Wall clock time and date at job start Tue Mar 31 2020 17:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35739 * 117.00364 * 2 1 4 4 C 1.39286 * 120.84375 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09406 * 180.02562 * 4 3 2 6 6 N 1.31982 * 120.82231 * 0.02562 * 5 4 3 7 7 C 1.31945 * 121.86020 * 359.97438 * 6 5 4 8 8 C 1.37989 * 120.82507 * 359.71953 * 7 6 5 9 9 C 1.50705 * 120.45842 * 180.30286 * 8 7 6 10 10 C 1.50703 * 109.47190 * 265.25628 * 9 8 7 11 11 O 1.21281 * 119.99921 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99857 * 179.97438 * 10 9 8 13 13 C 1.48117 * 127.03504 * 359.68527 * 12 10 9 14 14 C 1.54590 * 103.42100 * 219.28663 * 13 12 10 15 15 H 1.09007 * 110.98670 * 204.36885 * 14 13 12 16 16 C 1.53001 * 110.57915 * 81.17011 * 14 13 12 17 17 C 1.54612 * 102.91334 * 322.86082 * 14 13 12 18 18 H 1.08994 * 110.41783 * 262.76556 * 17 14 13 19 19 C 1.53005 * 110.32501 * 140.59074 * 17 14 13 20 20 N 1.46502 * 109.46959 * 177.92893 * 19 17 14 21 21 C 1.36933 * 119.99880 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00452 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00203 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99663 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00350 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46870 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46829 * 120.00042 * 25 23 21 28 28 H 1.48497 * 109.47279 * 240.00256 * 25 23 21 29 29 C 1.47485 * 127.03279 * 179.97438 * 12 10 9 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99827 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99948 * 1 2 3 33 33 H 1.08001 * 120.45280 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.59468 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.58421 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.46721 * 25.25232 * 9 8 7 37 37 H 1.08996 * 109.47355 * 145.25493 * 9 8 7 38 38 H 1.09003 * 110.65794 * 337.76513 * 13 12 10 39 39 H 1.08997 * 110.66377 * 100.88020 * 13 12 10 40 40 H 1.08995 * 109.46848 * 306.58596 * 16 14 13 41 41 H 1.08993 * 109.47115 * 66.58542 * 16 14 13 42 42 H 1.09006 * 109.46912 * 186.58788 * 16 14 13 43 43 H 1.08993 * 109.47046 * 297.92891 * 19 17 14 44 44 H 1.09001 * 109.46794 * 57.93475 * 19 17 14 45 45 H 0.96994 * 120.00148 * 0.02562 * 20 19 17 46 46 H 0.97002 * 120.00362 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.91379 * 273.87875 * 29 12 10 48 48 H 1.08999 * 109.91109 * 34.96724 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0005 5 6 1.9677 3.5980 -0.0011 6 7 3.2866 3.6457 -0.0016 7 6 4.0231 2.5509 -0.0011 8 6 3.4346 1.3028 0.0058 9 6 4.2838 0.0578 0.0131 10 6 4.4703 -0.4315 -1.4000 11 8 3.9632 0.1712 -2.3223 12 7 5.2006 -1.5387 -1.6389 13 6 5.8903 -2.3855 -0.6384 14 6 7.2214 -2.7513 -1.3344 15 1 7.6307 -3.6779 -0.9317 16 6 8.2315 -1.6104 -1.1968 17 6 6.8003 -2.9349 -2.8107 18 1 6.6391 -3.9900 -3.0317 19 6 7.8652 -2.3541 -3.7433 20 7 7.4714 -2.5818 -5.1359 21 6 8.2758 -2.1461 -6.1548 22 1 9.2002 -1.6342 -5.9319 23 6 7.9030 -2.3623 -7.4744 24 7 6.7761 -2.9857 -7.7461 25 14 8.9999 -1.7672 -8.8644 26 1 10.1997 -1.1008 -8.2974 27 1 9.4224 -2.9256 -9.6921 28 1 8.2499 -0.8029 -9.7086 29 6 5.4815 -2.1517 -2.9507 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2246 2.3566 -0.0014 34 1 1.4009 4.5174 -0.0019 35 1 5.1001 2.6327 -0.0019 36 1 5.2562 0.2839 0.4506 37 1 3.7907 -0.7149 0.6030 38 1 6.0775 -1.8242 0.2770 39 1 5.3091 -3.2833 -0.4282 40 1 7.7827 -0.6830 -1.5526 41 1 8.5137 -1.4993 -0.1500 42 1 9.1176 -1.8362 -1.7901 43 1 7.9609 -1.2834 -3.5632 44 1 8.8210 -2.8418 -3.5516 45 1 6.6410 -3.0413 -5.3362 46 1 6.5157 -3.1372 -8.6682 47 1 4.6736 -2.8304 -3.2239 48 1 5.5861 -1.3752 -3.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325533290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:44 Heat of formation + Delta-G solvation = -20.798172 kcal Electronic energy + Delta-G solvation = -28957.182413 eV Core-core repulsion = 25012.971375 eV Total energy + Delta-G solvation = -3944.211037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03329 -39.95720 -38.43256 -37.87513 -34.59979 -33.51565 -32.64387 -31.42496 -31.12705 -29.43153 -28.18601 -27.68095 -26.61153 -25.10749 -23.36360 -23.13566 -22.45186 -21.66512 -19.25510 -19.00684 -18.52555 -17.40567 -17.28341 -16.79532 -16.26303 -16.08306 -15.57107 -15.17771 -14.97392 -14.81692 -14.51693 -14.34263 -13.82731 -13.76058 -13.61408 -13.37489 -13.25163 -12.82357 -12.80890 -12.55641 -12.20837 -12.15203 -11.86533 -11.76603 -11.72385 -11.58171 -11.42762 -10.99750 -10.83447 -10.53744 -10.43000 -10.19363 -9.89911 -9.80684 -9.69126 -9.63595 -9.31884 -8.91220 -8.83669 -8.47634 -6.87873 -5.72402 -3.00973 0.87550 1.16646 2.79581 2.84640 3.08397 3.46772 3.52177 3.54532 3.65464 4.20732 4.39979 4.52542 4.54380 4.57218 4.64256 4.67291 4.78749 4.83323 4.94366 4.96405 5.04845 5.09792 5.17323 5.33413 5.37894 5.43141 5.49878 5.52487 5.60678 5.63704 5.70560 5.81597 5.82407 5.87681 6.06259 6.10686 6.19327 6.32374 6.35219 6.36979 6.47981 6.54435 6.75737 6.90959 6.91876 7.71251 7.74328 7.83333 8.34075 8.46302 9.57515 10.15096 10.49293 11.50564 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002742 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.184471 B =10210.031874 C =10841.897523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.149 4.149 9 C -0.083 4.083 10 C 0.533 3.467 11 O -0.531 6.531 12 N -0.618 5.618 13 C 0.102 3.898 14 C -0.099 4.099 15 H 0.087 0.913 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.084 0.916 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.113 3.887 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.061 0.939 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 4.586 24.628 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.023 4.023 6 N -0.219 5.219 7 C -0.009 4.009 8 C -0.152 4.152 9 C -0.124 4.124 10 C 0.321 3.679 11 O -0.407 6.407 12 N -0.353 5.353 13 C -0.021 4.021 14 C -0.119 4.119 15 H 0.106 0.894 16 C -0.201 4.201 17 C -0.123 4.123 18 H 0.103 0.897 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.009 4.009 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.954 5.667 24.044 26.633 hybrid contribution -0.489 -0.719 -1.018 1.339 sum -10.443 4.948 23.026 25.763 Atomic orbital electron populations 1.23140 0.77754 1.04423 1.01569 1.86067 1.21881 1.26261 1.87464 1.19093 0.91806 0.84693 0.91420 1.22165 1.01432 0.93178 1.11592 1.22536 0.90348 0.96908 0.92534 1.67735 1.07089 1.31866 1.15193 1.22522 1.00259 0.86109 0.92052 1.19741 0.90846 0.96439 1.08174 1.20362 1.00745 0.95807 0.95459 1.20012 0.78013 0.79048 0.90828 1.90750 1.48093 1.55868 1.46018 1.48808 1.51066 1.26077 1.09347 1.22563 0.92880 0.94577 0.92062 1.22193 0.94703 0.99543 0.95411 0.89444 1.21828 0.99158 0.98290 1.00856 1.22340 0.95220 1.00328 0.94432 0.89741 1.20791 0.93926 0.96995 0.84790 1.42408 1.25909 1.70111 0.99369 1.19246 1.01619 1.30091 0.85938 0.91199 1.24739 0.97608 1.01408 0.97253 1.69667 1.23043 1.47166 1.18251 0.86128 0.79644 0.77885 0.82618 1.20572 1.21912 1.21870 1.22134 0.96122 0.97519 0.85136 0.87847 0.92224 0.92431 0.84414 0.82586 0.82229 0.87836 0.87798 0.90367 0.90968 0.92379 0.93153 0.91450 0.95811 0.96086 0.78334 0.93596 0.92019 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.45 9.77 -18.92 -0.18 -3.63 16 3 C 0.18 2.20 6.70 -38.82 -0.26 1.94 16 4 C -0.26 -2.66 9.11 -39.30 -0.36 -3.02 16 5 C 0.13 1.40 11.17 -17.59 -0.20 1.21 16 6 N -0.51 -6.43 10.36 -13.33 -0.14 -6.57 16 7 C 0.15 1.77 10.84 -17.59 -0.19 1.58 16 8 C -0.15 -1.82 4.40 -104.34 -0.46 -2.28 16 9 C -0.08 -0.90 4.54 -29.03 -0.13 -1.03 16 10 C 0.53 8.18 7.88 -10.98 -0.09 8.09 16 11 O -0.53 -10.78 16.37 5.56 0.09 -10.69 16 12 N -0.62 -8.78 3.19 -169.97 -0.54 -9.33 16 13 C 0.10 1.03 6.37 -2.32 -0.01 1.02 16 14 C -0.10 -1.12 3.60 -88.94 -0.32 -1.44 16 15 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 16 C -0.14 -1.65 7.97 37.16 0.30 -1.35 16 17 C -0.10 -1.61 3.00 -89.24 -0.27 -1.88 16 18 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 19 C 0.16 3.22 4.18 -4.04 -0.02 3.20 16 20 N -0.73 -18.76 5.33 -59.91 -0.32 -19.08 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 25 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 C 0.11 1.92 6.31 -2.97 -0.02 1.90 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 32 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 33 H 0.14 0.99 6.47 -52.49 -0.34 0.65 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.10 0.83 7.82 -51.93 -0.41 0.42 16 37 H 0.10 0.97 7.77 -51.93 -0.40 0.56 16 38 H 0.08 0.59 7.13 -51.93 -0.37 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.77 7.61 -51.93 -0.40 0.37 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.84 6.67 -51.93 -0.35 0.49 16 43 H 0.02 0.50 6.85 -51.93 -0.36 0.14 16 44 H 0.02 0.42 7.55 -51.93 -0.39 0.03 16 45 H 0.38 10.30 7.51 -40.82 -0.31 9.99 16 46 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.90 7.49 -51.93 -0.39 1.51 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -36.92 389.75 -8.23 -45.15 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.43 Total: 6.74 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.28 Total: 1.67 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.28 Total: -63.04 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.09 Total: -14.32 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.92 -8.23 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325533290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.348 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds