Wall clock time and date at job start Tue Mar 31 2020 17:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35739 * 117.00364 * 2 1 4 4 C 1.39286 * 120.84375 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09406 * 180.02562 * 4 3 2 6 6 N 1.31982 * 120.82231 * 0.02562 * 5 4 3 7 7 C 1.31945 * 121.86020 * 359.97438 * 6 5 4 8 8 C 1.37989 * 120.82507 * 359.71953 * 7 6 5 9 9 C 1.50705 * 120.45842 * 180.30286 * 8 7 6 10 10 C 1.50703 * 109.47190 * 265.25628 * 9 8 7 11 11 O 1.21281 * 119.99921 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99857 * 179.97438 * 10 9 8 13 13 C 1.48117 * 127.03504 * 359.68527 * 12 10 9 14 14 C 1.54590 * 103.42100 * 219.28663 * 13 12 10 15 15 H 1.09007 * 110.98670 * 204.36885 * 14 13 12 16 16 C 1.53001 * 110.57915 * 81.17011 * 14 13 12 17 17 C 1.54612 * 102.91334 * 322.86082 * 14 13 12 18 18 H 1.08994 * 110.41783 * 262.76556 * 17 14 13 19 19 C 1.53005 * 110.32501 * 140.59074 * 17 14 13 20 20 N 1.46502 * 109.46959 * 177.92893 * 19 17 14 21 21 C 1.36933 * 119.99880 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00452 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00203 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99663 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00350 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46870 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46829 * 120.00042 * 25 23 21 28 28 H 1.48497 * 109.47279 * 240.00256 * 25 23 21 29 29 C 1.47485 * 127.03279 * 179.97438 * 12 10 9 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99827 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99948 * 1 2 3 33 33 H 1.08001 * 120.45280 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.59468 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.58421 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.46721 * 25.25232 * 9 8 7 37 37 H 1.08996 * 109.47355 * 145.25493 * 9 8 7 38 38 H 1.09003 * 110.65794 * 337.76513 * 13 12 10 39 39 H 1.08997 * 110.66377 * 100.88020 * 13 12 10 40 40 H 1.08995 * 109.46848 * 306.58596 * 16 14 13 41 41 H 1.08993 * 109.47115 * 66.58542 * 16 14 13 42 42 H 1.09006 * 109.46912 * 186.58788 * 16 14 13 43 43 H 1.08993 * 109.47046 * 297.92891 * 19 17 14 44 44 H 1.09001 * 109.46794 * 57.93475 * 19 17 14 45 45 H 0.96994 * 120.00148 * 0.02562 * 20 19 17 46 46 H 0.97002 * 120.00362 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.91379 * 273.87875 * 29 12 10 48 48 H 1.08999 * 109.91109 * 34.96724 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0005 5 6 1.9677 3.5980 -0.0011 6 7 3.2866 3.6457 -0.0016 7 6 4.0231 2.5509 -0.0011 8 6 3.4346 1.3028 0.0058 9 6 4.2838 0.0578 0.0131 10 6 4.4703 -0.4315 -1.4000 11 8 3.9632 0.1712 -2.3223 12 7 5.2006 -1.5387 -1.6389 13 6 5.8903 -2.3855 -0.6384 14 6 7.2214 -2.7513 -1.3344 15 1 7.6307 -3.6779 -0.9317 16 6 8.2315 -1.6104 -1.1968 17 6 6.8003 -2.9349 -2.8107 18 1 6.6391 -3.9900 -3.0317 19 6 7.8652 -2.3541 -3.7433 20 7 7.4714 -2.5818 -5.1359 21 6 8.2758 -2.1461 -6.1548 22 1 9.2002 -1.6342 -5.9319 23 6 7.9030 -2.3623 -7.4744 24 7 6.7761 -2.9857 -7.7461 25 14 8.9999 -1.7672 -8.8644 26 1 10.1997 -1.1008 -8.2974 27 1 9.4224 -2.9256 -9.6921 28 1 8.2499 -0.8029 -9.7086 29 6 5.4815 -2.1517 -2.9507 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2246 2.3566 -0.0014 34 1 1.4009 4.5174 -0.0019 35 1 5.1001 2.6327 -0.0019 36 1 5.2562 0.2839 0.4506 37 1 3.7907 -0.7149 0.6030 38 1 6.0775 -1.8242 0.2770 39 1 5.3091 -3.2833 -0.4282 40 1 7.7827 -0.6830 -1.5526 41 1 8.5137 -1.4993 -0.1500 42 1 9.1176 -1.8362 -1.7901 43 1 7.9609 -1.2834 -3.5632 44 1 8.8210 -2.8418 -3.5516 45 1 6.6410 -3.0413 -5.3362 46 1 6.5157 -3.1372 -8.6682 47 1 4.6736 -2.8304 -3.2239 48 1 5.5861 -1.3752 -3.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325533290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:44 Heat of formation + Delta-G solvation = -47.088603 kcal Electronic energy + Delta-G solvation = -28958.322451 eV Core-core repulsion = 25012.971375 eV Total energy + Delta-G solvation = -3945.351076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88347 -41.06117 -39.25636 -39.06285 -36.42817 -34.49707 -34.03805 -32.78833 -32.21556 -30.81028 -29.20867 -28.43030 -27.57419 -26.73415 -24.94791 -23.91903 -23.63694 -22.87673 -20.36049 -20.29815 -19.32760 -19.04507 -18.21725 -18.14509 -17.38084 -16.87702 -16.74349 -16.50555 -15.97484 -15.86700 -15.67963 -15.38984 -15.31973 -15.18792 -14.63477 -14.54216 -14.30536 -14.12064 -13.98315 -13.64020 -13.35702 -13.11775 -13.06771 -12.94111 -12.79761 -12.75467 -12.71142 -12.50250 -12.16104 -12.13978 -11.89890 -11.62425 -11.52041 -11.34656 -10.99989 -10.94421 -10.54651 -10.12657 -9.75456 -9.67326 -9.01027 -7.97483 -5.26032 0.05909 0.33213 1.43687 1.45635 1.55284 1.65367 2.00432 2.15958 2.53628 2.81442 3.35851 3.43717 3.50608 3.59302 3.64005 3.79247 3.84619 3.87516 3.99391 4.18506 4.21763 4.31056 4.31765 4.32234 4.36893 4.40228 4.57284 4.60183 4.65507 4.66427 4.70388 4.76058 4.80868 4.91170 4.94275 4.98046 5.05010 5.05938 5.12304 5.21733 5.31236 5.38939 5.48015 5.56028 5.59168 6.18064 6.25293 6.61475 7.01022 7.18672 7.30969 8.07933 8.29847 9.26437 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002742 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.184471 B =10210.031874 C =10841.897523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.167 3.833 4 C -0.263 4.263 5 C 0.124 3.876 6 N -0.534 5.534 7 C 0.132 3.868 8 C -0.169 4.169 9 C -0.069 4.069 10 C 0.526 3.474 11 O -0.594 6.594 12 N -0.617 5.617 13 C 0.102 3.898 14 C -0.089 4.089 15 H 0.121 0.879 16 C -0.143 4.143 17 C -0.096 4.096 18 H 0.088 0.912 19 C 0.165 3.835 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.973 3.027 26 H -0.265 1.265 27 H -0.289 1.289 28 H -0.296 1.296 29 C 0.118 3.882 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.032 0.968 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.012 0.988 44 H 0.030 0.970 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.054 0.946 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 4.180 27.642 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.113 3.887 4 C -0.284 4.284 5 C -0.031 4.031 6 N -0.246 5.246 7 C -0.023 4.023 8 C -0.172 4.172 9 C -0.109 4.109 10 C 0.316 3.684 11 O -0.475 6.475 12 N -0.350 5.350 13 C -0.019 4.019 14 C -0.108 4.108 15 H 0.139 0.861 16 C -0.200 4.200 17 C -0.116 4.116 18 H 0.106 0.894 19 C 0.039 3.961 20 N -0.390 5.390 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.802 3.198 26 H -0.189 1.189 27 H -0.216 1.216 28 H -0.224 1.224 29 C -0.006 4.006 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.202 0.798 35 H 0.190 0.810 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.048 0.952 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.447 5.243 27.134 29.206 hybrid contribution -0.687 -0.575 -1.923 2.121 sum -10.135 4.669 25.211 27.570 Atomic orbital electron populations 1.23423 0.75875 1.05885 1.02553 1.86030 1.23932 1.26171 1.87400 1.19393 0.92236 0.85524 0.91500 1.22481 1.02845 0.92490 1.10551 1.23068 0.90018 0.98337 0.91721 1.67745 1.08259 1.32398 1.16232 1.22809 1.01066 0.86254 0.92205 1.19967 0.91523 0.96923 1.08778 1.20384 1.02582 0.95723 0.92224 1.20929 0.76846 0.78437 0.92156 1.90716 1.50682 1.57797 1.48287 1.48915 1.50814 1.26162 1.09089 1.22906 0.91659 0.95310 0.91999 1.22261 0.95572 1.01101 0.91861 0.86099 1.21817 0.98305 0.97045 1.02845 1.22242 0.92987 0.99569 0.96761 0.89359 1.20918 0.95715 0.96576 0.82913 1.42657 1.25218 1.69794 1.01347 1.19655 1.01795 1.29098 0.86987 0.90779 1.25591 0.99215 1.02382 0.99811 1.69826 1.24929 1.48964 1.18360 0.85076 0.78222 0.77216 0.79293 1.18942 1.21573 1.22376 1.21837 0.96966 0.95919 0.85829 0.86279 0.92413 0.90196 0.81711 0.79820 0.81003 0.84475 0.85664 0.86480 0.88658 0.94853 0.89450 0.92918 0.96980 0.95172 0.79617 0.94050 0.92789 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.32 16 2 O -0.32 -6.95 9.77 -90.63 -0.89 -7.84 16 3 C 0.17 3.88 6.70 22.76 0.15 4.03 16 4 C -0.26 -5.03 9.11 22.45 0.20 -4.82 16 5 C 0.12 2.51 11.17 84.60 0.95 3.45 16 6 N -0.53 -13.39 10.36 -196.08 -2.03 -15.42 16 7 C 0.13 3.17 10.84 84.62 0.92 4.08 16 8 C -0.17 -4.01 4.40 -19.68 -0.09 -4.09 16 9 C -0.07 -1.37 4.54 29.10 0.13 -1.23 16 10 C 0.53 16.06 7.88 87.66 0.69 16.75 16 11 O -0.59 -25.31 16.37 -3.03 -0.05 -25.36 16 12 N -0.62 -17.02 3.19 -810.05 -2.59 -19.61 16 13 C 0.10 1.67 6.37 86.61 0.55 2.22 16 14 C -0.09 -1.72 3.60 -9.70 -0.03 -1.75 16 15 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 16 C -0.14 -2.89 7.97 71.98 0.57 -2.32 16 17 C -0.10 -2.94 3.00 -9.90 -0.03 -2.97 16 18 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 19 C 0.16 6.64 4.18 86.38 0.36 7.00 16 20 N -0.75 -39.55 5.33 -343.45 -1.83 -41.38 16 21 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 22 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 25 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 29 C 0.12 4.17 6.31 86.54 0.55 4.72 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.73 7.71 -2.39 -0.02 0.72 16 32 H 0.08 0.63 7.71 -2.38 -0.02 0.61 16 33 H 0.17 2.04 6.47 -2.91 -0.02 2.02 16 34 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.14 1.71 7.82 -2.38 -0.02 1.70 16 37 H 0.13 1.93 7.77 -2.39 -0.02 1.92 16 38 H 0.12 1.09 7.13 -2.39 -0.02 1.07 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.03 0.83 7.61 -2.39 -0.02 0.81 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.22 6.67 -2.38 -0.02 1.20 16 43 H 0.01 0.53 6.85 -2.39 -0.02 0.51 16 44 H 0.03 1.18 7.55 -2.39 -0.02 1.16 16 45 H 0.37 20.98 7.51 -92.71 -0.70 20.28 16 46 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.03 1.62 7.49 -2.39 -0.02 1.60 16 Total: -1.00 -85.95 389.75 2.54 -83.41 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.27 Total: 28.79 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 7.35 Total: 8.84 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -6.17 Total: -137.89 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.93 Total: -33.20 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -85.95 2.54 -83.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325533290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.320 kcal (2) G-P(sol) polarization free energy of solvation -85.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds