Wall clock time and date at job start Tue Mar 31 2020 17:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.70558 * 2 1 4 4 C 1.53188 * 109.58375 * 120.36166 * 2 1 3 5 5 H 1.08998 * 109.53124 * 54.44996 * 4 2 1 6 6 N 1.46506 * 109.49551 * 294.37127 * 4 2 1 7 7 C 1.34774 * 120.00114 * 155.16672 * 6 4 2 8 8 O 1.21281 * 120.00037 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99954 * 179.97438 * 7 6 4 10 10 C 1.53004 * 109.46955 * 179.97438 * 9 7 6 11 11 N 1.46497 * 109.46921 * 180.02562 * 10 9 7 12 12 C 1.35763 * 119.62523 * 269.72083 * 11 10 9 13 13 C 1.35347 * 120.70119 * 179.76051 * 12 11 10 14 14 C 1.40197 * 119.94888 * 0.51494 * 13 12 11 15 15 C 1.36397 * 119.26618 * 359.74724 * 14 13 12 16 16 C 1.34664 * 119.62489 * 90.00222 * 11 10 9 17 17 O 1.22056 * 119.98282 * 359.97438 * 16 11 10 18 18 C 1.53041 * 109.31246 * 174.42423 * 4 2 1 19 19 C 1.53042 * 109.53482 * 298.62945 * 18 4 2 20 20 C 1.53194 * 109.31161 * 61.36752 * 19 18 4 21 21 N 1.46924 * 108.77338 * 305.36026 * 20 19 18 22 22 C 1.36937 * 120.63171 * 233.60848 * 21 20 19 23 23 H 1.08004 * 120.00073 * 150.16429 * 22 21 20 24 24 C 1.38806 * 120.00233 * 330.16367 * 22 21 20 25 25 N 1.31620 * 119.99938 * 344.50009 * 24 22 21 26 26 Si 1.86800 * 120.00375 * 164.49735 * 24 22 21 27 27 H 1.48504 * 109.46739 * 60.00008 * 26 24 22 28 28 H 1.48497 * 109.47277 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47161 * 300.00293 * 26 24 22 30 30 H 1.09003 * 109.47529 * 299.64330 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.64414 * 1 2 3 32 32 H 1.08999 * 109.47517 * 179.63906 * 1 2 3 33 33 H 0.97000 * 119.99854 * 335.16281 * 6 4 2 34 34 H 1.09000 * 109.46920 * 60.00007 * 9 7 6 35 35 H 1.09000 * 109.47490 * 299.99868 * 9 7 6 36 36 H 1.09000 * 109.47194 * 60.00305 * 10 9 7 37 37 H 1.09000 * 109.47020 * 300.00286 * 10 9 7 38 38 H 1.08005 * 119.64588 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.02585 * 180.24302 * 13 12 11 40 40 H 1.08004 * 120.36776 * 179.76211 * 14 13 12 41 41 H 1.07993 * 120.34569 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46199 * 58.65084 * 18 4 2 43 43 H 1.09000 * 109.46241 * 178.62290 * 18 4 2 44 44 H 1.08997 * 109.49761 * 181.31939 * 19 18 4 45 45 H 1.09004 * 109.49698 * 301.41232 * 19 18 4 46 46 H 1.08996 * 109.58934 * 65.15092 * 20 19 18 47 47 H 1.09001 * 109.58138 * 185.57879 * 20 19 18 48 48 H 0.97003 * 120.00432 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7295 1.2453 5 1 1.6029 -1.7254 1.2918 6 7 1.6704 0.0266 2.4435 7 6 1.5503 -0.6045 3.6283 8 8 1.7505 -1.7983 3.7025 9 6 1.1671 0.1734 4.8608 10 6 1.1001 -0.7733 6.0610 11 7 0.7270 -0.0172 7.2590 12 6 1.6964 0.5295 8.0365 13 6 1.3762 1.2363 9.1455 14 6 0.0316 1.4004 9.5068 15 6 -0.9408 0.8459 8.7274 16 6 -0.5734 0.1227 7.5797 17 8 -1.4332 -0.3786 6.8733 18 6 3.5674 -0.8481 1.1701 19 6 3.9568 -1.6658 -0.0635 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6996 -1.1945 22 6 1.1537 -1.1131 -2.1688 23 1 0.1397 -1.3803 -1.9102 24 6 1.5761 -1.1887 -3.4889 25 7 2.6867 -0.5878 -3.8599 26 14 0.5683 -2.1435 -4.7389 27 1 -0.7922 -1.5555 -4.8307 28 1 1.2297 -2.0720 -6.0665 29 1 0.4666 -3.5624 -4.3128 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3634 -1.0276 -0.0065 33 1 1.5099 0.9814 2.3840 34 1 0.1923 0.6371 4.7094 35 1 1.9120 0.9466 5.0487 36 1 2.0746 -1.2373 6.2126 37 1 0.3549 -1.5463 5.8728 38 1 2.7340 0.4026 7.7648 39 1 2.1561 1.6698 9.7540 40 1 -0.2315 1.9598 10.3924 41 1 -1.9821 0.9618 8.9892 42 1 4.0061 0.1472 1.0994 43 1 3.9377 -1.3452 2.0667 44 1 5.0411 -1.7697 -0.1037 45 1 3.4982 -2.6529 -0.0053 46 1 3.9902 0.0020 -1.4317 47 1 3.6518 -1.5718 -2.1971 48 1 2.9818 -0.6404 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486175429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:44 Heat of formation + Delta-G solvation = -42.795715 kcal Electronic energy + Delta-G solvation = -28750.315407 eV Core-core repulsion = 24805.150484 eV Total energy + Delta-G solvation = -3945.164922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34312 -41.06170 -39.28863 -37.95196 -36.12810 -35.79782 -34.28248 -33.44970 -32.31817 -30.87357 -30.58838 -27.96385 -26.94664 -26.20472 -24.63893 -23.88121 -22.96683 -22.33639 -21.41922 -20.95587 -18.84417 -18.26274 -18.26132 -17.81684 -17.37119 -17.09542 -16.82365 -16.58288 -16.36603 -15.63294 -15.61576 -15.42198 -15.16913 -14.96790 -14.72535 -14.67531 -14.29012 -14.11179 -13.77494 -13.36247 -13.25793 -13.21205 -12.82991 -12.80858 -12.72697 -12.68057 -12.55451 -12.39792 -12.25334 -12.03648 -11.84556 -11.76695 -11.62765 -11.22974 -11.15060 -10.99421 -10.81883 -10.53415 -10.01204 -8.94071 -8.65209 -7.87148 -5.33248 -0.03644 0.96242 1.45252 1.47927 1.53351 1.55368 1.61867 2.22796 2.53008 2.73273 3.28276 3.56343 3.64258 3.68311 3.79861 3.88573 3.97995 4.01726 4.07853 4.21862 4.22607 4.34100 4.35950 4.40010 4.50815 4.53715 4.60967 4.71713 4.76244 4.80120 4.87760 4.91471 5.04106 5.12290 5.13728 5.22796 5.24510 5.28356 5.42175 5.44823 5.49208 5.59320 5.69335 5.71073 5.76324 6.14198 6.40913 6.56793 7.02039 7.15527 7.25697 7.85787 8.36969 9.19466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.002255 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.110039 B =12416.314205 C =13016.984504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.146 3.854 5 H 0.054 0.946 6 N -0.707 5.707 7 C 0.519 3.481 8 O -0.583 6.583 9 C -0.140 4.140 10 C 0.109 3.891 11 N -0.492 5.492 12 C 0.130 3.870 13 C -0.228 4.228 14 C 0.008 3.992 15 C -0.284 4.284 16 C 0.490 3.510 17 O -0.615 6.615 18 C -0.106 4.106 19 C -0.131 4.131 20 C 0.176 3.824 21 N -0.601 5.601 22 C -0.255 4.255 23 H 0.068 0.932 24 C -0.047 4.047 25 N -0.931 5.931 26 Si 0.960 3.040 27 H -0.276 1.276 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.414 0.586 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.141 0.859 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.006 0.994 47 H 0.052 0.948 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 8.661 28.464 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.054 0.946 4 C 0.039 3.961 5 H 0.072 0.928 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.463 6.463 9 C -0.180 4.180 10 C -0.013 4.013 11 N -0.201 5.201 12 C 0.004 3.996 13 C -0.250 4.250 14 C -0.014 4.014 15 C -0.305 4.305 16 C 0.296 3.704 17 O -0.503 6.503 18 C -0.145 4.145 19 C -0.170 4.170 20 C 0.050 3.950 21 N -0.325 5.325 22 C -0.385 4.385 23 H 0.086 0.914 24 C -0.243 4.243 25 N -0.577 5.577 26 Si 0.788 3.212 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.210 1.210 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.250 0.750 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.219 0.781 39 H 0.201 0.799 40 H 0.184 0.816 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.690 7.501 27.857 28.975 hybrid contribution -0.790 -0.347 -1.441 1.679 sum 1.900 7.154 26.417 27.434 Atomic orbital electron populations 1.21733 0.94882 1.00861 1.01144 1.20719 0.93943 0.93626 0.85918 0.94641 1.21293 0.95160 0.95374 0.84287 0.92814 1.45918 1.69678 1.12905 1.07279 1.20788 0.75923 0.87567 0.85168 1.90715 1.52226 1.16968 1.86401 1.21860 1.05553 0.99622 0.90969 1.21612 1.03741 0.93651 0.82329 1.45578 1.07554 1.43963 1.22990 1.22804 0.95350 0.90997 0.90443 1.21206 0.97718 1.06414 0.99669 1.21888 0.92375 0.90360 0.96799 1.22100 1.02408 1.08042 0.97970 1.17723 0.81576 0.83080 0.88057 1.90952 1.49348 1.53946 1.56027 1.21663 0.94941 1.00454 0.97424 1.22029 1.00388 0.98684 0.95934 1.20639 0.83077 0.96177 0.95093 1.44265 1.03208 1.65903 1.19116 1.19361 0.95457 1.37025 0.86695 0.91434 1.25749 0.99127 1.00721 0.98660 1.70148 1.25592 1.45238 1.16727 0.85463 0.78482 0.78954 0.78284 1.20152 1.21931 1.20951 0.90883 0.93324 0.94382 0.74986 0.88557 0.84368 0.86019 0.91113 0.78132 0.79947 0.81622 0.84124 0.91247 0.92164 0.90719 0.93996 0.97567 0.92946 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 7.84 71.98 0.56 -4.20 16 2 C 0.16 6.45 3.03 44.97 0.14 6.59 16 3 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.15 5.00 1.99 45.07 0.09 5.09 16 5 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 6 N -0.71 -17.92 4.58 -442.16 -2.02 -19.94 16 7 C 0.52 13.31 7.79 87.66 0.68 13.99 16 8 O -0.58 -20.13 15.65 -3.03 -0.05 -20.18 16 9 C -0.14 -2.37 6.02 29.85 0.18 -2.19 16 10 C 0.11 2.03 4.62 86.38 0.40 2.43 16 11 N -0.49 -8.01 2.58 -650.97 -1.68 -9.69 16 12 C 0.13 0.88 10.28 83.42 0.86 1.74 16 13 C -0.23 -1.03 10.01 22.08 0.22 -0.80 16 14 C 0.01 0.06 10.10 22.32 0.23 0.29 16 15 C -0.28 -4.86 9.99 22.40 0.22 -4.64 16 16 C 0.49 11.77 7.41 84.82 0.63 12.39 16 17 O -0.61 -21.40 16.64 -5.50 -0.09 -21.49 16 18 C -0.11 -3.50 5.46 30.62 0.17 -3.33 16 19 C -0.13 -5.01 6.08 30.67 0.19 -4.82 16 20 C 0.18 8.36 5.28 86.36 0.46 8.82 16 21 N -0.60 -29.52 2.99 -675.24 -2.02 -31.54 16 22 C -0.26 -13.84 8.58 84.03 0.72 -13.12 16 23 H 0.07 3.61 6.23 -2.91 -0.02 3.60 16 24 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 25 N -0.93 -54.44 11.23 21.65 0.24 -54.20 16 26 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 30 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 31 H 0.05 1.93 7.67 -2.39 -0.02 1.92 16 32 H 0.04 1.52 7.40 -2.39 -0.02 1.50 16 33 H 0.41 7.89 8.60 -92.71 -0.80 7.09 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.72 7.97 -2.39 -0.02 1.70 16 37 H 0.07 1.92 7.34 -2.39 -0.02 1.90 16 38 H 0.20 -0.25 8.03 -2.91 -0.02 -0.27 16 39 H 0.18 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.05 2.85 6.15 -2.39 -0.01 2.83 16 48 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -81.03 386.37 2.73 -78.29 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.16 Total: 15.35 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.16 Total: 16.04 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -5.48 Total: -115.37 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.14 Total: -41.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -81.03 2.73 -78.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486175429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.498 kcal (2) G-P(sol) polarization free energy of solvation -81.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds