Wall clock time and date at job start Tue Mar 31 2020 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46819 * 2 1 4 4 C 1.50694 * 109.47530 * 119.99912 * 2 1 3 5 5 O 1.21274 * 120.00239 * 120.00239 * 4 2 1 6 6 N 1.34784 * 119.99788 * 300.00362 * 4 2 1 7 7 C 1.46500 * 119.99956 * 185.24362 * 6 4 2 8 8 C 1.53005 * 109.49609 * 54.58554 * 7 6 4 9 9 O 1.42902 * 109.46936 * 54.64321 * 8 7 6 10 10 C 1.53037 * 109.49809 * 294.52585 * 7 6 4 11 11 C 1.53043 * 109.53522 * 301.37761 * 10 7 6 12 12 C 1.53186 * 109.31313 * 298.63522 * 11 10 7 13 13 N 1.46928 * 108.77566 * 54.63732 * 12 11 10 14 14 C 1.36932 * 120.63259 * 126.41309 * 13 12 11 15 15 H 1.08000 * 120.00227 * 210.91228 * 14 13 12 16 16 C 1.38816 * 120.00248 * 30.91010 * 14 13 12 17 17 N 1.31616 * 119.99816 * 12.21361 * 16 14 13 18 18 Si 1.86797 * 120.00215 * 192.21145 * 16 14 13 19 19 H 1.48507 * 109.46985 * 60.00098 * 18 16 14 20 20 H 1.48503 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47197 * 300.00442 * 18 16 14 22 22 C 1.46931 * 118.73568 * 306.38748 * 13 12 11 23 23 C 1.50700 * 109.47030 * 240.00221 * 2 1 3 24 24 C 1.38670 * 120.41728 * 119.99656 * 23 2 1 25 25 C 1.38627 * 118.41899 * 179.97438 * 24 23 2 26 26 C 1.38231 * 119.16291 * 359.97438 * 25 24 23 27 27 N 1.31858 * 120.75887 * 0.02562 * 26 25 24 28 28 C 1.31881 * 121.72630 * 359.70165 * 27 26 25 29 29 H 1.09000 * 109.47115 * 60.00116 * 1 2 3 30 30 H 1.09001 * 109.46428 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47252 * 299.99816 * 1 2 3 32 32 H 0.96999 * 120.00190 * 5.24185 * 6 4 2 33 33 H 1.09005 * 109.47031 * 174.63831 * 8 7 6 34 34 H 1.08994 * 109.47374 * 294.63899 * 8 7 6 35 35 H 0.96704 * 113.99986 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46474 * 61.40003 * 10 7 6 37 37 H 1.09001 * 109.46081 * 181.36216 * 10 7 6 38 38 H 1.08996 * 109.49580 * 58.59185 * 11 10 7 39 39 H 1.09005 * 109.49427 * 178.65197 * 11 10 7 40 40 H 1.09001 * 109.58507 * 174.41944 * 12 11 10 41 41 H 1.09004 * 109.59092 * 294.70368 * 12 11 10 42 42 H 0.97001 * 120.00423 * 179.97438 * 17 16 14 43 43 H 1.08992 * 109.58782 * 293.81914 * 22 13 12 44 44 H 1.09003 * 109.58008 * 173.39421 * 22 13 12 45 45 H 1.08003 * 120.79441 * 359.97438 * 24 23 2 46 46 H 1.08000 * 120.42033 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.61941 * 180.02562 * 26 25 24 48 48 H 1.08005 * 119.61472 * 180.31436 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6963 1.1191 6 7 1.7068 -0.2499 2.4546 7 6 2.2871 -0.8695 3.6485 8 6 3.8130 -0.8638 3.5364 9 8 4.2683 0.4701 3.3007 10 6 1.7893 -2.3116 3.7688 11 6 0.2609 -2.3205 3.8479 12 6 -0.1864 -1.5492 5.0935 13 7 0.4081 -0.2060 5.0568 14 6 -0.3785 0.9086 5.1747 15 1 -0.0937 1.8253 4.6798 16 6 -1.5420 0.8603 5.9301 17 7 -1.7696 -0.1651 6.7232 18 14 -2.7848 2.2507 5.8212 19 1 -3.2697 2.3727 4.4229 20 1 -3.9317 1.9609 6.7189 21 1 -2.1411 3.5234 6.2347 22 6 1.8629 -0.0817 4.8919 23 6 2.0323 -0.7104 -1.2305 24 6 2.8300 -0.0447 -2.1490 25 6 3.2695 -0.7382 -3.2660 26 6 2.9010 -2.0609 -3.4257 27 7 2.1409 -2.6619 -2.5314 28 6 1.7091 -2.0350 -1.4545 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.0883 0.4918 2.5450 33 1 4.2469 -1.2371 4.4641 34 1 4.1190 -1.5037 2.7089 35 1 5.2286 0.5493 3.2191 36 1 2.1111 -2.8809 2.8967 37 1 2.2022 -2.7644 4.6702 38 1 -0.1522 -1.8457 2.9580 39 1 -0.0942 -3.3493 3.9095 40 1 -1.2733 -1.4675 5.1020 41 1 0.1476 -2.0746 5.9883 42 1 -2.5825 -0.1988 7.2514 43 1 2.3661 -0.4860 5.7701 44 1 2.1279 0.9683 4.7673 45 1 3.1025 0.9894 -1.9977 46 1 3.8919 -0.2513 -4.0021 47 1 3.2395 -2.6083 -4.2930 48 1 1.0923 -2.5619 -0.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484448556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:08 Heat of formation + Delta-G solvation = -52.036992 kcal Electronic energy + Delta-G solvation = -30541.614530 eV Core-core repulsion = 26596.048876 eV Total energy + Delta-G solvation = -3945.565654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.80177 -40.83882 -38.97841 -37.38325 -35.58602 -35.43726 -33.81875 -33.00816 -32.31964 -31.52901 -30.20820 -27.28050 -26.58630 -25.93211 -24.45364 -24.01919 -23.68957 -22.36215 -21.09738 -20.04850 -18.65898 -18.32353 -18.14205 -18.00169 -17.10379 -16.89397 -16.62944 -16.19291 -15.84275 -15.73492 -15.29444 -15.10598 -14.83599 -14.74470 -14.51146 -14.46686 -14.20457 -14.09164 -13.91862 -13.51269 -13.40448 -13.18687 -13.11030 -12.85750 -12.76246 -12.47930 -12.40766 -12.26494 -12.21824 -11.96342 -11.74819 -11.47815 -11.20472 -11.02198 -10.72750 -10.51859 -10.34681 -10.27630 -9.85770 -9.77790 -8.61804 -7.83209 -5.33963 0.21613 0.41000 1.51619 1.52462 1.58776 1.79313 2.32944 2.53402 2.95694 3.31087 3.33861 3.46500 3.65199 3.70464 3.77681 3.97177 4.06174 4.09869 4.12072 4.20658 4.26538 4.27887 4.36823 4.42609 4.54894 4.61878 4.68564 4.77165 4.80147 4.87973 4.89608 4.91576 4.94417 5.01982 5.08220 5.19730 5.20787 5.22893 5.29372 5.39362 5.55290 5.67105 5.73254 5.80308 5.83457 6.42616 6.78599 6.91522 7.08910 7.17908 7.41233 7.85543 8.40182 9.22615 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003725 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.338652 B = 7514.812117 C = 8170.978708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 H 0.125 0.875 4 C 0.521 3.479 5 O -0.571 6.571 6 N -0.687 5.687 7 C 0.172 3.828 8 C 0.076 3.924 9 O -0.575 6.575 10 C -0.112 4.112 11 C -0.123 4.123 12 C 0.181 3.819 13 N -0.599 5.599 14 C -0.259 4.259 15 H 0.072 0.928 16 C -0.045 4.045 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.301 1.301 21 H -0.277 1.277 22 C 0.153 3.847 23 C -0.118 4.118 24 C -0.074 4.074 25 C -0.168 4.168 26 C 0.079 3.921 27 N -0.519 5.519 28 C 0.112 3.888 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.405 0.595 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.391 0.609 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.055 0.945 41 H -0.006 1.006 42 H 0.248 0.752 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.160 0.840 46 H 0.169 0.831 47 H 0.177 0.823 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.737 1.589 -17.271 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 H 0.143 0.857 4 C 0.309 3.691 5 O -0.451 6.451 6 N -0.336 5.336 7 C 0.084 3.916 8 C -0.003 4.003 9 O -0.382 6.382 10 C -0.150 4.150 11 C -0.162 4.162 12 C 0.056 3.944 13 N -0.322 5.322 14 C -0.389 4.389 15 H 0.090 0.910 16 C -0.241 4.241 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.203 1.203 22 C 0.027 3.973 23 C -0.121 4.121 24 C -0.099 4.099 25 C -0.188 4.188 26 C -0.078 4.078 27 N -0.228 5.228 28 C -0.044 4.044 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.012 0.988 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.177 0.823 46 H 0.186 0.814 47 H 0.194 0.806 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.225 0.141 -17.305 20.100 hybrid contribution -0.368 1.295 0.950 1.648 sum 9.857 1.436 -16.355 19.149 Atomic orbital electron populations 1.21789 0.91197 1.02735 1.03916 1.20221 0.98231 1.00697 0.89035 0.85695 1.20665 0.79665 0.83998 0.84813 1.90602 1.40253 1.27179 1.87060 1.45741 1.46906 1.36565 1.04398 1.20764 0.90997 0.93506 0.86338 1.22435 0.93368 0.84362 1.00164 1.86443 1.28499 1.27727 1.95562 1.21667 0.96218 0.95392 1.01735 1.21915 0.95385 0.99447 0.99419 1.20559 0.97776 0.83988 0.92125 1.44175 1.00979 1.02206 1.84845 1.19440 1.03611 0.91903 1.23913 0.91019 1.25855 1.02322 0.99719 0.96192 1.70148 1.26691 1.32820 1.28445 0.85378 0.78406 0.79363 0.77466 1.19918 1.22742 1.20275 1.21093 0.84894 0.98351 0.92952 1.20397 0.99718 0.95405 0.96550 1.21851 0.93772 1.01417 0.92909 1.22453 1.01473 0.95654 0.99192 1.23282 0.93385 0.93455 0.97636 1.67659 1.11856 1.39807 1.03482 1.22375 0.96696 0.91867 0.93468 0.89616 0.92971 0.91311 0.75987 0.92516 0.92368 0.76064 0.91324 0.91822 0.93018 0.92165 0.92656 0.98801 0.94258 0.95878 0.91977 0.82284 0.81393 0.80556 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.91 71.98 0.64 -2.36 16 2 C -0.06 -1.37 2.93 -12.29 -0.04 -1.41 16 3 H 0.13 2.30 7.93 -2.38 -0.02 2.28 16 4 C 0.52 15.46 6.44 87.65 0.56 16.03 16 5 O -0.57 -19.78 11.43 -3.01 -0.03 -19.82 16 6 N -0.69 -21.61 3.87 -422.58 -1.64 -23.24 16 7 C 0.17 5.80 0.45 3.68 0.00 5.81 16 8 C 0.08 2.22 5.53 71.98 0.40 2.62 16 9 O -0.58 -15.47 13.08 -148.98 -1.95 -17.42 16 10 C -0.11 -3.90 4.56 30.62 0.14 -3.76 16 11 C -0.12 -4.70 5.93 30.67 0.18 -4.52 16 12 C 0.18 8.52 5.26 86.36 0.45 8.97 16 13 N -0.60 -28.12 2.82 -699.10 -1.97 -30.10 16 14 C -0.26 -13.20 9.58 84.04 0.80 -12.39 16 15 H 0.07 3.49 7.86 -2.91 -0.02 3.47 16 16 C -0.05 -2.40 5.01 84.86 0.43 -1.98 16 17 N -0.94 -53.64 11.11 21.65 0.24 -53.40 16 18 Si 0.97 42.86 29.57 68.60 2.03 44.89 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.15 6.12 5.08 86.36 0.44 6.56 16 23 C -0.12 -2.79 4.41 -19.78 -0.09 -2.88 16 24 C -0.07 -1.34 9.81 22.47 0.22 -1.12 16 25 C -0.17 -2.71 10.11 22.36 0.23 -2.49 16 26 C 0.08 1.59 11.18 84.69 0.95 2.54 16 27 N -0.52 -14.33 10.36 -195.84 -2.03 -16.36 16 28 C 0.11 3.15 9.11 84.67 0.77 3.92 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.24 7.43 -2.39 -0.02 1.22 16 31 H 0.07 1.57 7.45 -2.39 -0.02 1.55 16 32 H 0.40 13.09 7.68 -92.71 -0.71 12.38 16 33 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.82 6.16 -2.39 -0.01 1.81 16 35 H 0.39 6.77 9.12 -74.05 -0.68 6.10 16 36 H 0.07 2.44 6.44 -2.39 -0.02 2.42 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.00 7.53 -2.39 -0.02 1.99 16 39 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.06 2.95 6.12 -2.39 -0.01 2.94 16 41 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 42 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 2.51 7.79 -2.39 -0.02 2.50 16 45 H 0.16 1.96 8.00 -2.91 -0.02 1.93 16 46 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 48 H 0.13 4.00 7.53 -2.91 -0.02 3.97 16 Total: -1.00 -67.96 378.19 0.34 -67.62 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.40 Total: 34.28 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.09 Total: 13.55 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.40 Total: -123.11 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.98 Total: -37.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.96 0.34 -67.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.583 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds