Wall clock time and date at job start Tue Mar 31 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.50703 * 109.46869 * 239.99857 * 2 1 3 5 5 O 1.21277 * 120.00189 * 240.00179 * 4 2 1 6 6 N 1.34780 * 119.99853 * 60.00357 * 4 2 1 7 7 C 1.46506 * 119.99852 * 174.88790 * 6 4 2 8 8 C 1.52997 * 109.49637 * 302.86948 * 7 6 4 9 9 O 1.42895 * 109.47280 * 300.68851 * 8 7 6 10 10 C 1.53038 * 109.49338 * 62.93627 * 7 6 4 11 11 C 1.53034 * 109.54205 * 58.58553 * 10 7 6 12 12 C 1.53202 * 109.31313 * 61.36086 * 11 10 7 13 13 N 1.46926 * 108.77466 * 305.36893 * 12 11 10 14 14 C 1.36941 * 120.62882 * 233.62891 * 13 12 11 15 15 H 1.07995 * 119.99662 * 31.70015 * 14 13 12 16 16 C 1.38807 * 119.99869 * 211.70108 * 14 13 12 17 17 N 1.31623 * 120.00040 * 11.03102 * 16 14 13 18 18 Si 1.86805 * 119.99831 * 191.03189 * 16 14 13 19 19 H 1.48499 * 109.46927 * 89.99874 * 18 16 14 20 20 H 1.48498 * 109.46914 * 210.00005 * 18 16 14 21 21 H 1.48498 * 109.47067 * 329.99851 * 18 16 14 22 22 C 1.46924 * 118.74173 * 53.60341 * 13 12 11 23 23 C 1.50702 * 109.47096 * 120.00142 * 2 1 3 24 24 C 1.38668 * 120.41894 * 239.99605 * 23 2 1 25 25 C 1.38630 * 118.42112 * 179.72467 * 24 23 2 26 26 C 1.38218 * 119.15944 * 0.02562 * 25 24 23 27 27 N 1.31856 * 120.76824 * 359.97438 * 26 25 24 28 28 C 1.31882 * 121.72207 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47345 * 59.99588 * 1 2 3 30 30 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47203 * 299.99869 * 1 2 3 32 32 H 0.96994 * 119.99852 * 354.88792 * 6 4 2 33 33 H 1.09004 * 109.47076 * 60.69169 * 8 7 6 34 34 H 1.09000 * 109.46769 * 180.68377 * 8 7 6 35 35 H 0.96699 * 114.00167 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.45477 * 178.60282 * 10 7 6 37 37 H 1.08997 * 109.46144 * 298.57659 * 10 7 6 38 38 H 1.09004 * 109.50182 * 181.31077 * 11 10 7 39 39 H 1.09000 * 109.49946 * 301.41117 * 11 10 7 40 40 H 1.09005 * 109.58408 * 65.15383 * 12 11 10 41 41 H 1.09000 * 109.58915 * 185.43528 * 12 11 10 42 42 H 0.97003 * 119.99810 * 180.02562 * 17 16 14 43 43 H 1.08994 * 109.58778 * 186.60408 * 22 13 12 44 44 H 1.09002 * 109.58377 * 66.18142 * 22 13 12 45 45 H 1.08002 * 120.78805 * 359.70353 * 24 23 2 46 46 H 1.07996 * 120.41620 * 179.97438 * 25 24 23 47 47 H 1.08013 * 119.61669 * 179.97438 * 26 25 24 48 48 H 1.07996 * 119.61475 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.2846 -0.8716 -3.6487 8 6 3.8113 -0.8123 -3.5672 9 8 4.2307 0.5505 -3.4735 10 6 1.8339 -2.3317 -3.7333 11 6 0.3055 -2.3936 -3.7810 12 6 -0.1926 -1.6606 -5.0306 13 7 0.3565 -0.2977 -5.0297 14 6 -0.4701 0.7875 -5.1501 15 1 -1.4727 0.7495 -4.7506 16 6 -0.0191 1.9362 -5.7855 17 7 1.1112 1.9149 -6.4596 18 14 -1.0165 3.5125 -5.6840 19 1 -0.5835 4.2967 -4.4996 20 1 -0.8007 4.3148 -6.9148 21 1 -2.4579 3.1789 -5.5569 22 6 1.8090 -0.1213 -4.8967 23 6 2.0323 -0.7104 1.2305 24 6 2.8301 -0.0450 2.1489 25 6 3.2644 -0.7367 3.2691 26 6 2.8908 -2.0574 3.4318 27 7 2.1308 -2.6585 2.5375 28 6 1.6994 -2.0317 1.4603 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.0897 0.4930 -2.5449 33 1 4.1496 -1.3580 -2.6863 34 1 4.2406 -1.2640 -4.4614 35 1 5.1894 0.6641 -3.4186 36 1 2.2440 -2.7866 -4.6350 37 1 2.1919 -2.8736 -2.8580 38 1 -0.0155 -3.4347 -3.8178 39 1 -0.1059 -1.9168 -2.8913 40 1 0.1435 -2.1893 -5.9227 41 1 -1.2817 -1.6180 -5.0196 42 1 1.4265 2.7178 -6.9033 43 1 2.0406 0.9390 -4.7961 44 1 2.3082 -0.5245 -5.7778 45 1 3.1069 0.9876 1.9950 46 1 3.8873 -0.2499 4.0048 47 1 3.2253 -2.6035 4.3016 48 1 1.0781 -2.5570 0.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484448552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:01 Heat of formation + Delta-G solvation = -52.319030 kcal Electronic energy + Delta-G solvation = -30730.500352 eV Core-core repulsion = 26784.922468 eV Total energy + Delta-G solvation = -3945.577884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79241 -40.82711 -38.95980 -37.37170 -35.58165 -35.34585 -34.13992 -33.03584 -31.99566 -31.47906 -30.21022 -27.30980 -26.63973 -25.92723 -24.45184 -24.02762 -23.69286 -22.22183 -21.06601 -20.04190 -18.81590 -18.25634 -18.15909 -18.00087 -17.17416 -16.80748 -16.56873 -16.12224 -15.82689 -15.73890 -15.27474 -15.09171 -14.83748 -14.79888 -14.52052 -14.41887 -14.12278 -14.10284 -13.92480 -13.56121 -13.43168 -13.16115 -13.03583 -12.84502 -12.73082 -12.54784 -12.40563 -12.27407 -12.18269 -11.93755 -11.66382 -11.46567 -11.19039 -11.02807 -10.73288 -10.52105 -10.35219 -10.28081 -9.85597 -9.75757 -8.58942 -7.81895 -5.33808 0.21665 0.40322 1.51031 1.52741 1.60632 1.78961 2.35873 2.54089 2.95931 3.33491 3.34095 3.46476 3.66443 3.71527 3.79131 4.00404 4.08685 4.11409 4.15858 4.23303 4.27208 4.30065 4.36351 4.42653 4.48366 4.62094 4.68648 4.79305 4.82123 4.86402 4.90803 4.91832 4.97182 5.00146 5.13922 5.20438 5.22567 5.22960 5.35373 5.39531 5.50752 5.67336 5.78867 5.80559 5.83120 6.45547 6.81571 6.91425 7.08485 7.19103 7.41352 7.87291 8.42670 9.23298 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.003895 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.079516 B = 7186.633231 C = 7593.394192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 H 0.119 0.881 4 C 0.519 3.481 5 O -0.571 6.571 6 N -0.685 5.685 7 C 0.162 3.838 8 C 0.075 3.925 9 O -0.577 6.577 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.140 3.860 13 N -0.602 5.602 14 C -0.261 4.261 15 H 0.069 0.931 16 C -0.040 4.040 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.281 1.281 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.195 3.805 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.169 4.169 26 C 0.080 3.920 27 N -0.517 5.517 28 C 0.114 3.886 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.404 0.596 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.387 0.613 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.011 0.989 41 H 0.056 0.944 42 H 0.248 0.752 43 H 0.071 0.929 44 H -0.001 1.001 45 H 0.156 0.844 46 H 0.168 0.832 47 H 0.178 0.822 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -3.321 16.764 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 H 0.137 0.863 4 C 0.306 3.694 5 O -0.452 6.452 6 N -0.334 5.334 7 C 0.073 3.927 8 C -0.004 4.004 9 O -0.383 6.383 10 C -0.153 4.153 11 C -0.154 4.154 12 C 0.015 3.985 13 N -0.325 5.325 14 C -0.391 4.391 15 H 0.087 0.913 16 C -0.236 4.236 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.208 1.208 20 H -0.229 1.229 21 H -0.194 1.194 22 C 0.069 3.931 23 C -0.120 4.120 24 C -0.102 4.102 25 C -0.188 4.188 26 C -0.077 4.077 27 N -0.226 5.226 28 C -0.042 4.042 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.239 0.761 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.236 0.764 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.017 0.983 45 H 0.173 0.827 46 H 0.185 0.815 47 H 0.195 0.805 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.566 -4.658 16.808 17.802 hybrid contribution 0.328 1.851 -0.967 2.114 sum 3.894 -2.807 15.841 16.552 Atomic orbital electron populations 1.21781 0.90812 1.02975 1.03892 1.20232 0.98648 1.00428 0.89096 0.86327 1.20704 0.79782 0.84071 0.84796 1.90593 1.40263 1.27262 1.87069 1.45792 1.46887 1.36262 1.04427 1.20986 0.90662 0.93941 0.87076 1.22465 0.94605 0.83275 1.00102 1.86527 1.28574 1.25949 1.97261 1.21694 0.97014 0.94742 1.01852 1.21784 0.94802 1.00008 0.98791 1.21082 0.97132 0.85522 0.94783 1.44198 1.02434 1.01075 1.84833 1.19433 0.97243 0.92407 1.29990 0.91340 1.25848 0.98620 1.02297 0.96881 1.70134 1.23612 1.28080 1.35749 0.85338 0.78892 0.80050 0.76543 1.20789 1.22875 1.19433 1.20588 0.83282 0.99232 0.90024 1.20387 0.99679 0.95569 0.96359 1.21842 0.94001 1.01333 0.93058 1.22438 1.01471 0.95780 0.99103 1.23277 0.93392 0.93327 0.97688 1.67670 1.11895 1.39547 1.03486 1.22396 0.96667 0.91684 0.93487 0.91335 0.92417 0.89654 0.76107 0.92344 0.93296 0.76442 0.92062 0.91008 0.90753 0.92613 0.97126 0.92554 0.94254 0.91077 0.98260 0.82655 0.81495 0.80462 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.90 71.98 0.64 -2.32 16 2 C -0.06 -1.51 2.93 -12.29 -0.04 -1.54 16 3 H 0.12 2.51 7.93 -2.39 -0.02 2.49 16 4 C 0.52 16.33 6.44 87.66 0.56 16.90 16 5 O -0.57 -20.57 11.40 -3.02 -0.03 -20.61 16 6 N -0.68 -23.62 3.96 -422.57 -1.67 -25.30 16 7 C 0.16 6.06 0.45 3.68 0.00 6.06 16 8 C 0.07 2.59 5.68 71.98 0.41 3.00 16 9 O -0.58 -19.84 12.98 -148.98 -1.93 -21.78 16 10 C -0.11 -4.01 4.52 30.62 0.14 -3.87 16 11 C -0.11 -3.90 5.93 30.67 0.18 -3.72 16 12 C 0.14 5.63 6.51 86.37 0.56 6.19 16 13 N -0.60 -28.32 2.85 -699.09 -1.99 -30.31 16 14 C -0.26 -13.29 9.58 84.03 0.80 -12.49 16 15 H 0.07 3.39 7.85 -2.91 -0.02 3.37 16 16 C -0.04 -2.12 5.04 84.86 0.43 -1.69 16 17 N -0.93 -52.94 11.10 21.65 0.24 -52.70 16 18 Si 0.96 42.63 29.57 68.60 2.03 44.66 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.20 9.03 3.75 86.36 0.32 9.36 16 23 C -0.12 -2.87 4.40 -19.77 -0.09 -2.96 16 24 C -0.08 -1.50 9.81 22.47 0.22 -1.28 16 25 C -0.17 -2.86 10.11 22.36 0.23 -2.64 16 26 C 0.08 1.63 11.18 84.68 0.95 2.58 16 27 N -0.52 -14.22 10.36 -195.84 -2.03 -16.25 16 28 C 0.11 3.19 9.13 84.67 0.77 3.96 16 29 H 0.07 1.57 7.46 -2.39 -0.02 1.55 16 30 H 0.06 1.30 7.40 -2.39 -0.02 1.28 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.40 14.68 7.71 -92.71 -0.71 13.96 16 33 H 0.06 2.05 6.16 -2.39 -0.01 2.04 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.39 9.36 9.12 -74.06 -0.68 8.69 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.07 2.55 6.25 -2.39 -0.01 2.54 16 38 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.06 1.92 7.53 -2.39 -0.02 1.90 16 40 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.06 2.20 7.94 -2.39 -0.02 2.18 16 42 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.07 3.79 5.88 -2.39 -0.01 3.77 16 44 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.16 2.23 8.00 -2.91 -0.02 2.20 16 46 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.18 2.46 8.06 -2.90 -0.02 2.43 16 48 H 0.14 3.99 7.53 -2.91 -0.02 3.97 16 Total: -1.00 -67.46 377.97 0.30 -67.16 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.41 Total: 39.58 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.10 Total: 15.54 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -5.45 Total: -124.55 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.97 Total: -42.39 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.46 0.30 -67.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.846 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds