Wall clock time and date at job start Tue Mar 31 2020 17:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99916 * 2 1 4 4 C 1.39283 * 120.84336 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09139 * 179.72118 * 4 3 2 6 6 N 1.31975 * 120.82115 * 0.28570 * 5 4 3 7 7 C 1.31947 * 121.86481 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.82444 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45654 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46794 * 264.99629 * 9 8 7 11 11 O 1.21276 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99502 * 180.02562 * 10 9 8 13 13 C 1.47017 * 125.65172 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.27372 * 181.02579 * 13 12 10 15 15 H 1.09010 * 110.71822 * 263.65134 * 14 13 12 16 16 C 1.53000 * 110.72453 * 140.55437 * 14 13 12 17 17 C 1.55159 * 102.94391 * 22.18736 * 14 13 12 18 18 H 1.09007 * 110.99587 * 82.57641 * 17 14 13 19 19 C 1.52995 * 111.00894 * 206.42532 * 17 14 13 20 20 N 1.46498 * 109.47235 * 185.00520 * 19 17 14 21 21 C 1.36938 * 120.00004 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99884 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00199 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00070 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46754 * 90.00014 * 25 23 21 27 27 H 1.48500 * 109.47243 * 210.00052 * 25 23 21 28 28 H 1.48495 * 109.46730 * 329.99932 * 25 23 21 29 29 C 1.47431 * 125.64655 * 179.71736 * 12 10 9 30 30 H 1.08997 * 109.47058 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47266 * 299.99658 * 1 2 3 33 33 H 1.08002 * 120.45862 * 0.02562 * 4 3 2 34 34 H 1.07992 * 119.58834 * 180.29830 * 5 4 3 35 35 H 1.07999 * 119.58901 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47002 * 24.99310 * 9 8 7 37 37 H 1.08996 * 109.47233 * 144.99654 * 9 8 7 38 38 H 1.09005 * 109.88691 * 300.43999 * 13 12 10 39 39 H 1.08996 * 109.88284 * 61.60643 * 13 12 10 40 40 H 1.09001 * 109.46976 * 61.45773 * 16 14 13 41 41 H 1.08996 * 109.46968 * 181.45039 * 16 14 13 42 42 H 1.08990 * 109.47220 * 301.45567 * 16 14 13 43 43 H 1.08997 * 109.46831 * 305.00547 * 19 17 14 44 44 H 1.08998 * 109.47174 * 65.00278 * 19 17 14 45 45 H 0.96998 * 119.99836 * 359.97438 * 20 19 17 46 46 H 0.97001 * 120.00034 * 179.97438 * 24 23 21 47 47 H 1.09000 * 110.36633 * 274.74552 * 29 12 10 48 48 H 1.08997 * 110.36308 * 37.06404 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 0.0054 6 7 3.2863 3.6458 0.0058 7 6 4.0229 2.5511 0.0011 8 6 3.4345 1.3029 -0.0049 9 6 4.2838 0.0581 -0.0107 10 6 4.4647 -0.4199 -1.4284 11 8 3.9538 0.1900 -2.3438 12 7 5.1933 -1.5257 -1.6789 13 6 5.8634 -2.3574 -0.6686 14 6 6.5926 -3.4917 -1.4191 15 1 5.9841 -4.3959 -1.4366 16 6 7.9564 -3.7715 -0.7845 17 6 6.7608 -2.9109 -2.8480 18 1 7.6321 -2.2582 -2.9043 19 6 6.8483 -4.0296 -3.8880 20 7 7.1255 -3.4514 -5.2052 21 6 7.2472 -4.2664 -6.2989 22 1 7.1391 -5.3355 -6.1903 23 6 7.5093 -3.7184 -7.5470 24 7 7.6405 -2.4154 -7.6793 25 14 7.6746 -4.8301 -9.0392 26 1 6.3435 -5.0092 -9.6727 27 1 8.6083 -4.2130 -10.0152 28 1 8.2033 -6.1515 -8.6157 29 6 5.4451 -2.1053 -3.0109 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2243 2.3566 -0.0005 34 1 1.4006 4.5173 0.0099 35 1 5.0998 2.6330 0.0013 36 1 5.2580 0.2808 0.4247 37 1 3.7932 -0.7193 0.5750 38 1 6.5842 -1.7573 -0.1131 39 1 5.1251 -2.7790 0.0135 40 1 7.8176 -4.0936 0.2475 41 1 8.4637 -4.5567 -1.3450 42 1 8.5592 -2.8637 -0.8039 43 1 7.6502 -4.7161 -3.6165 44 1 5.9025 -4.5704 -3.9204 45 1 7.2222 -2.4912 -5.3027 46 1 7.8241 -2.0326 -8.5515 47 1 4.6266 -2.7653 -3.2983 48 1 5.5738 -1.3149 -3.7503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325533291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:46 Heat of formation + Delta-G solvation = -52.478399 kcal Electronic energy + Delta-G solvation = -28564.809040 eV Core-core repulsion = 24619.224245 eV Total energy + Delta-G solvation = -3945.584795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88198 -40.99808 -39.22775 -39.00785 -36.45631 -34.52064 -34.07483 -33.03516 -32.21451 -30.92408 -29.20193 -28.41679 -27.19483 -26.86978 -24.94125 -23.91779 -23.48045 -22.37518 -21.19814 -20.34224 -19.32330 -19.09967 -18.22606 -18.04744 -17.43184 -16.80846 -16.62235 -16.54569 -15.99256 -15.84748 -15.51122 -15.40809 -15.18921 -15.16598 -14.89176 -14.52974 -14.33595 -14.24532 -13.99537 -13.46448 -13.43460 -13.26651 -13.19512 -12.91952 -12.87362 -12.77796 -12.50573 -12.42819 -12.15807 -12.14067 -11.94211 -11.77914 -11.58033 -11.35210 -11.02945 -10.94150 -10.54444 -10.12550 -9.75527 -9.66625 -9.01206 -7.95653 -5.25216 0.06063 0.33108 1.45633 1.48142 1.56524 1.62285 1.98251 2.15944 2.55049 2.81105 3.36433 3.42533 3.45843 3.56625 3.64103 3.77561 3.81355 3.87017 3.98606 4.16232 4.20972 4.27299 4.31188 4.31889 4.39615 4.43654 4.54234 4.55276 4.59682 4.66058 4.70120 4.75622 4.82526 4.87447 4.90447 4.94032 5.05136 5.07335 5.19125 5.21918 5.27608 5.40332 5.48304 5.55636 5.56411 6.17890 6.25842 6.55233 7.01144 7.15131 7.31723 8.08053 8.29836 9.28057 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002513 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.302731 B =11139.405162 C =11909.771840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.167 3.833 4 C -0.263 4.263 5 C 0.125 3.875 6 N -0.533 5.533 7 C 0.132 3.868 8 C -0.169 4.169 9 C -0.070 4.070 10 C 0.523 3.477 11 O -0.591 6.591 12 N -0.618 5.618 13 C 0.102 3.898 14 C -0.087 4.087 15 H 0.095 0.905 16 C -0.136 4.136 17 C -0.091 4.091 18 H 0.075 0.925 19 C 0.165 3.835 20 N -0.748 5.748 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.265 1.265 29 C 0.120 3.880 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.035 0.965 44 H 0.022 0.978 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.055 0.945 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 3.812 27.282 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.113 3.887 4 C -0.283 4.283 5 C -0.031 4.031 6 N -0.246 5.246 7 C -0.023 4.023 8 C -0.172 4.172 9 C -0.110 4.110 10 C 0.313 3.687 11 O -0.472 6.472 12 N -0.351 5.351 13 C -0.019 4.019 14 C -0.107 4.107 15 H 0.113 0.887 16 C -0.193 4.193 17 C -0.110 4.110 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.390 5.390 21 C -0.375 4.375 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.216 1.216 27 H -0.223 1.223 28 H -0.189 1.189 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.202 0.798 35 H 0.191 0.809 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.231 4.588 26.774 29.395 hybrid contribution -0.615 -0.635 -1.816 2.019 sum -11.846 3.953 24.959 27.909 Atomic orbital electron populations 1.23418 0.75879 1.05873 1.02564 1.86030 1.23933 1.26199 1.87416 1.19399 0.92242 0.85520 0.91561 1.22481 1.02837 0.92488 1.10510 1.23068 0.90028 0.98320 0.91718 1.67744 1.08242 1.32383 1.16207 1.22820 1.01101 0.86194 0.92211 1.19966 0.91508 0.96933 1.08778 1.20384 1.02635 0.95816 0.92129 1.20949 0.76848 0.78647 0.92237 1.90708 1.50279 1.57375 1.48814 1.48642 1.51183 1.26402 1.08862 1.22461 0.97057 0.91879 0.90520 1.22225 0.98727 0.98054 0.91673 0.88676 1.21730 0.94070 1.02047 1.01480 1.22520 0.95883 0.96614 0.96017 0.90626 1.20745 0.97598 0.94118 0.83685 1.42636 1.86265 1.06256 1.03891 1.19662 1.39143 0.91121 0.87616 0.90279 1.25628 1.03579 0.97156 1.00777 1.69842 1.57697 1.11277 1.23486 0.85114 0.77073 0.78255 0.79173 1.21636 1.22266 1.18947 1.22067 0.97230 0.96035 0.84945 0.92358 0.86316 0.90226 0.81734 0.79818 0.80899 0.84493 0.85770 0.88566 0.88460 0.89551 0.92710 0.92431 0.94723 0.96055 0.79761 0.94108 0.92678 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 113.37 1.12 1.32 16 2 O -0.32 -6.85 9.76 -90.69 -0.89 -7.74 16 3 C 0.17 3.78 6.70 22.76 0.15 3.94 16 4 C -0.26 -4.89 9.11 22.45 0.20 -4.69 16 5 C 0.12 2.44 11.17 84.60 0.95 3.39 16 6 N -0.53 -13.02 10.36 -196.09 -2.03 -15.06 16 7 C 0.13 3.07 10.84 84.62 0.92 3.99 16 8 C -0.17 -3.92 4.40 -19.68 -0.09 -4.01 16 9 C -0.07 -1.36 4.80 29.10 0.14 -1.22 16 10 C 0.52 15.67 7.84 87.66 0.69 16.36 16 11 O -0.59 -24.44 16.29 -3.02 -0.05 -24.49 16 12 N -0.62 -17.03 3.32 -811.36 -2.70 -19.73 16 13 C 0.10 1.75 6.08 86.73 0.53 2.28 16 14 C -0.09 -1.75 3.01 -9.60 -0.03 -1.78 16 15 H 0.09 1.79 8.04 -2.38 -0.02 1.77 16 16 C -0.14 -2.16 9.13 71.98 0.66 -1.50 16 17 C -0.09 -2.83 2.51 -9.33 -0.02 -2.85 16 18 H 0.08 2.53 8.04 -2.38 -0.02 2.51 16 19 C 0.17 6.43 5.72 86.38 0.49 6.93 16 20 N -0.75 -38.93 5.55 -343.47 -1.91 -40.84 16 21 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 25 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 29 C 0.12 4.24 6.33 86.93 0.55 4.79 16 30 H 0.06 0.72 7.71 -2.39 -0.02 0.70 16 31 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.61 7.71 -2.39 -0.02 0.59 16 33 H 0.17 1.97 6.47 -2.91 -0.02 1.95 16 34 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.14 1.69 8.06 -2.39 -0.02 1.67 16 37 H 0.12 1.92 7.76 -2.39 -0.02 1.90 16 38 H 0.10 1.19 7.82 -2.38 -0.02 1.18 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 43 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.02 0.84 7.96 -2.39 -0.02 0.82 16 45 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 46 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.05 2.05 7.91 -2.39 -0.02 2.03 16 48 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -83.47 396.47 2.54 -80.93 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.25 Total: 29.57 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 7.56 Total: 9.68 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -6.35 Total: -137.19 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.93 Total: -32.22 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -83.47 2.54 -80.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325533291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.449 kcal (2) G-P(sol) polarization free energy of solvation -83.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds