 1.53680 1.29145 1.64719 1.23444 0.99124 0.94775 0.96107 1.85320 1.48350 1.43456 1.19715 1.73415 1.09627 1.20964 1.00149 1.23394 0.97804 0.94749 0.98444 1.21106 0.98157 1.00611 0.92904 1.20131 0.93219 0.94564 1.00817 1.21680 0.97422 1.02930 0.93888 1.21632 1.00645 0.95834 0.97609 1.20135 0.95713 0.98629 0.93320 1.22686 0.99835 0.97685 0.80155 1.22546 1.00592 0.94315 0.94891 0.89743 1.20720 0.93251 0.96232 0.86102 1.42400 1.13040 1.72111 1.10280 1.19153 0.94415 1.32817 0.90860 0.91229 1.24747 0.96286 1.01563 0.98315 1.69647 1.12484 1.46324 1.29569 0.86275 0.79233 0.77725 0.82975 1.21300 1.21718 1.21279 0.92879 0.91252 0.92083 0.90806 0.90259 0.89356 0.88744 0.90499 0.91392 0.91210 0.90418 0.89482 0.89281 0.88874 0.90104 0.95606 0.95732 0.78274 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.78 37.15 0.29 -1.28 16 2 C -0.10 -1.14 3.53 -89.25 -0.32 -1.46 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.10 1.15 6.01 -2.98 -0.02 1.13 16 5 N -0.61 -8.67 3.29 -171.00 -0.56 -9.24 16 6 C 0.62 9.45 7.89 -12.48 -0.10 9.35 16 7 O -0.51 -9.12 16.14 5.30 0.09 -9.04 16 8 C -0.07 -0.94 7.06 -36.87 -0.26 -1.20 16 9 O 0.10 1.27 8.73 13.82 0.12 1.40 16 10 N -0.34 -4.24 12.03 33.15 0.40 -3.84 16 11 C 0.02 0.18 7.21 -82.51 -0.60 -0.41 16 12 C -0.12 -1.46 6.02 -104.70 -0.63 -2.09 16 13 C -0.05 -0.49 5.59 -27.87 -0.16 -0.65 16 14 C -0.12 -0.84 5.87 -26.43 -0.16 -0.99 16 15 C -0.12 -0.70 5.84 -26.48 -0.15 -0.86 16 16 C -0.04 -0.29 6.32 -27.66 -0.17 -0.46 16 17 C 0.12 1.87 6.45 -2.13 -0.01 1.85 16 18 C -0.10 -1.60 3.01 -88.74 -0.27 -1.86 16 19 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 20 C 0.16 3.09 4.44 -4.04 -0.02 3.07 16 21 N -0.73 -18.12 5.52 -59.90 -0.33 -18.45 16 22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 26 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.80 6.76 -51.93 -0.35 0.45 16 32 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 33 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 34 H 0.08 0.86 6.25 -51.93 -0.32 0.53 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.05 7.77 -51.93 -0.40 0.64 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 39 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.71 7.85 -51.93 -0.41 1.31 16 44 H 0.08 1.28 7.94 -51.93 -0.41 0.86 16 45 H 0.03 0.48 6.80 -51.93 -0.35 0.13 16 46 H 0.02 0.47 7.37 -51.93 -0.38 0.09 16 47 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -32.31 379.24 -9.19 -41.50 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.51 Total: 5.28 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.81 Total: -3.14 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.23 Total: -59.07 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.21 Total: -7.64 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.31 -9.19 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279123698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.021 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds