Wall clock time and date at job start Tue Mar 31 2020 18:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50701 * 109.46980 * 240.00332 * 2 1 3 5 5 O 1.21281 * 119.99578 * 253.81050 * 4 2 1 6 6 N 1.34775 * 120.00477 * 73.81614 * 4 2 1 7 7 C 1.46507 * 119.99598 * 3.74189 * 6 4 2 8 8 C 1.46500 * 120.00618 * 183.74242 * 6 4 2 9 9 C 1.52996 * 109.47009 * 89.99801 * 8 6 4 10 10 N 1.46891 * 109.47186 * 180.02562 * 9 8 6 11 11 C 1.46906 * 111.00279 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47134 * 179.97438 * 11 10 9 13 13 O 1.21292 * 120.00044 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00224 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99925 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00096 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00112 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47354 * 119.99910 * 19 17 15 22 22 H 1.48505 * 109.46809 * 239.99577 * 19 17 15 23 23 C 1.50693 * 109.47321 * 120.00242 * 2 1 3 24 24 C 1.38235 * 120.00316 * 239.99931 * 23 2 1 25 25 C 1.38231 * 120.00187 * 180.02562 * 24 23 2 26 26 C 1.38229 * 120.00256 * 359.96093 * 25 24 23 27 27 C 1.38238 * 119.99799 * 0.27135 * 26 25 24 28 28 C 1.38236 * 119.99953 * 359.53952 * 27 26 25 29 29 H 1.09002 * 109.47525 * 296.04349 * 1 2 3 30 30 H 1.09010 * 109.47145 * 56.04049 * 1 2 3 31 31 H 1.08999 * 109.47317 * 176.04201 * 1 2 3 32 32 H 1.09005 * 109.47354 * 84.67487 * 7 6 4 33 33 H 1.08998 * 109.46826 * 204.67485 * 7 6 4 34 34 H 1.08996 * 109.47287 * 324.67803 * 7 6 4 35 35 H 1.08996 * 109.47380 * 209.99786 * 8 6 4 36 36 H 1.09000 * 109.46903 * 329.99840 * 8 6 4 37 37 H 1.09003 * 109.47581 * 300.00574 * 9 8 6 38 38 H 1.09000 * 109.47256 * 60.00255 * 9 8 6 39 39 H 1.00898 * 111.00650 * 56.04583 * 10 9 8 40 40 H 1.08997 * 109.47070 * 299.99855 * 11 10 9 41 41 H 1.09002 * 109.46814 * 59.99659 * 11 10 9 42 42 H 0.97003 * 120.00252 * 359.97438 * 14 12 11 43 43 H 0.97000 * 120.00146 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99649 * 0.02562 * 24 23 2 45 45 H 1.08006 * 120.00088 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00452 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.00072 * 179.72722 * 27 26 25 48 48 H 1.07999 * 119.99801 * 180.20768 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.5105 -1.8209 -1.1368 6 7 1.9502 -0.1115 -2.4351 7 6 1.4487 1.2612 -2.5380 8 6 2.3624 -0.8331 -3.6416 9 6 1.1630 -1.5867 -4.2199 10 7 1.5764 -2.3107 -5.4292 11 6 0.4476 -3.0473 -6.0136 12 6 0.9089 -3.7753 -7.2499 13 8 2.0644 -3.6895 -7.6086 14 7 0.0375 -4.5218 -7.9569 15 6 0.4572 -5.1845 -9.0812 16 1 1.4861 -5.1081 -9.4006 17 6 -0.4413 -5.9537 -9.8104 18 7 -1.6933 -6.0463 -9.4221 19 14 0.1304 -6.8562 -11.3428 20 1 1.5746 -6.5904 -11.5638 21 1 -0.0837 -8.3150 -11.1670 22 1 -0.6454 -6.3799 -12.5161 23 6 2.0323 -0.7104 1.2304 24 6 2.8271 -0.0387 2.1403 25 6 3.2883 -0.6906 3.2687 26 6 2.9542 -2.0139 3.4875 27 6 2.1634 -2.6871 2.5752 28 6 1.6989 -2.0341 1.4488 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 2.2648 1.9608 -2.3567 33 1 1.0439 1.4262 -3.5365 34 1 0.6645 1.4181 -1.7974 35 1 2.7357 -0.1233 -4.3798 36 1 3.1501 -1.5429 -3.3891 37 1 0.7895 -2.2965 -3.4817 38 1 0.3752 -0.8769 -4.4723 39 1 2.3497 -2.9288 -5.2342 40 1 0.0686 -3.7669 -5.2879 41 1 -0.3446 -2.3472 -6.2790 42 1 -0.8865 -4.5907 -7.6698 43 1 -2.3205 -6.5835 -9.9309 44 1 3.0876 0.9954 1.9697 45 1 3.9096 -0.1658 3.9794 46 1 3.3142 -2.5231 4.3693 47 1 1.9059 -3.7222 2.7439 48 1 1.0783 -2.5591 0.7377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493764099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:12 Heat of formation + Delta-G solvation = -65.854343 kcal Electronic energy + Delta-G solvation = -27583.306132 eV Core-core repulsion = 23637.141313 eV Total energy + Delta-G solvation = -3946.164820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.52246 -40.20704 -39.72729 -37.51228 -36.29269 -35.80988 -35.06271 -33.30106 -31.77387 -31.23604 -30.08047 -28.08080 -27.45722 -26.03355 -25.07577 -23.57855 -23.40782 -22.15669 -21.15163 -20.07458 -19.85537 -18.17131 -17.93280 -17.81035 -17.14874 -17.08928 -16.51149 -16.41793 -16.12267 -15.90877 -15.59309 -15.37322 -15.12151 -14.93522 -14.64361 -14.29530 -14.16038 -14.05540 -13.89688 -13.59855 -13.53803 -13.40493 -13.33148 -13.13146 -12.96495 -12.78787 -12.68121 -12.43190 -12.38733 -12.12253 -12.09867 -11.87244 -11.78174 -11.53769 -10.75723 -10.41822 -10.04352 -9.76537 -9.71541 -9.62518 -9.46295 -8.48865 -5.97947 0.42579 0.54449 1.35533 1.40919 1.55303 1.57213 1.93235 2.01245 2.28512 2.88026 2.97966 3.17902 3.45941 3.54510 3.68518 3.93284 4.04016 4.10486 4.13766 4.21425 4.26531 4.27901 4.31230 4.33409 4.44025 4.47025 4.54404 4.61463 4.66765 4.68063 4.77132 4.79825 4.89853 4.93514 5.00461 5.12248 5.17757 5.28223 5.39146 5.45986 5.58425 5.64832 5.70763 5.81308 6.03581 6.13069 6.24224 6.37943 6.57013 7.09895 7.14647 7.52536 8.07691 8.68787 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.001813 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.188686 B =15441.389568 C =16001.002589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 H 0.131 0.869 4 C 0.510 3.490 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.060 3.940 8 C 0.122 3.878 9 C 0.057 3.943 10 N -0.676 5.676 11 C 0.067 3.933 12 C 0.437 3.563 13 O -0.623 6.623 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.995 3.005 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.087 4.087 24 C -0.118 4.118 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.101 4.101 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.090 0.910 39 H 0.342 0.658 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.126 0.874 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 18.572 26.197 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 H 0.149 0.851 4 C 0.299 3.701 5 O -0.456 6.456 6 N -0.343 5.343 7 C -0.081 4.081 8 C -0.002 4.002 9 C -0.073 4.073 10 N -0.308 5.308 11 C -0.066 4.066 12 C 0.225 3.775 13 O -0.509 6.509 14 N -0.209 5.209 15 C -0.465 4.465 16 H 0.097 0.903 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.818 3.182 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.087 4.087 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.160 4.160 28 C -0.119 4.119 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.109 0.891 39 H 0.160 0.840 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.157 0.843 47 H 0.144 0.856 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.279 18.518 25.499 31.596 hybrid contribution -0.349 -1.821 -0.261 1.872 sum 1.930 16.697 25.238 30.322 Atomic orbital electron populations 1.21875 0.90459 1.02667 1.04663 1.20326 0.98776 1.00742 0.88466 0.85120 1.21167 0.77631 0.85912 0.85402 1.90716 1.46304 1.22112 1.86517 1.47883 1.64632 1.16326 1.05437 1.22343 1.00772 0.79799 1.05201 1.21235 0.95820 0.96832 0.86288 1.22254 0.98632 0.97150 0.89286 1.60042 1.08344 1.33179 1.29263 1.21526 0.94609 0.97058 0.93387 1.20810 0.86148 0.83121 0.87459 1.90491 1.20303 1.67436 1.72686 1.41925 1.11833 1.42910 1.24238 1.19723 0.97035 1.26384 1.03316 0.90288 1.26074 0.95008 0.98043 1.02199 1.69676 1.03787 1.41101 1.41508 0.84844 0.78228 0.77861 0.77224 1.19814 1.19601 1.19403 1.19574 0.99051 0.94351 0.95758 1.21342 0.97008 1.00978 0.94294 1.21447 1.00270 0.94992 0.98114 1.21454 0.97972 0.95401 0.99706 1.21366 0.99118 1.00517 0.94955 1.21009 0.99662 0.94748 0.96529 0.89476 0.89305 0.93669 0.90647 0.89441 0.88506 0.88083 0.92297 0.96429 0.89146 0.83984 0.92253 0.87206 0.76938 0.91233 0.83620 0.83641 0.84306 0.85628 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.68 71.98 0.62 -0.90 16 2 C -0.06 -0.90 2.07 -12.29 -0.03 -0.92 16 3 H 0.13 1.06 7.22 -2.38 -0.02 1.04 16 4 C 0.51 11.24 6.84 87.66 0.60 11.84 16 5 O -0.58 -18.55 14.25 -3.03 -0.04 -18.59 16 6 N -0.61 -10.94 2.87 -846.76 -2.43 -13.37 16 7 C 0.06 0.50 9.86 127.77 1.26 1.76 16 8 C 0.12 2.78 5.67 86.38 0.49 3.27 16 9 C 0.06 1.44 6.01 86.30 0.52 1.96 16 10 N -0.68 -22.58 6.12 -517.94 -3.17 -25.75 16 11 C 0.07 2.40 6.17 85.56 0.53 2.93 16 12 C 0.44 21.52 7.82 87.66 0.69 22.20 16 13 O -0.62 -35.58 15.78 -3.07 -0.05 -35.63 16 14 N -0.57 -30.10 5.29 -306.99 -1.62 -31.72 16 15 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 16 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 17 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 18 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 19 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 C -0.09 -1.62 4.54 -19.87 -0.09 -1.71 16 24 C -0.12 -1.78 9.67 22.27 0.22 -1.57 16 25 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 26 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 27 C -0.14 -2.84 10.05 22.27 0.22 -2.61 16 28 C -0.10 -2.28 7.88 22.27 0.18 -2.10 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.61 5.80 -2.38 -0.01 0.60 16 31 H 0.04 0.69 7.53 -2.39 -0.02 0.67 16 32 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.09 0.64 8.03 -2.39 -0.02 0.62 16 34 H 0.10 0.41 4.55 -2.39 -0.01 0.40 16 35 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.06 1.66 7.37 -2.39 -0.02 1.65 16 37 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.34 12.49 8.43 -89.70 -0.76 11.74 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.40 19.76 7.90 -92.71 -0.73 19.02 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.15 1.32 7.95 -2.91 -0.02 1.30 16 45 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 47 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 48 H 0.10 2.58 7.22 -2.91 -0.02 2.56 16 Total: -1.00 -77.87 397.33 1.42 -76.45 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.51 Total: 41.25 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.93 Total: 11.74 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.95 Total: -120.76 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.09 Total: -54.23 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -77.87 1.42 -76.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493764099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.597 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds