Wall clock time and date at job start Tue Mar 31 2020 18:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50701 * 109.46980 * 240.00332 * 2 1 3 5 5 O 1.21281 * 119.99578 * 253.81050 * 4 2 1 6 6 N 1.34775 * 120.00477 * 73.81614 * 4 2 1 7 7 C 1.46507 * 119.99598 * 3.74189 * 6 4 2 8 8 C 1.46500 * 120.00618 * 183.74242 * 6 4 2 9 9 C 1.52996 * 109.47009 * 89.99801 * 8 6 4 10 10 N 1.46891 * 109.47186 * 180.02562 * 9 8 6 11 11 C 1.46906 * 111.00279 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47134 * 179.97438 * 11 10 9 13 13 O 1.21292 * 120.00044 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00224 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99925 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00112 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47354 * 119.99910 * 19 17 15 22 22 H 1.48505 * 109.46809 * 239.99577 * 19 17 15 23 23 C 1.50693 * 109.47321 * 120.00242 * 2 1 3 24 24 C 1.38235 * 120.00316 * 239.99931 * 23 2 1 25 25 C 1.38231 * 120.00187 * 180.02562 * 24 23 2 26 26 C 1.38229 * 120.00256 * 359.96093 * 25 24 23 27 27 C 1.38238 * 119.99799 * 0.27135 * 26 25 24 28 28 C 1.38236 * 119.99953 * 359.53952 * 27 26 25 29 29 H 1.09002 * 109.47525 * 296.04349 * 1 2 3 30 30 H 1.09010 * 109.47145 * 56.04049 * 1 2 3 31 31 H 1.08999 * 109.47317 * 176.04201 * 1 2 3 32 32 H 1.09005 * 109.47354 * 84.67487 * 7 6 4 33 33 H 1.08998 * 109.46826 * 204.67485 * 7 6 4 34 34 H 1.08996 * 109.47287 * 324.67803 * 7 6 4 35 35 H 1.08996 * 109.47380 * 209.99786 * 8 6 4 36 36 H 1.09000 * 109.46903 * 329.99840 * 8 6 4 37 37 H 1.09003 * 109.47581 * 300.00574 * 9 8 6 38 38 H 1.09000 * 109.47256 * 60.00255 * 9 8 6 39 39 H 1.00898 * 111.00650 * 56.04583 * 10 9 8 40 40 H 1.08997 * 109.47070 * 299.99855 * 11 10 9 41 41 H 1.09002 * 109.46814 * 59.99659 * 11 10 9 42 42 H 0.97003 * 120.00252 * 359.97438 * 14 12 11 43 43 H 0.97000 * 120.00146 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99649 * 0.02562 * 24 23 2 45 45 H 1.08006 * 120.00088 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00452 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.00072 * 179.72722 * 27 26 25 48 48 H 1.07999 * 119.99801 * 180.20768 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.5105 -1.8209 -1.1368 6 7 1.9502 -0.1115 -2.4351 7 6 1.4487 1.2612 -2.5380 8 6 2.3624 -0.8331 -3.6416 9 6 1.1630 -1.5867 -4.2199 10 7 1.5764 -2.3107 -5.4292 11 6 0.4476 -3.0473 -6.0136 12 6 0.9089 -3.7753 -7.2499 13 8 2.0644 -3.6895 -7.6086 14 7 0.0375 -4.5218 -7.9569 15 6 0.4572 -5.1845 -9.0812 16 1 1.4861 -5.1081 -9.4006 17 6 -0.4413 -5.9537 -9.8104 18 7 -1.6933 -6.0463 -9.4221 19 14 0.1304 -6.8562 -11.3428 20 1 1.5746 -6.5904 -11.5638 21 1 -0.0837 -8.3150 -11.1670 22 1 -0.6454 -6.3799 -12.5161 23 6 2.0323 -0.7104 1.2304 24 6 2.8271 -0.0387 2.1403 25 6 3.2883 -0.6906 3.2687 26 6 2.9542 -2.0139 3.4875 27 6 2.1634 -2.6871 2.5752 28 6 1.6989 -2.0341 1.4488 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 2.2648 1.9608 -2.3567 33 1 1.0439 1.4262 -3.5365 34 1 0.6645 1.4181 -1.7974 35 1 2.7357 -0.1233 -4.3798 36 1 3.1501 -1.5429 -3.3891 37 1 0.7895 -2.2965 -3.4817 38 1 0.3752 -0.8769 -4.4723 39 1 2.3497 -2.9288 -5.2342 40 1 0.0686 -3.7669 -5.2879 41 1 -0.3446 -2.3472 -6.2790 42 1 -0.8865 -4.5907 -7.6698 43 1 -2.3205 -6.5835 -9.9309 44 1 3.0876 0.9954 1.9697 45 1 3.9096 -0.1658 3.9794 46 1 3.3142 -2.5231 4.3693 47 1 1.9059 -3.7222 2.7439 48 1 1.0783 -2.5591 0.7377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493764099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:13 Heat of formation + Delta-G solvation = -41.889790 kcal Electronic energy + Delta-G solvation = -27582.266951 eV Core-core repulsion = 23637.141313 eV Total energy + Delta-G solvation = -3945.125639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.74942 -39.05613 -38.26072 -36.39384 -35.14711 -34.38396 -33.76997 -31.22940 -31.12247 -30.25084 -29.26565 -27.14229 -26.20883 -24.80890 -23.87625 -22.81349 -22.45540 -21.36226 -19.44640 -19.05776 -17.87475 -17.39502 -17.12528 -16.36751 -16.32874 -15.63141 -15.47332 -15.32512 -14.97666 -14.55779 -14.42312 -14.16390 -13.93335 -13.68637 -13.52464 -13.50287 -13.33376 -13.11902 -12.95092 -12.82058 -12.49405 -12.28391 -12.11059 -12.06416 -11.81975 -11.50507 -11.48796 -11.23275 -11.18833 -11.11142 -10.97181 -10.33070 -10.21254 -9.91286 -9.50734 -9.08800 -8.97070 -8.93119 -8.44309 -8.07063 -7.94676 -6.40446 -3.81153 1.09029 1.22127 2.39456 2.71370 3.17549 3.27957 3.35592 3.57805 3.92431 4.12257 4.16957 4.24636 4.46146 4.60168 4.69485 4.74571 4.82475 4.85074 4.92961 4.98099 4.99964 5.17113 5.18859 5.24475 5.25866 5.28573 5.29663 5.40295 5.47140 5.51411 5.70478 5.74224 5.78234 5.83743 5.86367 5.91206 5.99782 6.21112 6.23798 6.31125 6.32108 6.38582 6.77359 7.12367 7.18969 7.56844 7.64599 7.95741 8.07977 8.62705 9.19351 9.55753 10.07209 10.77432 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.001813 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.188686 B =15441.389568 C =16001.002589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 H 0.100 0.900 4 C 0.517 3.483 5 O -0.526 6.526 6 N -0.614 5.614 7 C 0.068 3.932 8 C 0.116 3.884 9 C 0.047 3.953 10 N -0.667 5.667 11 C 0.053 3.947 12 C 0.441 3.559 13 O -0.582 6.582 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.074 4.074 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.078 4.078 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.351 0.649 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 16.373 25.407 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 H 0.118 0.882 4 C 0.304 3.696 5 O -0.401 6.401 6 N -0.348 5.348 7 C -0.075 4.075 8 C -0.007 4.007 9 C -0.084 4.084 10 N -0.300 5.300 11 C -0.080 4.080 12 C 0.227 3.773 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.074 4.074 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.096 4.096 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.170 0.830 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.964 16.270 24.693 29.719 hybrid contribution -0.561 -1.169 -0.063 1.298 sum 2.403 15.102 24.630 28.990 Atomic orbital electron populations 1.21875 0.91729 1.03417 1.03053 1.20271 0.97880 1.00041 0.90918 0.88163 1.20508 0.78455 0.86380 0.84218 1.90736 1.43909 1.19735 1.85695 1.47791 1.65298 1.15080 1.06633 1.22032 0.99506 0.82055 1.03885 1.21431 0.97117 0.96917 0.85210 1.22249 0.97572 0.97461 0.91079 1.60008 1.09014 1.33599 1.27370 1.21654 0.93824 0.96611 0.95922 1.19796 0.86950 0.84061 0.86511 1.90523 1.18539 1.66296 1.71300 1.41865 1.11396 1.42504 1.24330 1.19764 0.97545 1.24109 1.01379 0.87837 1.25269 0.95029 0.98026 0.99702 1.69620 1.03175 1.41027 1.40541 0.85793 0.79022 0.78758 0.80728 1.19201 1.20779 1.20751 1.19325 0.98677 0.94595 0.94805 1.20987 0.97790 0.99727 0.94627 1.21058 1.00541 0.95084 0.97741 1.21158 0.98403 0.94840 0.99360 1.21165 0.98401 0.99941 0.94627 1.20987 0.98705 0.93708 0.96218 0.90990 0.91147 0.91641 0.92393 0.90258 0.90598 0.89322 0.89687 0.95280 0.91148 0.82950 0.93851 0.89635 0.77464 0.91942 0.86256 0.86169 0.86253 0.86083 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.68 37.15 0.32 -0.59 16 2 C -0.07 -0.56 2.07 -92.93 -0.19 -0.75 16 3 H 0.10 0.58 7.22 -51.93 -0.37 0.21 16 4 C 0.52 5.81 6.84 -10.99 -0.08 5.74 16 5 O -0.53 -8.06 14.25 5.56 0.08 -7.98 16 6 N -0.61 -5.95 2.87 -181.57 -0.52 -6.47 16 7 C 0.07 0.40 9.86 59.85 0.59 0.99 16 8 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 9 C 0.05 0.62 6.01 -3.83 -0.02 0.60 16 10 N -0.67 -11.22 6.12 -115.06 -0.70 -11.92 16 11 C 0.05 0.97 6.17 -4.97 -0.03 0.93 16 12 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 13 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 14 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 15 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 16 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 19 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.07 -0.71 4.54 -104.63 -0.47 -1.18 16 24 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 25 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 28 C -0.08 -0.83 7.88 -39.58 -0.31 -1.15 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.35 5.80 -51.92 -0.30 0.05 16 31 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.43 8.03 -51.93 -0.42 0.01 16 34 H 0.08 0.31 4.55 -51.93 -0.24 0.08 16 35 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.08 1.15 7.37 -51.93 -0.38 0.77 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.35 6.24 8.43 -39.29 -0.33 5.91 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.12 0.74 7.95 -52.49 -0.42 0.33 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.36 7.22 -52.49 -0.38 0.98 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -34.67 397.33 -8.84 -43.51 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.29 Total: 12.82 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.12 Total: 2.61 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.56 Total: -57.14 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.67 -8.84 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493764099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.623 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds