Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.36944 * 120.00165 * 205.00005 * 6 4 2 8 8 H 1.07999 * 119.99729 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99963 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00127 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99750 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46866 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46594 * 120.00278 * 11 9 7 14 14 H 1.48493 * 109.47387 * 240.00570 * 11 9 7 15 15 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 16 16 C 1.54906 * 101.58328 * 35.49714 * 15 4 2 17 17 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 18 18 C 1.34780 * 125.64589 * 298.39914 * 17 2 1 19 19 O 1.21275 * 120.00143 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.52998 * 109.47147 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47548 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47299 * 180.02562 * 22 21 20 24 24 C 1.35917 * 116.99724 * 180.02562 * 23 22 21 25 25 C 1.39134 * 120.47053 * 179.97438 * 24 23 22 26 26 C 1.38537 * 118.37410 * 179.97438 * 25 24 23 27 27 C 1.38248 * 119.22102 * 359.97438 * 26 25 24 28 28 N 1.31849 * 120.88690 * 0.02562 * 27 26 25 29 29 C 1.31844 * 121.78187 * 359.69546 * 28 27 26 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 34 34 H 0.96996 * 119.99504 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.99799 * 277.42087 * 15 4 2 36 36 H 1.08999 * 111.03442 * 153.58709 * 15 4 2 37 37 H 1.09001 * 110.36496 * 204.15090 * 16 15 4 38 38 H 1.08995 * 110.45868 * 81.88076 * 16 15 4 39 39 H 1.09001 * 109.47016 * 299.99445 * 20 18 17 40 40 H 1.09000 * 109.47482 * 59.99951 * 20 18 17 41 41 H 1.09000 * 109.46916 * 300.00343 * 21 20 18 42 42 H 1.09004 * 109.47194 * 59.99734 * 21 20 18 43 43 H 1.09005 * 109.46591 * 300.00333 * 22 21 20 44 44 H 1.08996 * 109.46804 * 59.99593 * 22 21 20 45 45 H 1.08003 * 120.81744 * 0.02562 * 25 24 23 46 46 H 1.08006 * 120.38967 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.56097 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.65973 * 180.28873 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1995 -3.5998 8 1 2.1647 -1.2049 -3.8633 9 6 2.8372 0.6953 -4.5910 10 7 3.1944 1.9208 -4.2699 11 14 2.8417 0.1598 -6.3807 12 1 2.4028 -1.2558 -6.4748 13 1 1.9114 1.0187 -7.1566 14 1 4.2137 0.2908 -6.9332 15 6 3.2876 -1.5152 -0.6903 16 6 2.8145 -1.8783 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.8074 -0.3586 2.4662 19 8 1.1436 0.6248 2.7171 20 6 2.3834 -1.1850 3.5870 21 6 1.9854 -0.5705 4.9304 22 6 2.5707 -1.4091 6.0684 23 8 2.1985 -0.8353 7.3231 24 6 2.6411 -1.4633 8.4443 25 6 2.3218 -0.9664 9.7040 26 6 2.7954 -1.6412 10.8174 27 6 3.5632 -2.7773 10.6419 28 7 3.8479 -3.2220 9.4338 29 6 3.4122 -2.6124 8.3490 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 2.7188 1.0960 -2.0512 34 1 3.4596 2.5458 -4.9626 35 1 4.1654 -0.8697 -0.6593 36 1 3.4858 -2.4128 -1.2761 37 1 3.6717 -2.0318 1.3950 38 1 2.1892 -2.7708 0.7185 39 1 1.9972 -2.2024 3.5239 40 1 3.4701 -1.2031 3.5039 41 1 2.3719 0.4468 4.9933 42 1 0.8988 -0.5520 5.0139 43 1 2.1846 -2.4265 6.0056 44 1 3.6573 -1.4270 5.9847 45 1 1.7187 -0.0769 9.8113 46 1 2.5668 -1.2842 11.8108 47 1 3.9357 -3.3074 11.5061 48 1 3.6622 -3.0091 7.3761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486095367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = -50.862193 kcal Electronic energy + Delta-G solvation = -27440.105782 eV Core-core repulsion = 23494.591071 eV Total energy + Delta-G solvation = -3945.514711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57744 -41.23302 -39.29650 -38.80074 -35.90750 -35.00248 -33.42488 -33.16788 -32.24452 -31.26561 -30.78564 -28.24591 -26.84324 -25.15539 -24.72559 -24.19019 -23.51514 -22.43245 -21.50754 -20.05559 -19.22831 -19.08407 -18.16650 -17.66911 -17.53733 -17.42633 -17.13042 -16.55205 -16.29192 -15.65036 -15.44853 -15.32939 -15.07560 -14.80088 -14.62294 -14.48560 -14.08954 -14.04625 -13.90976 -13.54859 -13.28909 -13.26184 -13.11632 -12.96644 -12.93925 -12.65335 -12.56629 -12.49173 -12.29057 -12.13155 -12.06433 -11.72499 -11.69487 -11.52186 -10.95382 -10.79282 -10.67980 -10.43864 -9.63512 -9.45609 -9.02627 -7.94634 -5.24503 0.14894 0.29506 1.49209 1.49926 1.59737 1.66490 1.81729 2.23220 2.57516 2.82662 3.36310 3.47184 3.57477 3.68248 3.77556 3.80413 3.90225 3.93180 4.00008 4.05183 4.10856 4.19750 4.28494 4.36209 4.38115 4.42518 4.45268 4.53271 4.55298 4.61801 4.65608 4.67878 4.80848 4.94626 5.00612 5.03967 5.06686 5.15536 5.20759 5.23005 5.26514 5.37349 5.48432 5.55334 5.59478 6.25454 6.25976 6.62976 6.97151 7.19352 7.32279 8.04851 8.28090 9.29098 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.001654 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.677942 B =16920.794932 C =17285.357751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.040 0.960 4 C 0.169 3.831 5 H 0.072 0.928 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.084 0.916 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.298 1.298 14 H -0.296 1.296 15 C -0.150 4.150 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.518 3.482 19 O -0.590 6.590 20 C -0.120 4.120 21 C -0.098 4.098 22 C 0.058 3.942 23 O -0.327 6.327 24 C 0.068 3.932 25 C -0.125 4.125 26 C -0.124 4.124 27 C 0.047 3.953 28 N -0.480 5.480 29 C 0.004 3.996 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.152 0.848 46 H 0.174 0.826 47 H 0.182 0.818 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -13.789 28.743 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.058 0.942 4 C 0.059 3.941 5 H 0.090 0.910 6 N -0.368 5.368 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.185 1.185 13 H -0.226 1.226 14 H -0.223 1.223 15 C -0.191 4.191 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.309 3.691 19 O -0.470 6.470 20 C -0.160 4.160 21 C -0.136 4.136 22 C -0.016 4.016 23 O -0.240 6.240 24 C 0.020 3.980 25 C -0.151 4.151 26 C -0.143 4.143 27 C -0.111 4.111 28 N -0.189 5.189 29 C -0.153 4.153 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.170 0.830 46 H 0.191 0.809 47 H 0.199 0.801 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.044 -13.949 28.646 31.862 hybrid contribution -0.326 1.599 -1.380 2.137 sum -0.282 -12.351 27.266 29.934 Atomic orbital electron populations 1.21924 0.94518 1.02345 1.01386 1.21628 0.94708 0.95392 0.85747 0.94208 1.21459 0.95161 0.91038 0.86409 0.91017 1.42536 1.79661 1.12154 1.02494 1.19691 1.36018 0.97060 0.84022 0.89773 1.25576 1.02993 0.96066 1.02183 1.69843 1.53455 1.05945 1.32997 0.85076 0.76535 0.77931 0.80219 1.18485 1.22581 1.22309 1.23392 0.98804 1.01209 0.95681 1.22563 0.96037 0.87838 0.95212 1.48680 1.52234 1.29086 1.04457 1.21062 0.79883 0.85152 0.83025 1.90686 1.42420 1.30014 1.83918 1.21518 1.04064 1.00641 0.89728 1.21117 1.01811 0.99425 0.91249 1.22990 1.00982 0.97854 0.79814 1.86063 1.71748 1.52677 1.13462 1.20283 0.95970 0.93659 0.88075 1.21341 1.01931 1.02187 0.89668 1.22383 0.96405 0.95225 1.00327 1.23194 0.97297 0.95540 0.95044 1.67555 1.20064 1.31671 0.99638 1.23193 0.99036 0.93880 0.99196 0.93071 0.91134 0.92744 0.79815 0.94163 0.92699 0.89253 0.87555 0.88587 0.85214 0.85884 0.92134 0.91641 0.89431 0.89786 0.83045 0.80891 0.80146 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.10 71.98 0.66 -4.13 16 2 C 0.13 4.53 3.21 45.34 0.15 4.68 16 3 H 0.04 1.67 7.72 -2.38 -0.02 1.65 16 4 C 0.17 6.17 3.14 46.18 0.14 6.31 16 5 H 0.07 2.56 7.80 -2.38 -0.02 2.54 16 6 N -0.73 -35.44 5.22 -317.32 -1.66 -37.09 16 7 C -0.24 -12.51 9.96 84.03 0.84 -11.67 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 11 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 15 C -0.15 -4.30 6.77 31.98 0.22 -4.09 16 16 C 0.11 2.06 6.69 86.86 0.58 2.64 16 17 N -0.61 -16.48 3.07 -788.08 -2.42 -18.90 16 18 C 0.52 13.81 7.64 87.66 0.67 14.48 16 19 O -0.59 -21.36 15.02 -3.01 -0.05 -21.41 16 20 C -0.12 -1.75 4.71 29.85 0.14 -1.61 16 21 C -0.10 -1.67 4.87 30.59 0.15 -1.52 16 22 C 0.06 0.72 4.75 71.98 0.34 1.07 16 23 O -0.33 -5.94 10.15 -92.61 -0.94 -6.88 16 24 C 0.07 1.14 6.71 22.60 0.15 1.29 16 25 C -0.12 -1.74 10.13 22.56 0.23 -1.51 16 26 C -0.12 -1.25 10.11 22.34 0.23 -1.03 16 27 C 0.05 0.58 11.18 84.69 0.95 1.53 16 28 N -0.48 -8.44 10.36 -195.44 -2.02 -10.46 16 29 C 0.00 0.07 10.22 84.80 0.87 0.93 16 30 H 0.05 1.80 6.88 -2.39 -0.02 1.78 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.37 20.05 7.57 -92.71 -0.70 19.35 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.11 1.38 7.48 -2.39 -0.02 1.36 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.12 1.19 7.85 -2.39 -0.02 1.17 16 41 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 42 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 43 H 0.09 0.73 7.67 -2.38 -0.02 0.71 16 44 H 0.08 0.77 7.69 -2.39 -0.02 0.75 16 45 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 47 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 48 H 0.17 1.97 6.32 -2.91 -0.02 1.95 16 Total: -1.00 -76.10 394.77 2.25 -73.84 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.26 Total: 29.10 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.77 Total: 3.59 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -5.81 Total: -125.28 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.99 Total: -28.29 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -76.10 2.25 -73.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486095367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.982 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds