Wall clock time and date at job start Tue Mar 31 2020 17:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.36944 * 120.00165 * 205.00005 * 6 4 2 8 8 H 1.07999 * 119.99729 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99963 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00127 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99750 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46866 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46594 * 120.00278 * 11 9 7 14 14 H 1.48493 * 109.47387 * 240.00570 * 11 9 7 15 15 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 16 16 C 1.54906 * 101.58328 * 35.49714 * 15 4 2 17 17 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 18 18 C 1.34780 * 125.64589 * 298.39914 * 17 2 1 19 19 O 1.21275 * 120.00143 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.52998 * 109.47147 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47548 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47299 * 180.02562 * 22 21 20 24 24 C 1.35917 * 116.99724 * 180.02562 * 23 22 21 25 25 C 1.39134 * 120.47053 * 179.97438 * 24 23 22 26 26 C 1.38537 * 118.37410 * 179.97438 * 25 24 23 27 27 C 1.38248 * 119.22102 * 359.97438 * 26 25 24 28 28 N 1.31849 * 120.88690 * 0.02562 * 27 26 25 29 29 C 1.31844 * 121.78187 * 359.69546 * 28 27 26 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 34 34 H 0.96996 * 119.99504 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.99799 * 277.42087 * 15 4 2 36 36 H 1.08999 * 111.03442 * 153.58709 * 15 4 2 37 37 H 1.09001 * 110.36496 * 204.15090 * 16 15 4 38 38 H 1.08995 * 110.45868 * 81.88076 * 16 15 4 39 39 H 1.09001 * 109.47016 * 299.99445 * 20 18 17 40 40 H 1.09000 * 109.47482 * 59.99951 * 20 18 17 41 41 H 1.09000 * 109.46916 * 300.00343 * 21 20 18 42 42 H 1.09004 * 109.47194 * 59.99734 * 21 20 18 43 43 H 1.09005 * 109.46591 * 300.00333 * 22 21 20 44 44 H 1.08996 * 109.46804 * 59.99593 * 22 21 20 45 45 H 1.08003 * 120.81744 * 0.02562 * 25 24 23 46 46 H 1.08006 * 120.38967 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.56097 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.65973 * 180.28873 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1995 -3.5998 8 1 2.1647 -1.2049 -3.8633 9 6 2.8372 0.6953 -4.5910 10 7 3.1944 1.9208 -4.2699 11 14 2.8417 0.1598 -6.3807 12 1 2.4028 -1.2558 -6.4748 13 1 1.9114 1.0187 -7.1566 14 1 4.2137 0.2908 -6.9332 15 6 3.2876 -1.5152 -0.6903 16 6 2.8145 -1.8783 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.8074 -0.3586 2.4662 19 8 1.1436 0.6248 2.7171 20 6 2.3834 -1.1850 3.5870 21 6 1.9854 -0.5705 4.9304 22 6 2.5707 -1.4091 6.0684 23 8 2.1985 -0.8353 7.3231 24 6 2.6411 -1.4633 8.4443 25 6 2.3218 -0.9664 9.7040 26 6 2.7954 -1.6412 10.8174 27 6 3.5632 -2.7773 10.6419 28 7 3.8479 -3.2220 9.4338 29 6 3.4122 -2.6124 8.3490 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 2.7188 1.0960 -2.0512 34 1 3.4596 2.5458 -4.9626 35 1 4.1654 -0.8697 -0.6593 36 1 3.4858 -2.4128 -1.2761 37 1 3.6717 -2.0318 1.3950 38 1 2.1892 -2.7708 0.7185 39 1 1.9972 -2.2024 3.5239 40 1 3.4701 -1.2031 3.5039 41 1 2.3719 0.4468 4.9933 42 1 0.8988 -0.5520 5.0139 43 1 2.1846 -2.4265 6.0056 44 1 3.6573 -1.4270 5.9847 45 1 1.7187 -0.0769 9.8113 46 1 2.5668 -1.2842 11.8108 47 1 3.9357 -3.3074 11.5061 48 1 3.6622 -3.0091 7.3761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486095367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:25 Heat of formation + Delta-G solvation = -29.250804 kcal Electronic energy + Delta-G solvation = -27439.168642 eV Core-core repulsion = 23494.591071 eV Total energy + Delta-G solvation = -3944.577571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00487 -40.07285 -38.64900 -37.56263 -34.24557 -34.13580 -32.70723 -31.68266 -30.95138 -30.61469 -29.30154 -27.45667 -25.24846 -24.40095 -23.58886 -23.07202 -22.59949 -21.58921 -20.12925 -19.01706 -18.43927 -17.36961 -17.25420 -17.00663 -16.87768 -16.60866 -16.02942 -15.30747 -14.93764 -14.79292 -14.51743 -14.16550 -13.91047 -13.63307 -13.45874 -13.41572 -13.31187 -12.91901 -12.84227 -12.59299 -12.43549 -12.10489 -12.01737 -11.79285 -11.69899 -11.59406 -11.19374 -11.06276 -11.04742 -10.88039 -10.63115 -10.26186 -10.15800 -10.05664 -9.88010 -9.82043 -9.60449 -8.98991 -8.88743 -8.44242 -7.07381 -5.85445 -3.16086 0.66892 0.85527 2.54847 2.73595 3.17657 3.36831 3.38260 3.44042 3.46351 4.04765 4.21057 4.34189 4.45828 4.50244 4.51565 4.58364 4.67622 4.79625 4.91685 4.95206 5.01133 5.04867 5.10166 5.23040 5.27329 5.34306 5.44971 5.52393 5.55383 5.64173 5.65098 5.73786 5.76495 5.89220 5.94128 6.05907 6.09156 6.09203 6.25590 6.42126 6.54467 6.58212 6.70026 6.81658 6.87307 7.51442 7.62472 7.72730 8.29022 8.32277 9.43445 9.97703 10.32231 11.36698 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.001654 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.677942 B =16920.794932 C =17285.357751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.526 3.474 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.103 4.103 22 C 0.056 3.944 23 O -0.306 6.306 24 C 0.084 3.916 25 C -0.111 4.111 26 C -0.132 4.132 27 C 0.055 3.945 28 N -0.451 5.451 29 C 0.015 3.985 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.158 0.842 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -10.483 26.989 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.095 0.905 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.420 6.420 20 C -0.173 4.173 21 C -0.141 4.141 22 C -0.019 4.019 23 O -0.218 6.218 24 C 0.036 3.964 25 C -0.138 4.138 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.143 4.143 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.175 0.825 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.424 -10.559 26.858 28.862 hybrid contribution -0.135 0.569 -0.970 1.132 sum -0.559 -9.990 25.888 27.754 Atomic orbital electron populations 1.22037 0.94927 1.01509 1.02717 1.21971 0.94451 0.96966 0.84491 0.90517 1.21242 0.93522 0.91602 0.87185 0.91470 1.42355 1.79248 1.11870 1.01923 1.19266 1.38473 0.96963 0.82908 0.90906 1.24772 1.01857 0.95844 0.98138 1.69676 1.51074 1.04665 1.32244 0.86110 0.77227 0.77645 0.85114 1.20481 1.21795 1.21816 1.23581 1.01453 1.01787 0.93015 1.22389 0.94559 0.88288 0.97302 1.48605 1.52049 1.28622 1.05077 1.20056 0.80731 0.85364 0.82423 1.90701 1.40281 1.27742 1.83294 1.21494 1.02722 1.00358 0.92754 1.21228 1.02931 1.00046 0.89876 1.22952 1.00045 0.97628 0.81234 1.86103 1.71177 1.51852 1.12664 1.20105 0.95216 0.93164 0.87882 1.21005 1.01701 1.01627 0.89454 1.22044 0.97706 0.96076 0.99315 1.22682 0.97542 0.95111 0.94907 1.67534 1.19037 1.30732 0.98710 1.22973 0.98927 0.93828 0.98583 0.92032 0.93178 0.91155 0.77979 0.93396 0.90661 0.90530 0.91344 0.91664 0.88713 0.88656 0.89774 0.89823 0.91529 0.91482 0.83903 0.84030 0.82515 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.10 37.16 0.34 -2.20 16 2 C 0.12 2.15 3.21 -66.95 -0.21 1.94 16 3 H 0.08 1.51 7.72 -51.92 -0.40 1.11 16 4 C 0.18 3.27 3.14 -66.10 -0.21 3.06 16 5 H 0.07 1.25 7.80 -51.92 -0.41 0.84 16 6 N -0.71 -16.99 5.22 -51.65 -0.27 -17.26 16 7 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 11 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C -0.16 -2.42 6.77 -24.59 -0.17 -2.59 16 16 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 17 N -0.61 -8.78 3.07 -163.02 -0.50 -9.28 16 18 C 0.53 7.39 7.64 -10.98 -0.08 7.31 16 19 O -0.54 -9.64 15.02 5.56 0.08 -9.56 16 20 C -0.13 -1.19 4.71 -27.88 -0.13 -1.32 16 21 C -0.10 -0.95 4.87 -26.73 -0.13 -1.08 16 22 C 0.06 0.41 4.75 37.16 0.18 0.59 16 23 O -0.31 -2.92 10.15 -19.48 -0.20 -3.12 16 24 C 0.08 0.76 6.71 -39.08 -0.26 0.49 16 25 C -0.11 -0.85 10.13 -39.14 -0.40 -1.24 16 26 C -0.13 -0.81 10.11 -39.47 -0.40 -1.20 16 27 C 0.06 0.40 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.31 10.36 -13.13 -0.14 -4.45 16 29 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 30 H 0.06 1.05 6.88 -51.93 -0.36 0.70 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.39 9.97 7.57 -40.82 -0.31 9.66 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.69 7.85 -51.93 -0.41 0.28 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.07 0.39 7.67 -51.93 -0.40 -0.01 16 44 H 0.07 0.40 7.69 -51.93 -0.40 0.00 16 45 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 47 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 48 H 0.16 1.07 6.32 -52.49 -0.33 0.74 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -32.98 394.77 -9.07 -42.05 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.59 Total: 7.55 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.11 Total: -1.92 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.18 Total: -57.60 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.11 Total: -12.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.98 -9.07 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486095367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.799 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds