Wall clock time and date at job start Tue Mar 31 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46676 * 2 1 4 4 C 1.50704 * 109.46860 * 240.00187 * 2 1 3 5 5 O 1.21276 * 119.99905 * 239.99550 * 4 2 1 6 6 N 1.34782 * 119.99821 * 60.00114 * 4 2 1 7 7 C 1.46504 * 119.99739 * 185.24330 * 6 4 2 8 8 C 1.52998 * 109.45660 * 54.99930 * 7 6 4 9 9 O 1.42900 * 109.47286 * 54.78879 * 8 7 6 10 10 C 1.53033 * 109.44957 * 174.96437 * 7 6 4 11 11 C 1.53199 * 109.31112 * 58.64864 * 10 7 6 12 12 N 1.46929 * 108.77109 * 54.63372 * 11 10 7 13 13 C 1.36943 * 120.62611 * 126.41559 * 12 11 10 14 14 H 1.08007 * 119.99493 * 210.46893 * 13 12 11 15 15 C 1.38802 * 120.00144 * 30.47289 * 13 12 11 16 16 N 1.31620 * 120.00548 * 14.76817 * 15 13 12 17 17 Si 1.86804 * 120.00003 * 194.77192 * 15 13 12 18 18 H 1.48503 * 109.47282 * 89.99970 * 17 15 13 19 19 H 1.48502 * 109.47206 * 210.00043 * 17 15 13 20 20 H 1.48500 * 109.47149 * 329.99855 * 17 15 13 21 21 C 1.46925 * 118.74143 * 306.39001 * 12 11 10 22 22 C 1.53038 * 109.45712 * 295.02960 * 7 6 4 23 23 C 1.50696 * 109.47136 * 120.00313 * 2 1 3 24 24 C 1.38678 * 120.41485 * 239.72284 * 23 2 1 25 25 C 1.38624 * 118.41762 * 179.78631 * 24 23 2 26 26 C 1.38231 * 119.16344 * 0.50659 * 25 24 23 27 27 N 1.31859 * 120.75961 * 359.73070 * 26 25 24 28 28 C 1.31881 * 121.72485 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47195 * 59.99579 * 1 2 3 30 30 H 1.08994 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 299.99801 * 1 2 3 32 32 H 0.96994 * 120.00212 * 5.24213 * 6 4 2 33 33 H 1.09009 * 109.46975 * 174.78362 * 8 7 6 34 34 H 1.09001 * 109.47499 * 294.78142 * 8 7 6 35 35 H 0.96697 * 114.00532 * 180.02562 * 9 8 7 36 36 H 1.08993 * 109.50098 * 178.59796 * 10 7 6 37 37 H 1.09002 * 109.49905 * 298.70094 * 10 7 6 38 38 H 1.09002 * 109.58964 * 294.85002 * 11 10 7 39 39 H 1.09002 * 109.58759 * 174.41953 * 11 10 7 40 40 H 0.96998 * 120.00774 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58728 * 293.82012 * 21 12 11 42 42 H 1.08999 * 109.58541 * 173.39493 * 21 12 11 43 43 H 1.08998 * 109.49946 * 61.31159 * 22 7 6 44 44 H 1.09004 * 109.49760 * 181.40463 * 22 7 6 45 45 H 1.07993 * 120.78971 * 0.02562 * 24 23 2 46 46 H 1.08000 * 120.42138 * 180.21780 * 25 24 23 47 47 H 1.07997 * 119.61964 * 179.75206 * 26 25 24 48 48 H 1.08001 * 119.61138 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.0975 -1.0034 -3.6487 8 6 1.5743 -2.4371 -3.5404 9 8 0.1637 -2.4135 -3.3130 10 6 1.5020 -0.3358 -4.8902 11 6 2.0008 1.1102 -4.9763 12 7 3.4696 1.1068 -4.9388 13 6 4.1938 1.7385 -5.9143 14 1 5.1692 1.3652 -6.1899 15 6 3.6746 2.8584 -6.5489 16 7 2.6393 3.4864 -6.0330 17 14 4.4451 3.4744 -8.1352 18 1 3.7853 2.8192 -9.2931 19 1 4.2688 4.9457 -8.2325 20 1 5.8938 3.1480 -8.1412 21 6 4.1464 0.4132 -3.8344 22 6 3.6236 -1.0248 -3.7611 23 6 2.0324 -0.7105 1.2304 24 6 2.8349 -0.0465 2.1460 25 6 3.2700 -0.7385 3.2656 26 6 2.9010 -2.0610 3.4256 27 7 2.1405 -2.6619 2.5316 28 6 1.7035 -2.0331 1.4579 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2136 0.5805 -2.5451 33 1 1.7840 -2.9714 -4.4671 34 1 2.0678 -2.9423 -2.7101 35 1 -0.2367 -3.2900 -3.2334 36 1 1.8128 -0.8814 -5.7811 37 1 0.4143 -0.3418 -4.8202 38 1 1.6150 1.6808 -4.1314 39 1 1.6601 1.5593 -5.9093 40 1 2.2766 4.2693 -6.4762 41 1 3.9357 0.9269 -2.8965 42 1 5.2215 0.4025 -4.0140 43 1 4.0459 -1.5214 -2.8876 44 1 3.9145 -1.5640 -4.6627 45 1 3.1110 0.9862 1.9924 46 1 3.8934 -0.2520 4.0011 47 1 3.2392 -2.6083 4.2931 48 1 1.0827 -2.5585 0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328558633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:19 Heat of formation + Delta-G solvation = -28.971951 kcal Electronic energy + Delta-G solvation = -30312.717744 eV Core-core repulsion = 26368.152265 eV Total energy + Delta-G solvation = -3944.565479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75392 -39.79169 -37.64618 -36.10789 -34.58336 -34.04519 -32.27142 -31.87207 -30.50438 -29.95592 -29.34178 -26.72375 -25.02755 -23.89379 -23.58862 -22.82685 -22.28366 -20.94863 -19.96775 -18.70197 -17.35771 -17.13440 -17.11092 -16.68897 -16.09128 -15.54166 -14.94858 -14.91998 -14.72142 -14.24955 -14.07914 -13.83368 -13.70042 -13.61363 -13.30383 -13.15117 -13.11280 -12.72082 -12.66455 -12.46957 -12.25215 -11.79565 -11.53664 -11.45750 -11.40359 -11.23703 -10.97199 -10.78131 -10.42432 -10.31450 -10.05590 -9.92562 -9.83821 -9.72502 -9.59183 -9.47781 -9.07360 -8.93951 -8.58891 -8.49232 -6.66678 -5.82873 -3.27782 1.06790 1.24809 2.91837 3.35116 3.42280 3.42941 3.43476 3.85293 4.31405 4.43767 4.47671 4.59646 4.66959 4.86338 4.91124 5.03032 5.09325 5.19232 5.31672 5.35154 5.40841 5.50390 5.53405 5.58288 5.65943 5.71509 5.75470 5.78215 5.97325 5.99189 6.03612 6.08324 6.24096 6.27715 6.29763 6.55341 6.56021 6.63710 6.65476 6.79396 6.91347 7.04167 7.25564 7.55532 7.76585 7.78180 7.92418 7.95249 8.43117 8.55452 9.18377 9.80506 10.38674 11.25604 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003278 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.430212 B = 8538.718030 C = 9168.551210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.104 0.896 4 C 0.524 3.476 5 O -0.543 6.543 6 N -0.695 5.695 7 C 0.195 3.805 8 C 0.063 3.937 9 O -0.566 6.566 10 C -0.143 4.143 11 C 0.174 3.826 12 N -0.591 5.591 13 C -0.253 4.253 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.904 5.904 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.154 3.846 22 C -0.143 4.143 23 C -0.110 4.110 24 C -0.070 4.070 25 C -0.177 4.177 26 C 0.091 3.909 27 N -0.488 5.488 28 C 0.134 3.866 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.370 0.630 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.152 0.848 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -8.546 14.277 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 H 0.122 0.878 4 C 0.310 3.690 5 O -0.421 6.421 6 N -0.346 5.346 7 C 0.109 3.891 8 C -0.016 4.016 9 O -0.370 6.370 10 C -0.182 4.182 11 C 0.048 3.952 12 N -0.314 5.314 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.027 3.973 22 C -0.183 4.183 23 C -0.112 4.112 24 C -0.096 4.096 25 C -0.196 4.196 26 C -0.066 4.066 27 N -0.197 5.197 28 C -0.023 4.023 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.215 0.785 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.169 0.831 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.906 -9.317 14.365 17.811 hybrid contribution 0.399 1.140 -1.061 1.608 sum -4.507 -8.176 13.304 16.253 Atomic orbital electron populations 1.21761 0.91673 1.03113 1.02952 1.20256 0.97924 1.00397 0.90761 0.87753 1.20149 0.79919 0.84622 0.84314 1.90624 1.37724 1.27059 1.86676 1.45902 1.57335 1.26561 1.04793 1.20271 0.94680 0.88956 0.85184 1.22737 0.81217 0.97673 0.99943 1.86473 1.21708 1.33084 1.95733 1.22458 0.99547 1.01013 0.95204 1.20728 0.83615 0.89424 1.01437 1.44038 1.01124 1.61502 1.24726 1.19188 1.01768 1.05607 1.11705 0.91829 1.25092 0.98756 0.95625 0.99924 1.69992 1.26287 1.19934 1.38576 0.86286 0.78997 0.77699 0.83739 1.21432 1.21756 1.20445 1.20790 0.95832 0.89672 0.90990 1.22377 0.93531 1.00630 1.01755 1.20351 0.99008 0.95905 0.95958 1.21495 0.94586 1.00281 0.93202 1.22064 1.02207 0.96337 0.99039 1.22726 0.94058 0.92307 0.97469 1.67704 1.10592 1.38529 1.02835 1.22469 0.95756 0.90876 0.93163 0.91103 0.91783 0.91634 0.76259 0.93730 0.91687 0.78503 0.91389 0.91875 0.96577 0.89470 0.93642 0.96620 0.92931 0.90949 0.91745 0.84891 0.84953 0.83101 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.91 37.16 0.33 -1.02 16 2 C -0.07 -0.84 2.92 -92.92 -0.27 -1.11 16 3 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 4 C 0.52 7.80 6.44 -10.98 -0.07 7.73 16 5 O -0.54 -9.44 11.44 5.56 0.06 -9.38 16 6 N -0.70 -10.68 3.76 -47.57 -0.18 -10.86 16 7 C 0.19 3.24 0.44 -131.78 -0.06 3.19 16 8 C 0.06 0.93 5.54 37.16 0.21 1.14 16 9 O -0.57 -7.60 12.94 -35.23 -0.46 -8.06 16 10 C -0.14 -2.60 4.89 -26.61 -0.13 -2.73 16 11 C 0.17 3.88 5.00 -3.71 -0.02 3.86 16 12 N -0.59 -14.27 2.98 -172.32 -0.51 -14.78 16 13 C -0.25 -6.79 9.57 -15.06 -0.14 -6.94 16 14 H 0.06 1.70 7.87 -52.48 -0.41 1.29 16 15 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 16 N -0.90 -25.31 11.24 55.49 0.62 -24.69 16 17 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.15 3.24 6.26 -3.71 -0.02 3.22 16 22 C -0.14 -2.61 4.74 -26.62 -0.13 -2.73 16 23 C -0.11 -1.35 4.40 -104.49 -0.46 -1.81 16 24 C -0.07 -0.76 9.81 -39.28 -0.39 -1.15 16 25 C -0.18 -1.75 10.11 -39.44 -0.40 -2.15 16 26 C 0.09 1.00 11.18 -17.54 -0.20 0.81 16 27 N -0.49 -6.62 10.36 -13.25 -0.14 -6.76 16 28 C 0.13 1.80 9.12 -17.55 -0.16 1.64 16 29 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 30 H 0.06 0.65 7.41 -51.93 -0.38 0.26 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 6.05 6.71 -40.82 -0.27 5.77 16 33 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 35 H 0.37 3.38 9.12 45.56 0.42 3.79 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 38 H 0.02 0.37 6.84 -51.93 -0.36 0.01 16 39 H 0.09 2.22 6.17 -51.93 -0.32 1.90 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 42 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.07 1.34 6.40 -51.93 -0.33 1.01 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.13 1.18 8.00 -52.49 -0.42 0.76 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.15 1.97 7.53 -52.49 -0.40 1.57 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -31.94 376.22 -8.45 -40.39 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.50 Total: 10.18 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.99 Total: 1.98 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.21 Total: -57.09 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.39 Total: -17.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.94 -8.45 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328558633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.420 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds