Wall clock time and date at job start Tue Mar 31 2020 17:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 6 6 N 1.46500 * 110.71881 * 20.98987 * 4 2 1 7 7 C 1.36942 * 120.00285 * 154.99937 * 6 4 2 8 8 H 1.07998 * 119.99706 * 359.97438 * 7 6 4 9 9 C 1.38814 * 120.00289 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47277 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47077 * 119.99817 * 11 9 7 14 14 H 1.48500 * 109.47172 * 239.99706 * 11 9 7 15 15 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 16 16 C 1.54914 * 101.57928 * 324.49777 * 15 4 2 17 17 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 18 18 C 1.34773 * 125.64711 * 300.52153 * 17 2 1 19 19 O 1.21282 * 120.00056 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99998 * 179.97438 * 18 17 2 21 21 C 1.52994 * 109.47092 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.47038 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.47256 * 180.02562 * 22 21 20 24 24 C 1.35909 * 117.00133 * 180.02562 * 23 22 21 25 25 C 1.39133 * 120.47396 * 180.02562 * 24 23 22 26 26 C 1.38539 * 118.37431 * 180.02562 * 25 24 23 27 27 C 1.38248 * 119.21965 * 0.02562 * 26 25 24 28 28 N 1.31851 * 120.89023 * 359.97438 * 27 26 25 29 29 C 1.31838 * 121.77897 * 359.71321 * 28 27 26 30 30 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 31 31 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 32 32 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 33 33 H 0.96997 * 120.00207 * 334.99268 * 6 4 2 34 34 H 0.96994 * 119.99937 * 180.02562 * 10 9 7 35 35 H 1.08997 * 111.00659 * 82.56898 * 15 4 2 36 36 H 1.08996 * 111.00764 * 206.42646 * 15 4 2 37 37 H 1.09000 * 110.36623 * 155.84512 * 16 15 4 38 38 H 1.08996 * 110.37094 * 278.16884 * 16 15 4 39 39 H 1.08992 * 109.47116 * 300.00626 * 20 18 17 40 40 H 1.09004 * 109.46801 * 60.00288 * 20 18 17 41 41 H 1.08992 * 109.47673 * 300.00312 * 21 20 18 42 42 H 1.09004 * 109.47040 * 60.00461 * 21 20 18 43 43 H 1.09002 * 109.47208 * 300.00635 * 22 21 20 44 44 H 1.09004 * 109.46791 * 60.00355 * 22 21 20 45 45 H 1.08000 * 120.81573 * 0.02607 * 25 24 23 46 46 H 1.08003 * 120.38760 * 180.02562 * 26 25 24 47 47 H 1.08005 * 119.55268 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.65973 * 180.28555 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9624 -0.2775 -1.6222 6 7 1.0280 -0.8026 -2.2872 7 6 1.3926 -0.9373 -3.6003 8 1 2.4372 -1.0029 -3.8666 9 6 0.4196 -0.9897 -4.5890 10 7 -0.8534 -0.9103 -4.2643 11 14 0.9171 -1.1728 -6.3801 12 1 2.3973 -1.2402 -6.4784 13 1 0.3276 -2.4188 -6.9327 14 1 0.4217 -0.0057 -7.1532 15 6 2.3556 -2.1674 -0.6946 16 6 2.8618 -1.8473 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.7793 -0.3853 2.4652 19 8 1.0805 0.5729 2.7189 20 6 2.3627 -1.2097 3.5838 21 6 1.9245 -0.6270 4.9288 22 6 2.5163 -1.4643 6.0644 23 8 2.1066 -0.9204 7.3208 24 6 2.5497 -1.5511 8.4402 25 6 2.1942 -1.0831 9.7013 26 6 2.6708 -1.7589 10.8128 27 6 3.4780 -2.8670 10.6341 28 7 3.7963 -3.2846 9.4247 29 6 3.3588 -2.6735 8.3416 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3632 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 0.0899 -0.7434 -2.0481 34 1 -1.5333 -0.9473 -4.9551 35 1 1.4503 -2.7735 -0.6617 36 1 3.1310 -2.6578 -1.2830 37 1 2.7164 -2.7062 1.3893 38 1 3.9134 -1.5620 0.7090 39 1 2.0095 -2.2374 3.5001 40 1 3.4506 -1.1929 3.5181 41 1 2.2781 0.4006 5.0122 42 1 0.8366 -0.6434 4.9948 43 1 2.1624 -2.4918 5.9808 44 1 3.6043 -1.4483 5.9987 45 1 1.5621 -0.2143 9.8111 46 1 2.4147 -1.4240 11.8071 47 1 3.8529 -3.3976 11.4969 48 1 3.6371 -3.0478 7.3675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486095368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:28 Heat of formation + Delta-G solvation = -22.393791 kcal Electronic energy + Delta-G solvation = -27542.653458 eV Core-core repulsion = 23598.373230 eV Total energy + Delta-G solvation = -3944.280229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00437 -40.09635 -38.65365 -37.62771 -34.28180 -34.14625 -32.70328 -31.70589 -30.75785 -30.61394 -29.16176 -27.40369 -25.24563 -24.42842 -23.70011 -23.28411 -22.61367 -21.71279 -19.65025 -18.81671 -18.45293 -17.61201 -17.27101 -17.00809 -16.87168 -16.61158 -15.84225 -15.33702 -14.97837 -14.85907 -14.53483 -14.24714 -13.96090 -13.77224 -13.49468 -13.34098 -13.27743 -12.90408 -12.67052 -12.55590 -12.29900 -12.10816 -11.98159 -11.77935 -11.63169 -11.57244 -11.22645 -11.05429 -10.99100 -10.85284 -10.49127 -10.22843 -10.15762 -10.01699 -9.87957 -9.77859 -9.54018 -8.99235 -8.88640 -8.43474 -7.06406 -5.85280 -3.15256 0.66938 0.85585 2.55031 2.74149 3.18921 3.36877 3.38495 3.44371 3.46610 4.04837 4.21107 4.34426 4.45968 4.50402 4.52208 4.58474 4.67821 4.79837 4.92223 4.95700 5.01772 5.04992 5.10246 5.23627 5.27711 5.37165 5.51569 5.52631 5.55856 5.60912 5.65151 5.74412 5.79890 5.92255 6.02374 6.07437 6.09220 6.19933 6.28932 6.51823 6.53756 6.67991 6.81162 6.81790 6.95177 7.51493 7.63304 7.73726 8.30010 8.33524 9.44895 9.99733 10.34574 11.37151 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.001658 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.091588 B =16882.387989 C =17299.173812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.173 3.827 5 H 0.066 0.934 6 N -0.716 5.716 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.526 3.474 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.103 4.103 22 C 0.056 3.944 23 O -0.306 6.306 24 C 0.084 3.916 25 C -0.111 4.111 26 C -0.132 4.132 27 C 0.055 3.945 28 N -0.451 5.451 29 C 0.015 3.985 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.158 0.842 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -3.575 26.980 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.084 0.916 6 N -0.359 5.359 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.420 6.420 20 C -0.173 4.173 21 C -0.141 4.141 22 C -0.019 4.019 23 O -0.218 6.218 24 C 0.036 3.964 25 C -0.138 4.138 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.175 0.825 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.488 -3.587 26.849 28.701 hybrid contribution -0.447 0.310 -0.982 1.122 sum 9.041 -3.277 25.867 27.597 Atomic orbital electron populations 1.21995 0.94562 1.02296 1.02756 1.21886 0.95418 0.95812 0.84618 0.91160 1.21185 0.93241 0.92019 0.87444 0.91636 1.42667 1.04480 1.86999 1.01788 1.19300 0.92603 1.42678 0.83080 0.90978 1.24762 0.95225 1.02560 0.98130 1.69667 0.98875 1.56956 1.32296 0.86103 0.77542 0.77284 0.85126 1.20505 1.21847 1.21811 1.23560 1.01672 1.01383 0.92987 1.22388 0.94501 0.88416 0.97313 1.48634 1.50037 1.30608 1.05078 1.20048 0.80995 0.85116 0.82394 1.90700 1.38835 1.29224 1.83234 1.21494 1.02478 1.00585 0.92774 1.21226 1.02833 1.00127 0.89886 1.22956 0.99658 0.98054 0.81192 1.86102 1.69797 1.53212 1.12685 1.20105 0.95133 0.93217 0.87909 1.21004 1.01674 1.01661 0.89453 1.22044 0.97635 0.96128 0.99333 1.22682 0.97239 0.95448 0.94879 1.67533 1.20106 1.29639 0.98731 1.22974 0.98608 0.94127 0.98604 0.92672 0.92189 0.90162 0.77124 0.93401 0.90709 0.90558 0.91361 0.91604 0.88665 0.88730 0.89822 0.89778 0.91494 0.91521 0.83904 0.84030 0.82516 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.93 37.16 0.29 -2.65 16 2 C 0.13 2.19 3.47 -66.95 -0.23 1.95 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.22 3.49 -66.10 -0.23 2.99 16 5 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 6 N -0.72 -16.98 4.94 -51.65 -0.25 -17.24 16 7 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 11 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C -0.15 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 17 N -0.61 -8.77 3.08 -163.01 -0.50 -9.28 16 18 C 0.53 7.39 7.63 -10.99 -0.08 7.31 16 19 O -0.54 -9.62 14.89 5.56 0.08 -9.54 16 20 C -0.13 -1.19 4.71 -27.88 -0.13 -1.32 16 21 C -0.10 -0.95 4.87 -26.73 -0.13 -1.08 16 22 C 0.06 0.41 4.75 37.16 0.18 0.59 16 23 O -0.31 -2.92 10.15 -19.45 -0.20 -3.12 16 24 C 0.08 0.76 6.71 -39.07 -0.26 0.49 16 25 C -0.11 -0.85 10.13 -39.14 -0.40 -1.24 16 26 C -0.13 -0.81 10.11 -39.47 -0.40 -1.21 16 27 C 0.06 0.40 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.31 10.36 -13.12 -0.14 -4.45 16 29 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 30 H 0.05 1.04 8.02 -51.93 -0.42 0.63 16 31 H 0.06 1.12 6.76 -51.93 -0.35 0.77 16 32 H 0.08 1.64 6.79 -51.93 -0.35 1.29 16 33 H 0.39 9.85 5.06 -40.82 -0.21 9.65 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.69 7.85 -51.93 -0.41 0.29 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.07 0.40 7.67 -51.93 -0.40 0.00 16 44 H 0.07 0.39 7.69 -51.93 -0.40 -0.01 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 46 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 47 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 48 H 0.16 1.08 6.32 -52.49 -0.33 0.74 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -33.00 390.40 -9.06 -42.06 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.44 Total: 8.01 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.20 Total: -2.45 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.17 Total: -57.52 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.11 Total: -12.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.00 -9.06 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486095368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.665 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds