Wall clock time and date at job start Tue Mar 31 2020 17:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 110.29358 * 2 1 4 4 C 1.54003 * 110.32818 * 122.13444 * 2 1 3 5 5 N 1.47486 * 107.08454 * 120.19617 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21575 * 120.00176 * 180.02562 * 6 5 4 8 8 C 1.47518 * 119.99779 * 0.02562 * 6 5 4 9 9 O 1.35190 * 127.15080 * 359.68380 * 8 6 5 10 10 N 1.21480 * 111.54809 * 179.83667 * 9 8 6 11 11 C 1.29066 * 111.68912 * 0.31197 * 10 9 8 12 12 C 1.35243 * 127.15629 * 179.97438 * 8 6 5 13 13 C 1.50110 * 131.33378 * 0.20483 * 12 8 6 14 14 C 1.53578 * 108.01740 * 163.74310 * 13 12 8 15 15 C 1.53002 * 109.80887 * 50.05055 * 14 13 12 16 16 C 1.50646 * 130.34084 * 180.11776 * 11 10 9 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.32959 * 237.75202 * 2 1 3 19 19 H 1.08999 * 110.74254 * 144.43584 * 18 2 1 20 20 C 1.53008 * 110.73441 * 21.29964 * 18 2 1 21 21 N 1.46501 * 109.46875 * 174.99909 * 20 18 2 22 22 C 1.36934 * 119.99733 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00008 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00074 * 180.02562 * 22 21 20 25 25 N 1.31610 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47712 * 59.99689 * 26 24 22 28 28 H 1.48499 * 109.47203 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47041 * 299.99319 * 26 24 22 30 30 H 1.09003 * 109.47024 * 299.32286 * 1 2 3 31 31 H 1.09001 * 109.47240 * 59.31426 * 1 2 3 32 32 H 1.09000 * 109.47520 * 179.31772 * 1 2 3 33 33 H 1.08999 * 109.91434 * 0.83694 * 4 2 1 34 34 H 1.09002 * 110.07717 * 239.64273 * 4 2 1 35 35 H 1.08996 * 109.75788 * 283.37244 * 13 12 8 36 36 H 1.08995 * 109.75384 * 44.11591 * 13 12 8 37 37 H 1.08997 * 109.41574 * 170.15123 * 14 13 12 38 38 H 1.08999 * 109.41202 * 289.94803 * 14 13 12 39 39 H 1.09002 * 109.38134 * 48.45647 * 15 14 13 40 40 H 1.08993 * 109.37917 * 168.23697 * 15 14 13 41 41 H 1.09000 * 109.73711 * 43.46637 * 16 11 10 42 42 H 1.08996 * 109.78424 * 282.77917 * 16 11 10 43 43 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 44 44 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 45 45 H 1.09001 * 109.46650 * 294.99733 * 20 18 2 46 46 H 1.09000 * 109.46877 * 54.99873 * 20 18 2 47 47 H 0.96993 * 120.00220 * 359.97438 * 21 20 18 48 48 H 0.97008 * 120.00396 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8803 -1.8850 0.7102 6 6 3.8950 -2.5067 1.3431 7 8 4.4841 -3.4192 0.7969 8 6 4.2908 -2.0799 2.6986 9 8 3.7438 -1.0859 3.4338 10 7 4.2879 -0.9792 4.5147 11 6 5.2395 -1.8395 4.6568 12 6 5.2796 -2.5980 3.4620 13 6 6.2523 -3.7115 3.2027 14 6 7.3903 -3.5964 4.2275 15 6 6.8081 -3.4643 5.6363 16 6 6.1736 -2.0782 5.8143 17 6 2.3603 -2.1796 -0.6450 18 6 2.0671 -0.7736 -1.2262 19 1 2.9787 -0.3117 -1.6051 20 6 1.0051 -0.8522 -2.3249 21 7 1.5799 -1.4837 -3.5154 22 6 0.8111 -1.6622 -4.6344 23 1 -0.2190 -1.3379 -4.6392 24 6 1.3556 -2.2611 -5.7622 25 7 2.6108 -2.6568 -5.7561 26 14 0.3067 -2.5052 -7.2885 27 1 -0.1706 -1.1867 -7.7774 28 1 1.1164 -3.1622 -8.3457 29 1 -0.8600 -3.3616 -6.9555 30 1 -0.3633 0.5033 0.8960 31 1 -0.3634 0.5244 -0.8838 32 1 -0.3634 -1.0276 -0.0122 33 1 1.2330 -1.1553 1.8112 34 1 2.6801 -0.1111 1.8377 35 1 5.7507 -4.6726 3.3157 36 1 6.6547 -3.6216 2.1938 37 1 8.0157 -4.4876 4.1761 38 1 7.9942 -2.7177 4.0012 39 1 6.0492 -4.2320 5.7875 40 1 7.6038 -3.5928 6.3700 41 1 5.6156 -2.0469 6.7501 42 1 6.9516 -1.3149 5.8239 43 1 3.1133 -2.6935 -1.2425 44 1 1.4458 -2.7698 -0.5862 45 1 0.1603 -1.4436 -1.9719 46 1 0.6658 0.1530 -2.5748 47 1 2.5052 -1.7747 -3.5111 48 1 2.9914 -3.0749 -6.5443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279123698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:16 Heat of formation + Delta-G solvation = 9.829478 kcal Electronic energy + Delta-G solvation = -29015.826340 eV Core-core repulsion = 25072.943417 eV Total energy + Delta-G solvation = -3942.882923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.09899 -41.34473 -39.46883 -38.66375 -36.46880 -34.55551 -33.89975 -33.42261 -32.86747 -31.17149 -30.34952 -27.94146 -27.01492 -26.09217 -25.20291 -24.28105 -23.84156 -22.98361 -21.08041 -20.54753 -20.36138 -19.19386 -18.92211 -18.45291 -17.42928 -17.23424 -16.84364 -16.50609 -16.18121 -15.91214 -15.44745 -15.26568 -15.23262 -14.99580 -14.83729 -14.44905 -14.30323 -13.86396 -13.74760 -13.51744 -13.47234 -13.43080 -13.11140 -12.93097 -12.88657 -12.71843 -12.68092 -12.21128 -11.93559 -11.90952 -11.84098 -11.68692 -11.57057 -11.54471 -11.43460 -11.34241 -11.00480 -10.87546 -10.67727 -9.92309 -8.96861 -7.92480 -5.21396 -0.37832 0.93507 1.29515 1.48266 1.51474 1.57461 1.75159 1.93800 2.57816 2.80560 3.16100 3.40461 3.46631 3.51778 3.66746 3.75740 3.83341 3.89299 3.92705 4.10945 4.22454 4.26265 4.32618 4.34991 4.38244 4.49008 4.49953 4.55381 4.65201 4.77987 4.79717 4.83570 4.86137 4.86922 4.95012 5.00846 5.07454 5.10939 5.13320 5.20606 5.24680 5.26412 5.37697 5.38593 5.52731 5.54020 6.19325 6.29190 6.61437 6.94486 7.35265 8.12105 8.33500 9.31053 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.002503 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.455264 B =11184.357569 C =12369.965313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.102 0.898 4 C 0.101 3.899 5 N -0.607 5.607 6 C 0.615 3.385 7 O -0.546 6.546 8 C -0.088 4.088 9 O 0.095 5.905 10 N -0.351 5.351 11 C 0.024 3.976 12 C -0.123 4.123 13 C -0.054 4.054 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.042 4.042 17 C 0.122 3.878 18 C -0.096 4.096 19 H 0.069 0.931 20 C 0.167 3.833 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.277 1.277 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.033 0.967 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 3.192 27.978 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.020 4.020 5 N -0.338 5.338 6 C 0.402 3.598 7 O -0.425 6.425 8 C -0.152 4.152 9 O 0.028 5.972 10 N -0.056 5.056 11 C -0.137 4.137 12 C -0.128 4.128 13 C -0.091 4.091 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.080 4.080 17 C 0.000 4.000 18 C -0.116 4.116 19 H 0.088 0.912 20 C 0.041 3.959 21 N -0.391 5.391 22 C -0.373 4.373 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.203 1.203 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.015 3.645 28.400 29.069 hybrid contribution 0.221 -0.923 -1.847 2.076 sum 5.236 2.723 26.553 27.201 Atomic orbital electron populations 1.21902 0.92573 1.02441 1.03165 1.22026 0.97692 0.99637 0.91150 0.87946 1.22610 0.95141 0.87308 0.96969 1.48754 1.31847 1.35100 1.18100 1.16288 0.79454 0.81892 0.82139 1.90858 1.54943 1.30844 1.65886 1.23139 1.00327 0.96085 0.95647 1.85295 1.48649 1.43373 1.19844 1.73394 1.10451 1.21743 1.00062 1.24006 0.97365 0.93329 0.99003 1.21507 0.97562 1.00657 0.93041 1.20233 0.93984 0.93919 1.01006 1.21694 0.96291 1.03885 0.93599 1.21651 1.01330 0.94894 0.97372 1.20407 0.95471 0.99845 0.92253 1.22469 0.98776 0.97826 0.80932 1.22373 0.99218 0.94555 0.95453 0.91214 1.20872 0.94164 0.95884 0.85029 1.42662 1.12460 1.72482 1.11530 1.19615 0.94948 1.31187 0.91593 0.90230 1.25592 0.97521 1.02404 1.01584 1.69824 1.14352 1.48059 1.30047 0.85211 0.77601 0.77884 0.79066 1.20226 1.22522 1.20322 0.90106 0.91842 0.92713 0.88992 0.89090 0.89338 0.90620 0.88795 0.91240 0.91433 0.87558 0.88033 0.87713 0.92318 0.89995 0.94701 0.94932 0.79772 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 7.78 71.98 0.56 -2.17 16 2 C -0.09 -1.86 3.53 -9.91 -0.03 -1.90 16 3 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.10 2.19 6.01 86.53 0.52 2.71 16 5 N -0.61 -17.61 3.29 -813.19 -2.68 -20.29 16 6 C 0.62 19.54 7.89 86.69 0.68 20.22 16 7 O -0.55 -20.88 16.14 -3.95 -0.06 -20.94 16 8 C -0.09 -2.37 7.06 24.03 0.17 -2.20 16 9 O 0.09 2.34 8.73 59.45 0.52 2.86 16 10 N -0.35 -8.32 12.03 -50.84 -0.61 -8.93 16 11 C 0.02 0.48 7.21 43.77 0.32 0.80 16 12 C -0.12 -2.87 6.02 -19.92 -0.12 -2.99 16 13 C -0.05 -1.06 5.59 29.86 0.17 -0.89 16 14 C -0.12 -1.38 5.87 30.79 0.18 -1.20 16 15 C -0.11 -1.00 5.84 30.76 0.18 -0.82 16 16 C -0.04 -0.48 6.32 29.99 0.19 -0.29 16 17 C 0.12 4.04 6.45 86.73 0.56 4.60 16 18 C -0.10 -2.98 3.01 -9.58 -0.03 -3.01 16 19 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 20 C 0.17 6.23 4.44 86.38 0.38 6.61 16 21 N -0.75 -37.74 5.52 -343.43 -1.90 -39.64 16 22 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 25 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 26 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.30 6.76 -2.39 -0.02 1.29 16 32 H 0.05 1.12 7.51 -2.39 -0.02 1.10 16 33 H 0.09 1.70 7.68 -2.39 -0.02 1.68 16 34 H 0.09 1.80 6.25 -2.39 -0.01 1.79 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.77 7.77 -2.39 -0.02 1.75 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.82 8.11 -2.39 -0.02 0.80 16 39 H 0.07 0.65 8.10 -2.39 -0.02 0.63 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 2.34 7.85 -2.39 -0.02 2.32 16 44 H 0.08 2.67 7.94 -2.39 -0.02 2.65 16 45 H 0.04 1.27 6.80 -2.39 -0.02 1.25 16 46 H 0.03 1.20 7.37 -2.39 -0.02 1.18 16 47 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 48 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -71.95 379.24 2.88 -69.07 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.26 Total: 27.07 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.03 Total: 2.77 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -4.90 Total: -129.32 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.46 Total: -18.08 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -71.95 2.88 -69.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279123698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.898 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds