Wall clock time and date at job start Tue Mar 31 2020 17:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.70558 * 2 1 4 4 C 1.53188 * 109.58375 * 120.36166 * 2 1 3 5 5 H 1.08998 * 109.53124 * 54.44996 * 4 2 1 6 6 N 1.46506 * 109.49551 * 294.37127 * 4 2 1 7 7 C 1.34774 * 120.00114 * 155.16672 * 6 4 2 8 8 O 1.21281 * 120.00037 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99954 * 179.97438 * 7 6 4 10 10 C 1.53004 * 109.46955 * 179.97438 * 9 7 6 11 11 N 1.46497 * 109.46921 * 180.02562 * 10 9 7 12 12 C 1.35763 * 119.62523 * 269.72083 * 11 10 9 13 13 C 1.35347 * 120.70119 * 179.76051 * 12 11 10 14 14 C 1.40197 * 119.94888 * 0.51494 * 13 12 11 15 15 C 1.36397 * 119.26618 * 359.74724 * 14 13 12 16 16 C 1.34664 * 119.62489 * 90.00222 * 11 10 9 17 17 O 1.22056 * 119.98282 * 359.97438 * 16 11 10 18 18 C 1.53041 * 109.31246 * 174.42423 * 4 2 1 19 19 C 1.53042 * 109.53482 * 298.62945 * 18 4 2 20 20 C 1.53194 * 109.31161 * 61.36752 * 19 18 4 21 21 N 1.46924 * 108.77338 * 305.36026 * 20 19 18 22 22 C 1.36937 * 120.63171 * 233.60848 * 21 20 19 23 23 H 1.08004 * 120.00073 * 150.16429 * 22 21 20 24 24 C 1.38806 * 120.00233 * 330.16367 * 22 21 20 25 25 N 1.31620 * 119.99938 * 344.50009 * 24 22 21 26 26 Si 1.86800 * 120.00375 * 164.49735 * 24 22 21 27 27 H 1.48504 * 109.46739 * 60.00008 * 26 24 22 28 28 H 1.48497 * 109.47277 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47161 * 300.00293 * 26 24 22 30 30 H 1.09003 * 109.47529 * 299.64330 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.64414 * 1 2 3 32 32 H 1.08999 * 109.47517 * 179.63906 * 1 2 3 33 33 H 0.97000 * 119.99854 * 335.16281 * 6 4 2 34 34 H 1.09000 * 109.46920 * 60.00007 * 9 7 6 35 35 H 1.09000 * 109.47490 * 299.99868 * 9 7 6 36 36 H 1.09000 * 109.47194 * 60.00305 * 10 9 7 37 37 H 1.09000 * 109.47020 * 300.00286 * 10 9 7 38 38 H 1.08005 * 119.64588 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.02585 * 180.24302 * 13 12 11 40 40 H 1.08004 * 120.36776 * 179.76211 * 14 13 12 41 41 H 1.07993 * 120.34569 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46199 * 58.65084 * 18 4 2 43 43 H 1.09000 * 109.46241 * 178.62290 * 18 4 2 44 44 H 1.08997 * 109.49761 * 181.31939 * 19 18 4 45 45 H 1.09004 * 109.49698 * 301.41232 * 19 18 4 46 46 H 1.08996 * 109.58934 * 65.15092 * 20 19 18 47 47 H 1.09001 * 109.58138 * 185.57879 * 20 19 18 48 48 H 0.97003 * 120.00432 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7295 1.2453 5 1 1.6029 -1.7254 1.2918 6 7 1.6704 0.0266 2.4435 7 6 1.5503 -0.6045 3.6283 8 8 1.7505 -1.7983 3.7025 9 6 1.1671 0.1734 4.8608 10 6 1.1001 -0.7733 6.0610 11 7 0.7270 -0.0172 7.2590 12 6 1.6964 0.5295 8.0365 13 6 1.3762 1.2363 9.1455 14 6 0.0316 1.4004 9.5068 15 6 -0.9408 0.8459 8.7274 16 6 -0.5734 0.1227 7.5797 17 8 -1.4332 -0.3786 6.8733 18 6 3.5674 -0.8481 1.1701 19 6 3.9568 -1.6658 -0.0635 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6996 -1.1945 22 6 1.1537 -1.1131 -2.1688 23 1 0.1397 -1.3803 -1.9102 24 6 1.5761 -1.1887 -3.4889 25 7 2.6867 -0.5878 -3.8599 26 14 0.5683 -2.1435 -4.7389 27 1 -0.7922 -1.5555 -4.8307 28 1 1.2297 -2.0720 -6.0665 29 1 0.4666 -3.5624 -4.3128 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3634 -1.0276 -0.0065 33 1 1.5099 0.9814 2.3840 34 1 0.1923 0.6371 4.7094 35 1 1.9120 0.9466 5.0487 36 1 2.0746 -1.2373 6.2126 37 1 0.3549 -1.5463 5.8728 38 1 2.7340 0.4026 7.7648 39 1 2.1561 1.6698 9.7540 40 1 -0.2315 1.9598 10.3924 41 1 -1.9821 0.9618 8.9892 42 1 4.0061 0.1472 1.0994 43 1 3.9377 -1.3452 2.0667 44 1 5.0411 -1.7697 -0.1037 45 1 3.4982 -2.6529 -0.0053 46 1 3.9902 0.0020 -1.4317 47 1 3.6518 -1.5718 -2.1971 48 1 2.9818 -0.6404 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486175429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:45 Heat of formation + Delta-G solvation = -20.322399 kcal Electronic energy + Delta-G solvation = -28749.340891 eV Core-core repulsion = 24805.150484 eV Total energy + Delta-G solvation = -3944.190406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65450 -39.81962 -37.75384 -37.16304 -35.36044 -34.33639 -32.64394 -31.83398 -31.28495 -30.13599 -29.14459 -26.43391 -25.45057 -24.92579 -24.01455 -22.72355 -21.82721 -20.71921 -20.20381 -19.35059 -18.04038 -17.62496 -16.96693 -16.47497 -16.42815 -15.98249 -15.59501 -15.49820 -14.90723 -14.82755 -14.45252 -13.91727 -13.86529 -13.69113 -13.47500 -13.26019 -12.89096 -12.75139 -12.68621 -12.54641 -12.30695 -12.07377 -11.73461 -11.55156 -11.47898 -11.12038 -10.92547 -10.76033 -10.59690 -10.52938 -10.32281 -10.20037 -10.15574 -10.06273 -9.93939 -9.63162 -9.38580 -8.71993 -8.46562 -8.31129 -6.68436 -5.81017 -3.25766 0.48361 1.54768 2.26385 2.70766 3.26342 3.38029 3.42156 3.43693 3.47184 4.20250 4.31117 4.47460 4.48444 4.55208 4.73566 4.82637 4.88618 4.97399 5.12074 5.27686 5.37913 5.42424 5.50339 5.56037 5.58277 5.63478 5.74945 5.75757 5.91885 5.93624 6.05925 6.17295 6.19185 6.31636 6.39685 6.49997 6.59356 6.68723 6.72164 6.77140 6.81668 6.97792 7.05196 7.37161 7.63571 7.67286 7.76264 7.80628 8.33009 8.44021 9.18721 9.81148 10.37651 11.27735 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.002255 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.110039 B =12416.314205 C =13016.984504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.086 0.914 6 N -0.716 5.716 7 C 0.518 3.482 8 O -0.543 6.543 9 C -0.156 4.156 10 C 0.106 3.894 11 N -0.496 5.496 12 C 0.136 3.864 13 C -0.238 4.238 14 C -0.018 4.018 15 C -0.245 4.245 16 C 0.509 3.491 17 O -0.547 6.547 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.087 0.913 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 6.729 25.318 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.024 3.976 5 H 0.105 0.895 6 N -0.366 5.366 7 C 0.302 3.698 8 O -0.421 6.421 9 C -0.197 4.197 10 C -0.016 4.016 11 N -0.206 5.206 12 C 0.009 3.991 13 C -0.261 4.261 14 C -0.039 4.039 15 C -0.267 4.267 16 C 0.311 3.689 17 O -0.428 6.428 18 C -0.154 4.154 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.230 0.770 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.105 0.895 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.060 5.518 24.649 25.281 hybrid contribution -0.362 0.198 -0.617 0.742 sum 0.697 5.716 24.032 24.712 Atomic orbital electron populations 1.21819 0.95612 1.01777 1.00235 1.20560 0.93274 0.93509 0.86661 0.95526 1.21825 0.95094 0.96923 0.83748 0.89546 1.46136 1.69759 1.12289 1.08388 1.20158 0.77216 0.87929 0.84460 1.90722 1.50581 1.14960 1.85807 1.21951 1.04722 0.99593 0.93436 1.21740 1.04125 0.94164 0.81534 1.45659 1.07644 1.44265 1.23029 1.22040 0.94495 0.91827 0.90785 1.20660 0.97421 1.07873 1.00127 1.21447 0.92493 0.92810 0.97197 1.22156 1.01537 1.05605 0.97368 1.17233 0.81136 0.82958 0.87563 1.91003 1.47461 1.50633 1.53745 1.21751 0.95352 0.99988 0.98326 1.22189 0.99213 0.99746 0.96894 1.20826 0.83136 0.97156 0.94439 1.44026 1.03128 1.65077 1.18263 1.19114 0.95205 1.37948 0.86004 0.91273 1.25088 0.97905 0.99421 0.96979 1.70015 1.24108 1.43659 1.16846 0.86375 0.79590 0.80293 0.80537 1.20847 1.21653 1.20954 0.94315 0.91743 0.92630 0.76966 0.88084 0.88590 0.88106 0.87135 0.82049 0.83799 0.84888 0.83534 0.92808 0.93256 0.93002 0.92496 0.96278 0.89467 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.84 37.16 0.29 -2.27 16 2 C 0.17 3.33 3.03 -67.60 -0.21 3.13 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.29 1.99 -67.81 -0.14 2.15 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.72 -9.84 4.58 -53.69 -0.25 -10.09 16 7 C 0.52 7.08 7.79 -10.99 -0.09 6.99 16 8 O -0.54 -9.52 15.65 5.56 0.09 -9.43 16 9 C -0.16 -1.51 6.02 -27.88 -0.17 -1.67 16 10 C 0.11 1.05 4.62 -4.04 -0.02 1.03 16 11 N -0.50 -4.46 2.58 -119.77 -0.31 -4.76 16 12 C 0.14 0.76 10.28 -16.84 -0.17 0.59 16 13 C -0.24 -1.14 10.01 -39.88 -0.40 -1.54 16 14 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 15 C -0.24 -2.16 9.99 -39.38 -0.39 -2.55 16 16 C 0.51 6.00 7.41 -15.44 -0.11 5.89 16 17 O -0.55 -8.82 16.64 4.87 0.08 -8.74 16 18 C -0.12 -2.01 5.46 -26.69 -0.15 -2.15 16 19 C -0.14 -2.72 6.08 -26.61 -0.16 -2.89 16 20 C 0.17 3.97 5.28 -3.71 -0.02 3.95 16 21 N -0.58 -14.07 2.99 -164.78 -0.49 -14.56 16 22 C -0.25 -6.73 8.58 -15.06 -0.13 -6.86 16 23 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 24 C 0.00 0.13 4.94 -17.43 -0.09 0.05 16 25 N -0.90 -25.67 11.23 55.49 0.62 -25.05 16 26 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.04 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.06 1.29 7.67 -51.93 -0.40 0.89 16 32 H 0.05 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.40 4.42 8.60 -40.82 -0.35 4.06 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.83 7.97 -51.93 -0.41 0.42 16 37 H 0.11 1.42 7.34 -51.93 -0.38 1.04 16 38 H 0.16 0.40 8.03 -52.48 -0.42 -0.03 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 2.29 6.15 -51.93 -0.32 1.97 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -34.19 386.37 -9.38 -43.58 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.58 Total: 3.34 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.34 Total: 3.35 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.42 Total: -54.47 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.19 -9.38 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486175429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.255 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds