Wall clock time and date at job start Tue Mar 31 2020 17:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99916 * 2 1 4 4 C 1.39283 * 120.84336 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09139 * 179.72118 * 4 3 2 6 6 N 1.31975 * 120.82115 * 0.28570 * 5 4 3 7 7 C 1.31947 * 121.86481 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.82444 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45654 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46794 * 264.99629 * 9 8 7 11 11 O 1.21276 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99502 * 180.02562 * 10 9 8 13 13 C 1.47017 * 125.65172 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.27372 * 181.02579 * 13 12 10 15 15 H 1.09010 * 110.71822 * 263.65134 * 14 13 12 16 16 C 1.53000 * 110.72453 * 140.55437 * 14 13 12 17 17 C 1.55159 * 102.94391 * 22.18736 * 14 13 12 18 18 H 1.09007 * 110.99587 * 82.57641 * 17 14 13 19 19 C 1.52995 * 111.00894 * 206.42532 * 17 14 13 20 20 N 1.46498 * 109.47235 * 185.00520 * 19 17 14 21 21 C 1.36938 * 120.00004 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99884 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00199 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00070 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46754 * 90.00014 * 25 23 21 27 27 H 1.48500 * 109.47243 * 210.00052 * 25 23 21 28 28 H 1.48495 * 109.46730 * 329.99932 * 25 23 21 29 29 C 1.47431 * 125.64655 * 179.71736 * 12 10 9 30 30 H 1.08997 * 109.47058 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47266 * 299.99658 * 1 2 3 33 33 H 1.08002 * 120.45862 * 0.02562 * 4 3 2 34 34 H 1.07992 * 119.58834 * 180.29830 * 5 4 3 35 35 H 1.07999 * 119.58901 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47002 * 24.99310 * 9 8 7 37 37 H 1.08996 * 109.47233 * 144.99654 * 9 8 7 38 38 H 1.09005 * 109.88691 * 300.43999 * 13 12 10 39 39 H 1.08996 * 109.88284 * 61.60643 * 13 12 10 40 40 H 1.09001 * 109.46976 * 61.45773 * 16 14 13 41 41 H 1.08996 * 109.46968 * 181.45039 * 16 14 13 42 42 H 1.08990 * 109.47220 * 301.45567 * 16 14 13 43 43 H 1.08997 * 109.46831 * 305.00547 * 19 17 14 44 44 H 1.08998 * 109.47174 * 65.00278 * 19 17 14 45 45 H 0.96998 * 119.99836 * 359.97438 * 20 19 17 46 46 H 0.97001 * 120.00034 * 179.97438 * 24 23 21 47 47 H 1.09000 * 110.36633 * 274.74552 * 29 12 10 48 48 H 1.08997 * 110.36308 * 37.06404 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 0.0054 6 7 3.2863 3.6458 0.0058 7 6 4.0229 2.5511 0.0011 8 6 3.4345 1.3029 -0.0049 9 6 4.2838 0.0581 -0.0107 10 6 4.4647 -0.4199 -1.4284 11 8 3.9538 0.1900 -2.3438 12 7 5.1933 -1.5257 -1.6789 13 6 5.8634 -2.3574 -0.6686 14 6 6.5926 -3.4917 -1.4191 15 1 5.9841 -4.3959 -1.4366 16 6 7.9564 -3.7715 -0.7845 17 6 6.7608 -2.9109 -2.8480 18 1 7.6321 -2.2582 -2.9043 19 6 6.8483 -4.0296 -3.8880 20 7 7.1255 -3.4514 -5.2052 21 6 7.2472 -4.2664 -6.2989 22 1 7.1391 -5.3355 -6.1903 23 6 7.5093 -3.7184 -7.5470 24 7 7.6405 -2.4154 -7.6793 25 14 7.6746 -4.8301 -9.0392 26 1 6.3435 -5.0092 -9.6727 27 1 8.6083 -4.2130 -10.0152 28 1 8.2033 -6.1515 -8.6157 29 6 5.4451 -2.1053 -3.0109 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2243 2.3566 -0.0005 34 1 1.4006 4.5173 0.0099 35 1 5.0998 2.6330 0.0013 36 1 5.2580 0.2808 0.4247 37 1 3.7932 -0.7193 0.5750 38 1 6.5842 -1.7573 -0.1131 39 1 5.1251 -2.7790 0.0135 40 1 7.8176 -4.0936 0.2475 41 1 8.4637 -4.5567 -1.3450 42 1 8.5592 -2.8637 -0.8039 43 1 7.6502 -4.7161 -3.6165 44 1 5.9025 -4.5704 -3.9204 45 1 7.2222 -2.4912 -5.3027 46 1 7.8241 -2.0326 -8.5515 47 1 4.6266 -2.7653 -3.2983 48 1 5.5738 -1.3149 -3.7503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325533291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:47 Heat of formation + Delta-G solvation = -27.037557 kcal Electronic energy + Delta-G solvation = -28563.705842 eV Core-core repulsion = 24619.224245 eV Total energy + Delta-G solvation = -3944.481597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05097 -39.89921 -38.44516 -37.81574 -34.64008 -33.54538 -32.81839 -31.44468 -31.37800 -29.49569 -28.21935 -27.68644 -26.31807 -25.25539 -23.26254 -23.15396 -22.43640 -21.11735 -19.98061 -19.26125 -18.55104 -17.42558 -17.22641 -16.82448 -16.23760 -16.05992 -15.62088 -15.20449 -14.94046 -14.67539 -14.51492 -14.25343 -14.06508 -13.67136 -13.63525 -13.48571 -13.14437 -13.05262 -12.87121 -12.57201 -12.34695 -12.18409 -11.98912 -11.94044 -11.85429 -11.46299 -11.31206 -11.07537 -10.84726 -10.58327 -10.45152 -10.33725 -10.00250 -9.83931 -9.70872 -9.64315 -9.33899 -8.93212 -8.85440 -8.49575 -6.90469 -5.73563 -3.02977 0.85606 1.14581 2.75358 2.83043 3.06814 3.45573 3.50166 3.52265 3.63381 4.18969 4.38095 4.48543 4.51864 4.56317 4.61680 4.64950 4.77357 4.81154 4.83947 4.96280 5.02931 5.08572 5.15607 5.30748 5.33182 5.41869 5.49710 5.50879 5.54782 5.60671 5.68758 5.75508 5.81711 5.83959 6.01873 6.07628 6.15996 6.21864 6.31400 6.31954 6.41508 6.49218 6.72151 6.84949 6.89576 7.64740 7.71689 7.81230 8.29398 8.44606 9.55782 10.13087 10.47346 11.49084 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002513 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.302731 B =11139.405162 C =11909.771840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.148 4.148 9 C -0.084 4.084 10 C 0.529 3.471 11 O -0.532 6.532 12 N -0.619 5.619 13 C 0.105 3.895 14 C -0.099 4.099 15 H 0.086 0.914 16 C -0.140 4.140 17 C -0.100 4.100 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.116 3.884 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.069 0.931 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 5.224 24.479 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.283 4.283 5 C -0.023 4.023 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.152 4.152 9 C -0.124 4.124 10 C 0.318 3.682 11 O -0.409 6.409 12 N -0.354 5.354 13 C -0.019 4.019 14 C -0.118 4.118 15 H 0.105 0.895 16 C -0.197 4.197 17 C -0.120 4.120 18 H 0.104 0.896 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.006 4.006 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.841 6.065 23.896 26.932 hybrid contribution -0.650 -1.050 -0.985 1.579 sum -11.490 5.016 22.911 26.117 Atomic orbital electron populations 1.23139 0.77732 1.04445 1.01572 1.86067 1.21903 1.26253 1.87462 1.19100 0.91814 0.84706 0.91452 1.22170 1.01441 0.93171 1.11523 1.22536 0.90343 0.96909 0.92556 1.67730 1.07093 1.31858 1.15188 1.22520 1.00251 0.86101 0.92150 1.19742 0.90854 0.96451 1.08115 1.20369 1.00802 0.95880 0.95371 1.20059 0.78028 0.79290 0.90872 1.90740 1.47871 1.55575 1.46670 1.48555 1.51326 1.26200 1.09300 1.22147 0.95962 0.92433 0.91317 1.22219 0.97117 0.97491 0.94969 0.89544 1.21742 0.95649 1.02297 1.00036 1.22706 0.97283 0.97990 0.93987 0.89556 1.20576 0.97651 0.92806 0.85194 1.42369 1.86276 1.06939 1.02122 1.19201 1.40964 0.90395 0.86656 0.91196 1.24752 1.02742 0.95780 0.97660 1.69663 1.55699 1.09344 1.23274 0.86197 0.77426 0.79524 0.83075 1.21738 1.21780 1.20783 1.22370 0.96860 0.97430 0.83894 0.92213 0.87834 0.92427 0.84405 0.82577 0.82230 0.87826 0.87758 0.91369 0.91643 0.92704 0.91652 0.92409 0.95806 0.96173 0.78214 0.93478 0.91291 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.41 9.76 -18.94 -0.18 -3.59 16 3 C 0.18 2.15 6.70 -38.82 -0.26 1.89 16 4 C -0.26 -2.60 9.11 -39.30 -0.36 -2.95 16 5 C 0.13 1.37 11.17 -17.59 -0.20 1.17 16 6 N -0.51 -6.27 10.36 -13.33 -0.14 -6.41 16 7 C 0.15 1.72 10.84 -17.59 -0.19 1.53 16 8 C -0.15 -1.78 4.40 -104.34 -0.46 -2.24 16 9 C -0.08 -0.90 4.80 -29.03 -0.14 -1.03 16 10 C 0.53 7.99 7.84 -10.99 -0.09 7.91 16 11 O -0.53 -10.53 16.29 5.56 0.09 -10.44 16 12 N -0.62 -8.77 3.32 -170.38 -0.57 -9.33 16 13 C 0.10 1.08 6.08 -3.07 -0.02 1.06 16 14 C -0.10 -1.12 3.01 -88.78 -0.27 -1.39 16 15 H 0.09 0.95 8.04 -51.92 -0.42 0.54 16 16 C -0.14 -1.35 9.13 37.16 0.34 -1.01 16 17 C -0.10 -1.56 2.51 -88.35 -0.22 -1.79 16 18 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 19 C 0.17 3.22 5.72 -4.04 -0.02 3.20 16 20 N -0.73 -18.56 5.55 -59.91 -0.33 -18.89 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.12 1.96 6.33 -2.41 -0.02 1.95 16 30 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 33 H 0.14 0.96 6.47 -52.49 -0.34 0.63 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.10 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.10 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.07 0.59 7.82 -51.93 -0.41 0.18 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 45 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 48 H 0.08 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -36.36 396.47 -8.29 -44.65 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.68 Total: 6.31 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.15 Total: 2.05 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.31 Total: -62.60 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.09 Total: -14.03 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.36 -8.29 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325533291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.613 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds