Wall clock time and date at job start Tue Mar 31 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 C 1.50699 * 109.47357 * 239.99642 * 2 1 3 5 5 O 1.21276 * 120.00115 * 240.00256 * 4 2 1 6 6 N 1.34780 * 119.99710 * 59.99861 * 4 2 1 7 7 C 1.46498 * 120.00014 * 174.86641 * 6 4 2 8 8 C 1.53006 * 109.49562 * 63.46466 * 7 6 4 9 9 O 1.42900 * 109.46950 * 54.11636 * 8 7 6 10 10 C 1.53038 * 109.50018 * 303.40562 * 7 6 4 11 11 C 1.53043 * 109.53667 * 301.41053 * 10 7 6 12 12 C 1.53192 * 109.31232 * 298.63839 * 11 10 7 13 13 N 1.46915 * 108.77800 * 54.63249 * 12 11 10 14 14 C 1.36941 * 120.63562 * 126.41423 * 13 12 11 15 15 H 1.07998 * 119.99497 * 323.79215 * 14 13 12 16 16 C 1.38813 * 120.00066 * 143.78450 * 14 13 12 17 17 N 1.31619 * 120.00062 * 2.36239 * 16 14 13 18 18 Si 1.86805 * 119.99574 * 182.36242 * 16 14 13 19 19 H 1.48502 * 109.47197 * 60.00105 * 18 16 14 20 20 H 1.48500 * 109.46689 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47239 * 300.00053 * 18 16 14 22 22 C 1.46996 * 118.75582 * 306.39184 * 13 12 11 23 23 C 1.50701 * 109.47069 * 119.99736 * 2 1 3 24 24 C 1.38676 * 120.41846 * 239.97854 * 23 2 1 25 25 C 1.38630 * 118.42088 * 180.02562 * 24 23 2 26 26 C 1.38230 * 119.15993 * 359.97438 * 25 24 23 27 27 N 1.31860 * 120.76470 * 0.02562 * 26 25 24 28 28 C 1.31879 * 121.72656 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47199 * 299.99876 * 1 2 3 30 30 H 1.08992 * 109.47046 * 60.00207 * 1 2 3 31 31 H 1.08999 * 109.46854 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99982 * 354.87132 * 6 4 2 33 33 H 1.08997 * 109.46820 * 174.11507 * 8 7 6 34 34 H 1.08996 * 109.47138 * 294.11786 * 8 7 6 35 35 H 0.96696 * 113.99974 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46089 * 61.42775 * 10 7 6 37 37 H 1.08996 * 109.46326 * 181.39233 * 10 7 6 38 38 H 1.09002 * 109.49474 * 58.58838 * 11 10 7 39 39 H 1.08996 * 109.50154 * 178.64833 * 11 10 7 40 40 H 1.09003 * 109.58212 * 174.42189 * 12 11 10 41 41 H 1.08996 * 109.58038 * 294.69835 * 12 11 10 42 42 H 0.97000 * 119.99376 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.58300 * 293.82946 * 22 13 12 44 44 H 1.08997 * 109.63278 * 173.38118 * 22 13 12 45 45 H 1.07997 * 120.78880 * 0.02562 * 24 23 2 46 46 H 1.07990 * 120.42138 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.61556 * 180.02562 * 26 25 24 48 48 H 1.07999 * 119.62103 * 180.28505 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.2851 -0.8713 -3.6485 8 6 1.8246 -2.3275 -3.7404 9 8 0.3976 -2.3801 -3.6860 10 6 3.8122 -0.8233 -3.5606 11 6 4.2721 0.6310 -3.4348 12 6 3.8347 1.4101 -4.6791 13 7 2.3848 1.2487 -4.8526 14 6 1.5702 2.3429 -4.9729 15 1 1.7820 3.2384 -4.4075 16 6 0.4725 2.3011 -5.8215 17 7 0.1876 1.1948 -6.4750 18 14 -0.6004 3.8153 -6.0358 19 1 0.2209 4.9329 -6.5664 20 1 -1.6993 3.5125 -6.9876 21 1 -1.1762 4.2038 -4.7232 22 6 1.8246 -0.1097 -4.8953 23 6 2.0323 -0.7104 1.2305 24 6 2.8305 -0.0449 2.1488 25 6 3.2699 -0.7384 3.2658 26 6 2.9001 -2.0606 3.4263 27 7 2.1397 -2.6615 2.5323 28 6 1.7034 -2.0331 1.4581 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.0895 0.4927 -2.5450 33 1 2.1684 -2.7587 -4.6806 34 1 2.2410 -2.8936 -2.9073 35 1 0.0346 -3.2747 -3.7396 36 1 4.1436 -1.3857 -2.6877 37 1 4.2418 -1.2634 -4.4605 38 1 3.8231 1.0791 -2.5484 39 1 5.3582 0.6629 -3.3481 40 1 4.0720 2.4663 -4.5509 41 1 4.3551 1.0223 -5.5547 42 1 -0.5793 1.1658 -7.0683 43 1 2.1792 -0.6232 -5.7890 44 1 0.7360 -0.0566 -4.9097 45 1 3.1032 0.9890 1.9973 46 1 3.8933 -0.2518 4.0013 47 1 3.2380 -2.6077 4.2940 48 1 1.0785 -2.5571 0.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484448558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:12 Heat of formation + Delta-G solvation = -51.807223 kcal Electronic energy + Delta-G solvation = -30698.218887 eV Core-core repulsion = 26752.663196 eV Total energy + Delta-G solvation = -3945.555691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.77558 -40.81488 -38.93030 -37.33827 -35.57952 -35.32625 -34.13071 -33.02868 -31.98282 -31.47743 -30.21865 -27.30543 -26.60140 -25.92055 -24.44875 -24.01944 -23.67165 -22.21007 -21.07542 -20.02614 -18.81691 -18.23343 -18.10913 -17.99065 -17.22511 -16.77676 -16.55796 -16.04957 -15.88787 -15.74417 -15.26338 -15.06428 -14.78618 -14.73972 -14.61040 -14.48375 -14.09298 -13.96146 -13.91224 -13.52368 -13.47493 -13.19148 -13.01578 -12.81469 -12.67773 -12.53957 -12.42908 -12.29922 -12.21838 -11.94766 -11.66443 -11.46349 -11.20918 -10.99346 -10.73056 -10.49754 -10.35073 -10.25812 -9.85015 -9.73203 -8.50749 -7.81798 -5.39111 0.21923 0.40785 1.51466 1.53254 1.59163 1.81101 2.37599 2.53231 2.96309 3.34299 3.37540 3.46712 3.68976 3.71926 3.79216 4.00681 4.09176 4.12218 4.15640 4.23923 4.25936 4.31290 4.39041 4.43340 4.50002 4.64274 4.68880 4.80234 4.83240 4.86207 4.91344 4.91864 4.97416 5.00877 5.13547 5.20566 5.22519 5.23112 5.34996 5.39871 5.49934 5.68822 5.82139 5.83624 5.84502 6.49852 6.83739 6.94093 7.08546 7.21338 7.43767 7.86981 8.44218 9.21683 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.003802 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.826738 B = 7362.670917 C = 7690.032514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 H 0.120 0.880 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.682 5.682 7 C 0.160 3.840 8 C 0.077 3.923 9 O -0.575 6.575 10 C -0.116 4.116 11 C -0.115 4.115 12 C 0.141 3.859 13 N -0.604 5.604 14 C -0.264 4.264 15 H 0.067 0.933 16 C -0.035 4.035 17 N -0.928 5.928 18 Si 0.963 3.037 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.272 1.272 22 C 0.191 3.809 23 C -0.118 4.118 24 C -0.076 4.076 25 C -0.168 4.168 26 C 0.079 3.921 27 N -0.517 5.517 28 C 0.114 3.886 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.403 0.597 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.387 0.613 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.249 0.751 43 H -0.001 1.001 44 H 0.078 0.922 45 H 0.157 0.843 46 H 0.168 0.832 47 H 0.178 0.822 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -2.783 16.307 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 H 0.138 0.862 4 C 0.306 3.694 5 O -0.453 6.453 6 N -0.330 5.330 7 C 0.072 3.928 8 C -0.002 4.002 9 O -0.381 6.381 10 C -0.154 4.154 11 C -0.154 4.154 12 C 0.016 3.984 13 N -0.327 5.327 14 C -0.394 4.394 15 H 0.085 0.915 16 C -0.232 4.232 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.207 1.207 20 H -0.226 1.226 21 H -0.197 1.197 22 C 0.064 3.936 23 C -0.120 4.120 24 C -0.101 4.101 25 C -0.188 4.188 26 C -0.077 4.077 27 N -0.227 5.227 28 C -0.043 4.043 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.059 0.941 43 H 0.017 0.983 44 H 0.097 0.903 45 H 0.175 0.825 46 H 0.186 0.814 47 H 0.195 0.805 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.503 -3.702 16.405 17.410 hybrid contribution -0.771 1.000 -1.175 1.724 sum 3.732 -2.702 15.230 15.912 Atomic orbital electron populations 1.21751 0.90985 1.02810 1.03731 1.20229 0.98537 1.00490 0.89129 0.86167 1.20686 0.79765 0.84115 0.84814 1.90592 1.40374 1.27247 1.87071 1.45740 1.46844 1.36060 1.04401 1.21027 0.93135 0.91270 0.87366 1.22460 0.81444 0.96676 0.99607 1.86515 1.20243 1.34133 1.97229 1.21684 0.93769 0.97985 1.01977 1.21786 1.00041 0.94807 0.98726 1.21074 0.84562 0.98207 0.94589 1.44153 1.01457 1.01793 1.85268 1.19345 1.07122 0.93847 1.19098 0.91494 1.25995 1.01699 0.99044 0.96442 1.70068 1.29097 1.27013 1.31059 0.85429 0.77898 0.79914 0.77640 1.20675 1.22618 1.19733 1.20751 0.99544 0.83516 0.89740 1.20392 0.99704 0.95522 0.96385 1.21848 0.93893 1.01378 0.93020 1.22445 1.01433 0.95743 0.99140 1.23280 0.93416 0.93366 0.97641 1.67662 1.11868 1.39618 1.03506 1.22371 0.96680 0.91710 0.93494 0.89635 0.91550 0.92652 0.76235 0.93576 0.92671 0.76547 0.91120 0.91963 0.92852 0.90760 0.92526 0.97015 0.94145 0.98348 0.90337 0.82532 0.81449 0.80460 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.90 71.98 0.64 -2.38 16 2 C -0.06 -1.52 2.93 -12.29 -0.04 -1.56 16 3 H 0.12 2.53 7.93 -2.39 -0.02 2.51 16 4 C 0.52 16.54 6.32 87.66 0.55 17.09 16 5 O -0.57 -20.91 11.46 -3.02 -0.03 -20.95 16 6 N -0.68 -23.76 3.87 -422.57 -1.63 -25.39 16 7 C 0.16 6.05 0.45 3.68 0.00 6.05 16 8 C 0.08 2.73 5.68 71.98 0.41 3.13 16 9 O -0.57 -20.01 13.09 -148.98 -1.95 -21.96 16 10 C -0.12 -4.07 4.42 30.62 0.14 -3.93 16 11 C -0.11 -3.87 5.93 30.67 0.18 -3.69 16 12 C 0.14 5.63 6.52 86.36 0.56 6.19 16 13 N -0.60 -28.32 2.91 -698.95 -2.03 -30.35 16 14 C -0.26 -13.42 9.54 84.03 0.80 -12.62 16 15 H 0.07 3.29 7.83 -2.91 -0.02 3.27 16 16 C -0.04 -1.85 5.29 84.86 0.45 -1.40 16 17 N -0.93 -52.26 10.75 21.65 0.23 -52.02 16 18 Si 0.96 42.50 29.55 68.60 2.03 44.53 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 C 0.19 8.84 3.80 86.35 0.33 9.16 16 23 C -0.12 -2.91 4.40 -19.77 -0.09 -3.00 16 24 C -0.08 -1.49 9.81 22.47 0.22 -1.27 16 25 C -0.17 -2.88 10.11 22.36 0.23 -2.66 16 26 C 0.08 1.65 11.18 84.69 0.95 2.59 16 27 N -0.52 -14.40 10.36 -195.84 -2.03 -16.43 16 28 C 0.11 3.23 9.13 84.67 0.77 4.01 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.57 7.46 -2.39 -0.02 1.55 16 31 H 0.05 1.31 7.41 -2.39 -0.02 1.30 16 32 H 0.40 14.82 7.76 -92.71 -0.72 14.10 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.96 6.43 -2.39 -0.02 1.95 16 35 H 0.39 9.62 9.12 -74.06 -0.68 8.95 16 36 H 0.07 2.54 6.15 -2.39 -0.01 2.53 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.83 7.42 -2.39 -0.02 1.82 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 42 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.08 4.19 5.92 -2.39 -0.01 4.18 16 45 H 0.16 2.23 8.00 -2.91 -0.02 2.20 16 46 H 0.17 1.61 8.06 -2.92 -0.02 1.59 16 47 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.13 4.03 7.53 -2.91 -0.02 4.01 16 Total: -1.00 -66.84 377.88 0.27 -66.57 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.41 Total: 40.27 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.11 Total: 15.74 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -5.46 Total: -124.20 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.98 Total: -42.91 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.84 0.27 -66.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.760 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds