Wall clock time and date at job start Tue Mar 31 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46819 * 2 1 4 4 C 1.50694 * 109.47530 * 119.99912 * 2 1 3 5 5 O 1.21274 * 120.00239 * 120.00239 * 4 2 1 6 6 N 1.34784 * 119.99788 * 300.00362 * 4 2 1 7 7 C 1.46500 * 119.99956 * 185.24362 * 6 4 2 8 8 C 1.53005 * 109.49609 * 54.58554 * 7 6 4 9 9 O 1.42902 * 109.46936 * 54.64321 * 8 7 6 10 10 C 1.53037 * 109.49809 * 294.52585 * 7 6 4 11 11 C 1.53043 * 109.53522 * 301.37761 * 10 7 6 12 12 C 1.53186 * 109.31313 * 298.63522 * 11 10 7 13 13 N 1.46928 * 108.77566 * 54.63732 * 12 11 10 14 14 C 1.36932 * 120.63259 * 126.41309 * 13 12 11 15 15 H 1.08000 * 120.00227 * 210.91228 * 14 13 12 16 16 C 1.38816 * 120.00248 * 30.91010 * 14 13 12 17 17 N 1.31616 * 119.99816 * 12.21361 * 16 14 13 18 18 Si 1.86797 * 120.00215 * 192.21145 * 16 14 13 19 19 H 1.48507 * 109.46985 * 60.00098 * 18 16 14 20 20 H 1.48503 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47197 * 300.00442 * 18 16 14 22 22 C 1.46931 * 118.73568 * 306.38748 * 13 12 11 23 23 C 1.50700 * 109.47030 * 240.00221 * 2 1 3 24 24 C 1.38670 * 120.41728 * 119.99656 * 23 2 1 25 25 C 1.38627 * 118.41899 * 179.97438 * 24 23 2 26 26 C 1.38231 * 119.16291 * 359.97438 * 25 24 23 27 27 N 1.31858 * 120.75887 * 0.02562 * 26 25 24 28 28 C 1.31881 * 121.72630 * 359.70165 * 27 26 25 29 29 H 1.09000 * 109.47115 * 60.00116 * 1 2 3 30 30 H 1.09001 * 109.46428 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47252 * 299.99816 * 1 2 3 32 32 H 0.96999 * 120.00190 * 5.24185 * 6 4 2 33 33 H 1.09005 * 109.47031 * 174.63831 * 8 7 6 34 34 H 1.08994 * 109.47374 * 294.63899 * 8 7 6 35 35 H 0.96704 * 113.99986 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46474 * 61.40003 * 10 7 6 37 37 H 1.09001 * 109.46081 * 181.36216 * 10 7 6 38 38 H 1.08996 * 109.49580 * 58.59185 * 11 10 7 39 39 H 1.09005 * 109.49427 * 178.65197 * 11 10 7 40 40 H 1.09001 * 109.58507 * 174.41944 * 12 11 10 41 41 H 1.09004 * 109.59092 * 294.70368 * 12 11 10 42 42 H 0.97001 * 120.00423 * 179.97438 * 17 16 14 43 43 H 1.08992 * 109.58782 * 293.81914 * 22 13 12 44 44 H 1.09003 * 109.58008 * 173.39421 * 22 13 12 45 45 H 1.08003 * 120.79441 * 359.97438 * 24 23 2 46 46 H 1.08000 * 120.42033 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.61941 * 180.02562 * 26 25 24 48 48 H 1.08005 * 119.61472 * 180.31436 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6963 1.1191 6 7 1.7068 -0.2499 2.4546 7 6 2.2871 -0.8695 3.6485 8 6 3.8130 -0.8638 3.5364 9 8 4.2683 0.4701 3.3007 10 6 1.7893 -2.3116 3.7688 11 6 0.2609 -2.3205 3.8479 12 6 -0.1864 -1.5492 5.0935 13 7 0.4081 -0.2060 5.0568 14 6 -0.3785 0.9086 5.1747 15 1 -0.0937 1.8253 4.6798 16 6 -1.5420 0.8603 5.9301 17 7 -1.7696 -0.1651 6.7232 18 14 -2.7848 2.2507 5.8212 19 1 -3.2697 2.3727 4.4229 20 1 -3.9317 1.9609 6.7189 21 1 -2.1411 3.5234 6.2347 22 6 1.8629 -0.0817 4.8919 23 6 2.0323 -0.7104 -1.2305 24 6 2.8300 -0.0447 -2.1490 25 6 3.2695 -0.7382 -3.2660 26 6 2.9010 -2.0609 -3.4257 27 7 2.1409 -2.6619 -2.5314 28 6 1.7091 -2.0350 -1.4545 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.0883 0.4918 2.5450 33 1 4.2469 -1.2371 4.4641 34 1 4.1190 -1.5037 2.7089 35 1 5.2286 0.5493 3.2191 36 1 2.1111 -2.8809 2.8967 37 1 2.2022 -2.7644 4.6702 38 1 -0.1522 -1.8457 2.9580 39 1 -0.0942 -3.3493 3.9095 40 1 -1.2733 -1.4675 5.1020 41 1 0.1476 -2.0746 5.9883 42 1 -2.5825 -0.1988 7.2514 43 1 2.3661 -0.4860 5.7701 44 1 2.1279 0.9683 4.7673 45 1 3.1025 0.9894 -1.9977 46 1 3.8919 -0.2513 -4.0021 47 1 3.2395 -2.6083 -4.2930 48 1 1.0923 -2.5619 -0.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484448556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:10 Heat of formation + Delta-G solvation = -30.651672 kcal Electronic energy + Delta-G solvation = -30540.687193 eV Core-core repulsion = 26596.048876 eV Total energy + Delta-G solvation = -3944.638317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.69482 -39.71655 -37.59820 -36.05222 -34.53569 -33.87954 -32.34031 -32.05171 -30.52387 -30.21313 -29.12347 -25.45576 -25.09796 -24.94774 -23.57406 -22.78609 -22.15440 -20.85333 -19.80882 -18.67181 -17.24118 -17.11943 -16.95856 -16.74783 -16.11424 -15.53666 -15.03548 -14.87843 -14.65426 -14.24809 -14.06801 -13.82532 -13.74054 -13.48171 -13.24222 -13.11323 -12.89450 -12.79180 -12.57181 -12.43190 -12.15587 -11.88555 -11.56421 -11.44611 -11.34895 -11.15750 -11.03056 -10.76561 -10.46183 -10.19013 -10.12104 -9.89689 -9.81185 -9.68343 -9.53838 -9.45080 -9.05033 -8.93408 -8.52641 -8.45577 -6.69132 -5.83999 -3.32574 1.08698 1.25614 2.98523 3.33376 3.39322 3.39942 3.50925 3.88612 4.34513 4.42033 4.49736 4.63967 4.69199 4.88065 4.94331 5.07868 5.14189 5.22422 5.31674 5.34693 5.45662 5.55126 5.58899 5.68053 5.69712 5.78454 5.78771 5.81659 5.95307 6.03048 6.03499 6.11122 6.27401 6.27969 6.39926 6.48548 6.64517 6.67226 6.70315 6.79696 6.89117 7.10317 7.37263 7.65257 7.72917 7.84041 7.97329 8.06175 8.40344 8.64813 9.15712 9.76691 10.35011 11.23595 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003725 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.338652 B = 7514.812117 C = 8170.978708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.548 6.548 6 N -0.685 5.685 7 C 0.168 3.832 8 C 0.065 3.935 9 O -0.565 6.565 10 C -0.118 4.118 11 C -0.136 4.136 12 C 0.170 3.830 13 N -0.588 5.588 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.148 3.852 23 C -0.108 4.108 24 C -0.071 4.071 25 C -0.178 4.178 26 C 0.090 3.910 27 N -0.487 5.487 28 C 0.135 3.865 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.407 0.593 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.369 0.631 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.017 0.983 42 H 0.255 0.745 43 H 0.030 0.970 44 H 0.066 0.934 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.151 0.849 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.219 -0.070 -14.958 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 H 0.121 0.879 4 C 0.307 3.693 5 O -0.427 6.427 6 N -0.335 5.335 7 C 0.080 3.920 8 C -0.014 4.014 9 O -0.369 6.369 10 C -0.157 4.157 11 C -0.175 4.175 12 C 0.045 3.955 13 N -0.311 5.311 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.544 5.544 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.020 3.980 23 C -0.111 4.111 24 C -0.097 4.097 25 C -0.198 4.198 26 C -0.066 4.066 27 N -0.196 5.196 28 C -0.022 4.022 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.242 0.758 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.215 0.785 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.169 0.831 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.668 -1.531 -14.968 17.364 hybrid contribution 0.004 1.820 0.288 1.843 sum 8.672 0.290 -14.679 17.052 Atomic orbital electron populations 1.21825 0.91651 1.03303 1.03328 1.20253 0.97969 1.00174 0.90763 0.87872 1.20164 0.80370 0.84342 0.84424 1.90611 1.39193 1.26125 1.86745 1.45755 1.46799 1.36609 1.04301 1.20954 0.89426 0.94559 0.87087 1.22663 0.94995 0.83897 0.99863 1.86500 1.26284 1.28537 1.95581 1.21743 0.97575 0.94782 1.01595 1.22105 0.94180 0.99510 1.01736 1.20810 0.99718 0.83636 0.91339 1.44027 0.99637 1.02637 1.84766 1.19085 1.03547 0.91199 1.24969 0.91806 1.25141 1.00391 0.97554 0.96020 1.69980 1.26480 1.30854 1.27119 0.86371 0.80961 0.81900 0.77459 1.20949 1.21661 1.20868 1.21102 0.86916 0.98132 0.91809 1.20373 0.98878 0.95855 0.95969 1.21457 0.94828 1.00128 0.93312 1.22046 1.02360 0.96344 0.99068 1.22730 0.94079 0.92316 0.97510 1.67717 1.10496 1.38605 1.02733 1.22527 0.95590 0.90949 0.93094 0.91579 0.91762 0.90651 0.75753 0.93685 0.91706 0.78550 0.91377 0.92208 0.92746 0.93342 0.89524 0.96500 0.93495 0.95220 0.91579 0.85051 0.85053 0.83139 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.91 37.16 0.33 -1.30 16 2 C -0.07 -0.85 2.93 -92.93 -0.27 -1.12 16 3 H 0.10 1.11 7.93 -51.92 -0.41 0.70 16 4 C 0.52 8.00 6.44 -10.99 -0.07 7.93 16 5 O -0.55 -9.68 11.43 5.56 0.06 -9.62 16 6 N -0.68 -11.08 3.87 -47.50 -0.18 -11.27 16 7 C 0.17 2.89 0.45 -131.70 -0.06 2.83 16 8 C 0.06 1.00 5.53 37.16 0.21 1.21 16 9 O -0.57 -8.23 13.08 -35.23 -0.46 -8.69 16 10 C -0.12 -2.09 4.56 -26.69 -0.12 -2.21 16 11 C -0.14 -2.59 5.93 -26.61 -0.16 -2.74 16 12 C 0.17 3.90 5.26 -3.71 -0.02 3.88 16 13 N -0.59 -13.66 2.82 -172.32 -0.49 -14.14 16 14 C -0.26 -6.57 9.58 -15.06 -0.14 -6.72 16 15 H 0.06 1.58 7.86 -52.49 -0.41 1.17 16 16 C 0.01 0.22 5.01 -17.43 -0.09 0.13 16 17 N -0.90 -25.11 11.11 55.49 0.62 -24.49 16 18 Si 0.90 20.71 29.57 -169.99 -5.03 15.68 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 C 0.15 2.97 5.08 -3.71 -0.02 2.95 16 23 C -0.11 -1.37 4.41 -104.48 -0.46 -1.83 16 24 C -0.07 -0.77 9.81 -39.28 -0.39 -1.15 16 25 C -0.18 -1.75 10.11 -39.44 -0.40 -2.15 16 26 C 0.09 1.01 11.18 -17.54 -0.20 0.82 16 27 N -0.49 -6.86 10.36 -13.25 -0.14 -7.00 16 28 C 0.14 1.91 9.11 -17.55 -0.16 1.75 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.76 7.43 -51.93 -0.39 0.38 16 31 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 32 H 0.41 6.76 7.68 -40.82 -0.31 6.45 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.07 6.16 -51.93 -0.32 0.75 16 35 H 0.37 3.70 9.12 45.56 0.42 4.11 16 36 H 0.07 1.23 6.44 -51.93 -0.33 0.89 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 2.23 6.12 -51.93 -0.32 1.91 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 45 H 0.13 1.11 8.00 -52.48 -0.42 0.69 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.15 2.17 7.53 -52.48 -0.40 1.77 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -30.97 378.19 -8.53 -39.50 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.60 Total: 12.07 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.02 Total: 2.26 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.19 Total: -56.90 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.40 Total: -18.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.97 -8.53 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.845 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds