Wall clock time and date at job start Tue Mar 31 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46676 * 2 1 4 4 C 1.50704 * 109.46860 * 240.00187 * 2 1 3 5 5 O 1.21276 * 119.99905 * 239.99550 * 4 2 1 6 6 N 1.34782 * 119.99821 * 60.00114 * 4 2 1 7 7 C 1.46504 * 119.99739 * 185.24330 * 6 4 2 8 8 C 1.52998 * 109.45660 * 54.99930 * 7 6 4 9 9 O 1.42900 * 109.47286 * 54.78879 * 8 7 6 10 10 C 1.53033 * 109.44957 * 174.96437 * 7 6 4 11 11 C 1.53199 * 109.31112 * 58.64864 * 10 7 6 12 12 N 1.46929 * 108.77109 * 54.63372 * 11 10 7 13 13 C 1.36943 * 120.62611 * 126.41559 * 12 11 10 14 14 H 1.08007 * 119.99493 * 210.46893 * 13 12 11 15 15 C 1.38802 * 120.00144 * 30.47289 * 13 12 11 16 16 N 1.31620 * 120.00548 * 14.76817 * 15 13 12 17 17 Si 1.86804 * 120.00003 * 194.77192 * 15 13 12 18 18 H 1.48503 * 109.47282 * 89.99970 * 17 15 13 19 19 H 1.48502 * 109.47206 * 210.00043 * 17 15 13 20 20 H 1.48500 * 109.47149 * 329.99855 * 17 15 13 21 21 C 1.46925 * 118.74143 * 306.39001 * 12 11 10 22 22 C 1.53038 * 109.45712 * 295.02960 * 7 6 4 23 23 C 1.50696 * 109.47136 * 120.00313 * 2 1 3 24 24 C 1.38678 * 120.41485 * 239.72284 * 23 2 1 25 25 C 1.38624 * 118.41762 * 179.78631 * 24 23 2 26 26 C 1.38231 * 119.16344 * 0.50659 * 25 24 23 27 27 N 1.31859 * 120.75961 * 359.73070 * 26 25 24 28 28 C 1.31881 * 121.72485 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47195 * 59.99579 * 1 2 3 30 30 H 1.08994 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 299.99801 * 1 2 3 32 32 H 0.96994 * 120.00212 * 5.24213 * 6 4 2 33 33 H 1.09009 * 109.46975 * 174.78362 * 8 7 6 34 34 H 1.09001 * 109.47499 * 294.78142 * 8 7 6 35 35 H 0.96697 * 114.00532 * 180.02562 * 9 8 7 36 36 H 1.08993 * 109.50098 * 178.59796 * 10 7 6 37 37 H 1.09002 * 109.49905 * 298.70094 * 10 7 6 38 38 H 1.09002 * 109.58964 * 294.85002 * 11 10 7 39 39 H 1.09002 * 109.58759 * 174.41953 * 11 10 7 40 40 H 0.96998 * 120.00774 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58728 * 293.82012 * 21 12 11 42 42 H 1.08999 * 109.58541 * 173.39493 * 21 12 11 43 43 H 1.08998 * 109.49946 * 61.31159 * 22 7 6 44 44 H 1.09004 * 109.49760 * 181.40463 * 22 7 6 45 45 H 1.07993 * 120.78971 * 0.02562 * 24 23 2 46 46 H 1.08000 * 120.42138 * 180.21780 * 25 24 23 47 47 H 1.07997 * 119.61964 * 179.75206 * 26 25 24 48 48 H 1.08001 * 119.61138 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.0975 -1.0034 -3.6487 8 6 1.5743 -2.4371 -3.5404 9 8 0.1637 -2.4135 -3.3130 10 6 1.5020 -0.3358 -4.8902 11 6 2.0008 1.1102 -4.9763 12 7 3.4696 1.1068 -4.9388 13 6 4.1938 1.7385 -5.9143 14 1 5.1692 1.3652 -6.1899 15 6 3.6746 2.8584 -6.5489 16 7 2.6393 3.4864 -6.0330 17 14 4.4451 3.4744 -8.1352 18 1 3.7853 2.8192 -9.2931 19 1 4.2688 4.9457 -8.2325 20 1 5.8938 3.1480 -8.1412 21 6 4.1464 0.4132 -3.8344 22 6 3.6236 -1.0248 -3.7611 23 6 2.0324 -0.7105 1.2304 24 6 2.8349 -0.0465 2.1460 25 6 3.2700 -0.7385 3.2656 26 6 2.9010 -2.0610 3.4256 27 7 2.1405 -2.6619 2.5316 28 6 1.7035 -2.0331 1.4579 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2136 0.5805 -2.5451 33 1 1.7840 -2.9714 -4.4671 34 1 2.0678 -2.9423 -2.7101 35 1 -0.2367 -3.2900 -3.2334 36 1 1.8128 -0.8814 -5.7811 37 1 0.4143 -0.3418 -4.8202 38 1 1.6150 1.6808 -4.1314 39 1 1.6601 1.5593 -5.9093 40 1 2.2766 4.2693 -6.4762 41 1 3.9357 0.9269 -2.8965 42 1 5.2215 0.4025 -4.0140 43 1 4.0459 -1.5214 -2.8876 44 1 3.9145 -1.5640 -4.6627 45 1 3.1110 0.9862 1.9924 46 1 3.8934 -0.2520 4.0011 47 1 3.2392 -2.6083 4.2931 48 1 1.0827 -2.5585 0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328558633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:18 Heat of formation + Delta-G solvation = -51.073790 kcal Electronic energy + Delta-G solvation = -30313.676151 eV Core-core repulsion = 26368.152265 eV Total energy + Delta-G solvation = -3945.523887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.85185 -40.87544 -38.99323 -37.41604 -35.62387 -35.53760 -33.64691 -33.01098 -31.99240 -31.60241 -30.32649 -28.34885 -25.92138 -25.62864 -24.45822 -24.05306 -23.74400 -22.47424 -21.18875 -20.12018 -18.86094 -18.30539 -18.01513 -17.99996 -17.10378 -16.84176 -16.63216 -16.16737 -15.90400 -15.68731 -15.30919 -15.22621 -14.93359 -14.67793 -14.63297 -14.59078 -14.21418 -13.96326 -13.90270 -13.51965 -13.30266 -13.21801 -13.11932 -12.98977 -12.62693 -12.57962 -12.41339 -12.26855 -12.21263 -11.98545 -11.82573 -11.43592 -11.28929 -11.01482 -10.73504 -10.54595 -10.36024 -10.26336 -9.87952 -9.83563 -8.63001 -7.87206 -5.34835 0.20922 0.39750 1.47197 1.48837 1.56897 1.76318 2.28090 2.51140 2.94807 3.26618 3.32306 3.45869 3.66225 3.71020 3.76029 3.91118 4.01946 4.08268 4.09233 4.18296 4.25955 4.29860 4.43215 4.44887 4.55002 4.65980 4.67608 4.71681 4.75972 4.82499 4.90152 4.92009 4.94048 5.04444 5.11215 5.20662 5.22458 5.23043 5.26822 5.39362 5.46285 5.64639 5.69675 5.74461 5.82338 6.40966 6.70986 6.91018 7.07618 7.16771 7.36721 7.85341 8.38543 9.18455 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003278 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.430212 B = 8538.718030 C = 9168.551210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 H 0.117 0.883 4 C 0.523 3.477 5 O -0.568 6.568 6 N -0.696 5.696 7 C 0.196 3.804 8 C 0.076 3.924 9 O -0.573 6.573 10 C -0.125 4.125 11 C 0.183 3.817 12 N -0.605 5.605 13 C -0.267 4.267 14 H 0.059 0.941 15 C -0.041 4.041 16 N -0.928 5.928 17 Si 0.964 3.036 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.273 1.273 21 C 0.156 3.844 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.078 4.078 25 C -0.170 4.170 26 C 0.080 3.920 27 N -0.517 5.517 28 C 0.117 3.883 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.391 0.609 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.011 0.989 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.154 0.846 46 H 0.165 0.835 47 H 0.178 0.822 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -8.738 15.311 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 H 0.135 0.865 4 C 0.311 3.689 5 O -0.448 6.448 6 N -0.346 5.346 7 C 0.110 3.890 8 C -0.003 4.003 9 O -0.380 6.380 10 C -0.165 4.165 11 C 0.057 3.943 12 N -0.329 5.329 13 C -0.397 4.397 14 H 0.077 0.923 15 C -0.238 4.238 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.198 1.198 21 C 0.030 3.970 22 C -0.170 4.170 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.189 4.189 26 C -0.076 4.076 27 N -0.226 5.226 28 C -0.040 4.040 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.239 0.761 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.195 0.805 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.947 -9.539 15.412 18.789 hybrid contribution 0.439 1.182 -1.294 1.807 sum -4.508 -8.357 14.118 17.014 Atomic orbital electron populations 1.21733 0.90215 1.03076 1.03863 1.20246 0.99058 1.00346 0.88953 0.86528 1.20667 0.79191 0.84285 0.84795 1.90612 1.38863 1.28272 1.87038 1.45881 1.57436 1.26557 1.04742 1.20145 0.93460 0.90352 0.85068 1.22452 0.81976 0.95829 1.00067 1.86415 1.20727 1.35129 1.95693 1.22217 1.00191 0.98129 0.95946 1.20542 0.82770 0.91641 0.99323 1.44235 1.01850 1.61658 1.25146 1.19438 1.01949 1.05819 1.12491 0.92285 1.25757 0.99466 0.95941 1.02599 1.70121 1.27399 1.20206 1.39625 0.85331 0.78451 0.76730 0.80267 1.21181 1.22029 1.19780 1.20803 0.95338 0.91041 0.89789 1.22193 0.94866 0.98298 1.01651 1.20420 0.99702 0.95713 0.96486 1.21853 0.93998 1.01355 0.93188 1.22435 1.01514 0.95866 0.99128 1.23263 0.93411 0.93221 0.97701 1.67672 1.11788 1.39554 1.03549 1.22409 0.96585 0.91512 0.93475 0.90888 0.92305 0.89961 0.76070 0.92701 0.92610 0.76076 0.91866 0.90541 0.97244 0.92863 0.94010 0.97070 0.93743 0.90974 0.91789 0.82876 0.81695 0.80493 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.91 71.98 0.64 -1.75 16 2 C -0.06 -1.43 2.92 -12.28 -0.04 -1.46 16 3 H 0.12 2.30 7.93 -2.39 -0.02 2.28 16 4 C 0.52 15.17 6.44 87.66 0.56 15.73 16 5 O -0.57 -19.53 11.44 -3.02 -0.03 -19.56 16 6 N -0.70 -20.83 3.76 -422.80 -1.59 -22.42 16 7 C 0.20 6.36 0.44 3.63 0.00 6.36 16 8 C 0.08 2.13 5.54 71.98 0.40 2.52 16 9 O -0.57 -14.26 12.94 -148.98 -1.93 -16.18 16 10 C -0.13 -4.49 4.89 30.67 0.15 -4.34 16 11 C 0.18 8.23 5.00 86.36 0.43 8.66 16 12 N -0.61 -29.52 2.98 -699.08 -2.09 -31.60 16 13 C -0.27 -14.46 9.57 84.03 0.80 -13.66 16 14 H 0.06 3.19 7.87 -2.91 -0.02 3.17 16 15 C -0.04 -2.26 4.95 84.86 0.42 -1.84 16 16 N -0.93 -52.69 11.24 21.65 0.24 -52.45 16 17 Si 0.96 44.10 29.58 68.60 2.03 46.13 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.16 6.62 6.26 86.36 0.54 7.16 16 22 C -0.13 -4.69 4.74 30.67 0.15 -4.55 16 23 C -0.12 -2.84 4.40 -19.78 -0.09 -2.93 16 24 C -0.08 -1.54 9.81 22.47 0.22 -1.32 16 25 C -0.17 -2.94 10.11 22.36 0.23 -2.71 16 26 C 0.08 1.63 11.18 84.69 0.95 2.58 16 27 N -0.52 -13.71 10.36 -195.85 -2.03 -15.74 16 28 C 0.12 3.09 9.12 84.67 0.77 3.86 16 29 H 0.07 1.30 7.69 -2.38 -0.02 1.28 16 30 H 0.06 1.13 7.41 -2.39 -0.02 1.12 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.40 11.85 6.71 -92.71 -0.62 11.22 16 33 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.06 1.71 6.17 -2.39 -0.01 1.70 16 35 H 0.39 6.25 9.12 -74.06 -0.68 5.57 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.55 7.79 -2.39 -0.02 2.53 16 38 H 0.01 0.44 6.84 -2.39 -0.02 0.42 16 39 H 0.05 2.76 6.17 -2.39 -0.01 2.75 16 40 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.01 0.49 7.74 -2.39 -0.02 0.47 16 42 H 0.04 1.92 7.93 -2.39 -0.02 1.90 16 43 H 0.07 2.64 6.40 -2.39 -0.02 2.62 16 44 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.15 2.30 8.00 -2.91 -0.02 2.28 16 46 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.14 3.77 7.53 -2.91 -0.02 3.74 16 Total: -1.00 -68.86 376.22 0.44 -68.42 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.31 Total: 31.09 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.14 Total: 12.32 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -5.46 Total: -122.21 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.96 Total: -35.74 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.86 0.44 -68.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328558633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds