Wall clock time and date at job start Tue Mar 31 2020 17:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.88551 * 2 1 4 4 C 1.54906 * 111.00371 * 123.91559 * 2 1 3 5 5 N 1.47426 * 104.82927 * 155.08381 * 4 2 1 6 6 C 1.34786 * 125.64506 * 155.83781 * 5 4 2 7 7 O 1.21274 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47280 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47264 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47062 * 179.97438 * 10 9 8 12 12 C 1.35765 * 119.62875 * 269.72950 * 11 10 9 13 13 C 1.35346 * 120.70132 * 179.72071 * 12 11 10 14 14 C 1.40192 * 119.95058 * 0.52999 * 13 12 11 15 15 C 1.36403 * 119.26308 * 359.74459 * 14 13 12 16 16 C 1.34661 * 119.62238 * 90.00001 * 11 10 9 17 17 O 1.22057 * 119.98629 * 0.02562 * 16 11 10 18 18 C 1.47018 * 108.70482 * 335.87354 * 5 4 2 19 19 C 1.54323 * 107.26961 * 1.05894 * 18 5 4 20 20 H 1.09007 * 110.87111 * 140.62871 * 19 18 5 21 21 N 1.46496 * 110.71855 * 263.82489 * 19 18 5 22 22 C 1.36934 * 120.00548 * 268.52224 * 21 19 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.08992 * 109.46918 * 183.88410 * 1 2 3 31 31 H 1.08998 * 109.46972 * 303.88101 * 1 2 3 32 32 H 1.08998 * 109.47297 * 63.88244 * 1 2 3 33 33 H 1.08997 * 110.37344 * 273.92539 * 4 2 1 34 34 H 1.09002 * 110.36816 * 36.25260 * 4 2 1 35 35 H 1.09004 * 109.46956 * 300.00046 * 8 6 5 36 36 H 1.09000 * 109.47112 * 59.99967 * 8 6 5 37 37 H 1.09007 * 109.46467 * 299.99927 * 9 8 6 38 38 H 1.08997 * 109.46906 * 59.99474 * 9 8 6 39 39 H 1.08996 * 109.47177 * 299.99846 * 10 9 8 40 40 H 1.09000 * 109.47181 * 59.99681 * 10 9 8 41 41 H 1.08001 * 119.64446 * 359.97438 * 12 11 10 42 42 H 1.07995 * 120.02058 * 180.27307 * 13 12 11 43 43 H 1.07995 * 120.36966 * 179.77336 * 14 13 12 44 44 H 1.08001 * 120.34348 * 180.02562 * 15 14 13 45 45 H 1.09002 * 109.88413 * 241.63875 * 18 5 4 46 46 H 1.09002 * 109.88147 * 120.47478 * 18 5 4 47 47 H 0.96999 * 119.99694 * 88.52748 * 21 19 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8069 1.2001 5 7 3.4272 -1.2432 0.7730 6 6 4.4481 -1.5607 1.5936 7 8 4.3016 -1.4989 2.7959 8 6 5.7719 -1.9924 1.0172 9 6 6.7499 -2.2929 2.1548 10 6 8.0941 -2.7306 1.5695 11 7 9.0307 -3.0177 2.6588 12 6 9.8238 -2.0268 3.1407 13 6 10.6928 -2.2665 4.1503 14 6 10.7879 -3.5520 4.7015 15 6 9.9941 -4.5476 4.2124 16 6 9.0990 -4.2628 3.1671 17 8 8.3833 -5.1445 2.7197 18 6 3.4675 -1.2739 -0.6964 19 6 2.0862 -0.8075 -1.2024 20 1 2.1892 -0.1700 -2.0806 21 7 1.2269 -1.9569 -1.4968 22 6 1.2058 -2.4911 -2.7575 23 1 1.8231 -2.0651 -3.5347 24 6 0.3913 -3.5798 -3.0365 25 7 0.3714 -4.0935 -4.2482 26 14 -0.6757 -4.3169 -1.6920 27 1 0.0825 -5.3806 -0.9857 28 1 -1.0571 -3.2560 -0.7254 29 1 -1.9006 -4.9000 -2.2960 30 1 -0.3633 -1.0252 0.0696 31 1 -0.3633 0.5729 0.8532 32 1 -0.3634 0.4524 -0.9227 33 1 2.1560 -0.1726 2.0837 34 1 1.4520 -1.6708 1.4020 35 1 5.6303 -2.8892 0.4139 36 1 6.1741 -1.1944 0.3931 37 1 6.8915 -1.3963 2.7584 38 1 6.3475 -3.0910 2.7785 39 1 7.9528 -3.6269 0.9657 40 1 8.4962 -1.9321 0.9460 41 1 9.7577 -1.0357 2.7166 42 1 11.3154 -1.4690 4.5281 43 1 11.4815 -3.7517 5.5048 44 1 10.0527 -5.5442 4.6244 45 1 3.6651 -2.2890 -1.0407 46 1 4.2426 -0.5993 -1.0601 47 1 0.6728 -2.3396 -0.7986 48 1 -0.1975 -4.8546 -4.4430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327898466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:42 Heat of formation + Delta-G solvation = -46.243617 kcal Electronic energy + Delta-G solvation = -28325.520787 eV Core-core repulsion = 24380.206352 eV Total energy + Delta-G solvation = -3945.314435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.31229 -41.21560 -39.22218 -37.97983 -36.50633 -35.79842 -34.16614 -33.61144 -32.59635 -30.79210 -29.67350 -29.02161 -27.03078 -25.51368 -24.86404 -24.22545 -23.36203 -22.51684 -20.88305 -20.13682 -19.81551 -18.60914 -18.27927 -17.89938 -17.47940 -17.22216 -16.81800 -16.61167 -16.32023 -15.93223 -15.85181 -15.41695 -15.24137 -15.00896 -14.63370 -14.53463 -14.24107 -13.94168 -13.66269 -13.51706 -13.28780 -13.21428 -13.06598 -13.05834 -12.93866 -12.87578 -12.70626 -12.57420 -12.29469 -12.13044 -11.96425 -11.86688 -11.61214 -11.43914 -11.14486 -11.04138 -11.00158 -10.88243 -9.68173 -9.32010 -8.95639 -8.02445 -5.34135 -0.05656 0.93819 1.33323 1.36447 1.42084 1.57208 1.64605 2.05744 2.45786 2.70132 3.28689 3.36740 3.57062 3.64665 3.71334 3.77107 3.86490 3.94119 3.97717 4.02854 4.13564 4.24469 4.28955 4.37931 4.41973 4.46393 4.55601 4.58143 4.61979 4.64487 4.66354 4.82497 4.95367 4.97079 4.98644 5.05782 5.14738 5.19262 5.22642 5.25575 5.31148 5.41440 5.48111 5.69777 5.80735 6.12345 6.22417 6.53609 7.00592 7.07367 7.10833 7.84663 8.00749 9.18560 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.002410 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.825056 B =11613.138457 C =12500.100475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 H 0.116 0.884 4 C 0.108 3.892 5 N -0.612 5.612 6 C 0.520 3.480 7 O -0.593 6.593 8 C -0.125 4.125 9 C -0.104 4.104 10 C 0.090 3.910 11 N -0.494 5.494 12 C 0.134 3.866 13 C -0.235 4.235 14 C 0.007 3.993 15 C -0.290 4.290 16 C 0.488 3.512 17 O -0.617 6.617 18 C 0.079 3.921 19 C 0.164 3.836 20 H 0.090 0.910 21 N -0.741 5.741 22 C -0.217 4.217 23 H 0.073 0.927 24 C -0.057 4.057 25 N -0.979 5.979 26 Si 0.934 3.066 27 H -0.293 1.293 28 H -0.251 1.251 29 H -0.298 1.298 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.207 0.793 42 H 0.184 0.816 43 H 0.166 0.834 44 H 0.138 0.862 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.362 0.638 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.978 14.183 15.883 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.134 0.866 4 C -0.014 4.014 5 N -0.344 5.344 6 C 0.310 3.690 7 O -0.474 6.474 8 C -0.165 4.165 9 C -0.143 4.143 10 C -0.031 4.031 11 N -0.202 5.202 12 C 0.007 3.993 13 C -0.257 4.257 14 C -0.015 4.015 15 C -0.312 4.312 16 C 0.293 3.707 17 O -0.506 6.506 18 C -0.046 4.046 19 C 0.055 3.945 20 H 0.108 0.892 21 N -0.383 5.383 22 C -0.348 4.348 23 H 0.091 0.909 24 C -0.249 4.249 25 N -0.630 5.630 26 Si 0.763 3.237 27 H -0.220 1.220 28 H -0.176 1.176 29 H -0.225 1.225 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.224 0.776 42 H 0.201 0.799 43 H 0.183 0.817 44 H 0.156 0.844 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.196 0.804 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.522 13.628 15.998 30.081 hybrid contribution -1.296 -1.723 0.496 2.212 sum 20.227 11.905 16.494 28.686 Atomic orbital electron populations 1.21562 0.93681 1.01228 1.02511 1.22638 0.96665 0.99728 0.92916 0.86555 1.22283 0.82999 0.97732 0.98423 1.48608 1.12005 1.65698 1.08086 1.20908 0.86203 0.76149 0.85701 1.90658 1.84349 1.55971 1.16461 1.21549 0.90712 1.04845 0.99388 1.21480 0.93649 1.01654 0.97498 1.22151 0.88390 1.04241 0.88289 1.45619 1.32990 1.10017 1.31613 1.22864 0.88394 0.94061 0.93968 1.21219 1.04795 0.98973 1.00688 1.21883 0.92720 0.91780 0.95095 1.22109 1.03449 1.03068 1.02587 1.17706 0.85563 0.81876 0.85560 1.90938 1.48438 1.46260 1.64927 1.23078 1.01215 1.02188 0.78092 1.21496 0.88185 0.88043 0.96800 0.89167 1.42827 1.50831 1.35935 1.08731 1.19069 1.19114 1.08755 0.87815 0.90897 1.25290 1.02054 0.99788 0.97787 1.69835 1.44691 1.27458 1.21053 0.85737 0.78895 0.78960 0.80074 1.21982 1.17600 1.22475 0.94625 0.90795 0.91894 0.90305 0.93864 0.88643 0.84381 0.89843 0.94985 0.90194 0.83770 0.77598 0.79880 0.81681 0.84405 0.92452 0.88071 0.80406 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.85 71.98 0.64 -2.82 16 2 C -0.10 -2.51 3.51 -9.40 -0.03 -2.55 16 3 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 4 C 0.11 3.11 6.33 86.85 0.55 3.66 16 5 N -0.61 -17.61 3.33 -811.79 -2.70 -20.31 16 6 C 0.52 15.36 7.85 87.66 0.69 16.05 16 7 O -0.59 -21.92 16.24 -3.01 -0.05 -21.96 16 8 C -0.13 -2.57 4.89 29.85 0.15 -2.42 16 9 C -0.10 -2.19 4.83 30.59 0.15 -2.05 16 10 C 0.09 1.46 5.33 86.38 0.46 1.92 16 11 N -0.49 -8.90 2.58 -650.99 -1.68 -10.58 16 12 C 0.13 1.13 10.28 83.42 0.86 1.99 16 13 C -0.23 -1.60 10.01 22.08 0.22 -1.38 16 14 C 0.01 0.08 10.10 22.32 0.23 0.30 16 15 C -0.29 -5.95 9.99 22.40 0.22 -5.73 16 16 C 0.49 13.19 7.41 84.82 0.63 13.82 16 17 O -0.62 -23.38 16.64 -5.50 -0.09 -23.47 16 18 C 0.08 2.18 6.23 86.73 0.54 2.72 16 19 C 0.16 5.11 3.39 46.18 0.16 5.27 16 20 H 0.09 2.71 8.09 -2.38 -0.02 2.69 16 21 N -0.74 -31.05 4.30 -317.35 -1.37 -32.42 16 22 C -0.22 -11.30 10.44 84.03 0.88 -10.42 16 23 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 24 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 25 N -0.98 -61.06 13.97 21.65 0.30 -60.75 16 26 Si 0.93 45.37 27.74 68.60 1.90 47.27 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 30 H 0.03 1.11 6.48 -2.39 -0.02 1.09 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 34 H 0.04 1.41 7.98 -2.39 -0.02 1.40 16 35 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.58 8.10 -2.38 -0.02 1.56 16 38 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.08 1.72 7.39 -2.39 -0.02 1.70 16 40 H 0.14 0.85 8.01 -2.39 -0.02 0.83 16 41 H 0.21 -0.19 8.03 -2.91 -0.02 -0.22 16 42 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 44 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 45 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 46 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.36 15.49 4.17 -92.71 -0.39 15.10 16 48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -86.20 392.29 3.61 -82.59 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.50 Total: 24.07 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.79 Total: 15.57 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -5.45 Total: -124.06 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.14 Total: -45.43 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Total: -86.20 3.61 -82.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327898466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.346 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds