Wall clock time and date at job start Tue Mar 31 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46644 * 2 1 4 4 C 1.50693 * 109.47288 * 119.99952 * 2 1 3 5 5 O 1.21280 * 120.00035 * 120.00422 * 4 2 1 6 6 N 1.34776 * 120.00204 * 300.00384 * 4 2 1 7 7 C 1.46503 * 120.00363 * 174.69134 * 6 4 2 8 8 C 1.53000 * 109.54577 * 304.16892 * 7 6 4 9 9 N 1.46504 * 109.46821 * 305.56823 * 8 7 6 10 10 C 1.36932 * 119.99654 * 175.01837 * 9 8 7 11 11 H 1.07996 * 120.00585 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99629 * 180.02562 * 10 9 8 13 13 N 1.31624 * 120.00068 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99988 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47065 * 90.00207 * 14 12 10 16 16 H 1.48503 * 109.46979 * 209.99947 * 14 12 10 17 17 H 1.48498 * 109.47408 * 329.99776 * 14 12 10 18 18 C 1.53172 * 109.54586 * 183.98467 * 7 6 4 19 19 C 1.53283 * 109.06515 * 297.03279 * 18 7 6 20 20 O 1.42903 * 109.46397 * 302.44185 * 19 18 7 21 21 C 1.42902 * 114.09296 * 61.15677 * 20 19 18 22 22 C 1.53089 * 109.41949 * 298.84306 * 21 20 19 23 23 C 1.50693 * 109.47223 * 240.00340 * 2 1 3 24 24 C 1.38675 * 120.42103 * 120.00064 * 23 2 1 25 25 C 1.38626 * 118.42404 * 180.02562 * 24 23 2 26 26 C 1.38221 * 119.16007 * 359.97438 * 25 24 23 27 27 N 1.31860 * 120.76486 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72502 * 359.69956 * 27 26 25 29 29 H 1.09000 * 109.47394 * 299.99785 * 1 2 3 30 30 H 1.09003 * 109.47219 * 60.00307 * 1 2 3 31 31 H 1.09007 * 109.46644 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00307 * 354.69878 * 6 4 2 33 33 H 1.08998 * 109.47292 * 65.56602 * 8 7 6 34 34 H 1.08995 * 109.47114 * 185.57153 * 8 7 6 35 35 H 0.97003 * 119.99790 * 355.02186 * 9 8 7 36 36 H 0.96995 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.52241 * 57.02680 * 18 7 6 38 38 H 1.09001 * 109.52208 * 177.20816 * 18 7 6 39 39 H 1.09001 * 109.45367 * 182.44411 * 19 18 7 40 40 H 1.09001 * 109.46638 * 62.45227 * 19 18 7 41 41 H 1.09002 * 109.48271 * 178.85858 * 21 20 19 42 42 H 1.09006 * 109.48979 * 58.83352 * 21 20 19 43 43 H 1.08998 * 109.52351 * 297.70375 * 22 21 20 44 44 H 1.09002 * 109.57870 * 177.54561 * 22 21 20 45 45 H 1.08001 * 120.78801 * 359.97438 * 24 23 2 46 46 H 1.07997 * 120.41842 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.61896 * 179.97438 * 26 25 24 48 48 H 1.08000 * 119.62049 * 180.31236 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.0964 -1.0043 3.6485 8 6 1.5552 -2.4320 3.5512 9 7 0.1090 -2.3913 3.3203 10 6 -0.5816 -3.5524 3.0968 11 1 -0.0603 -4.4983 3.0912 12 6 -1.9517 -3.5138 2.8775 13 7 -2.6157 -4.6299 2.6632 14 14 -2.8533 -1.8778 2.8865 15 1 -2.8683 -1.3133 1.5130 16 1 -4.2482 -2.0839 3.3523 17 1 -2.1601 -0.9356 3.8014 18 6 1.5234 -0.3228 4.8948 19 6 2.1331 1.0776 5.0247 20 8 3.5569 0.9731 5.0880 21 6 4.1508 0.3853 3.9287 22 6 3.6242 -1.0416 3.7549 23 6 2.0323 -0.7103 -1.2304 24 6 2.8301 -0.0447 -2.1489 25 6 3.2688 -0.7378 -3.2665 26 6 2.8994 -2.0601 -3.4268 27 7 2.1393 -2.6612 -2.5326 28 6 1.7082 -2.0347 -1.4551 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.2143 0.5808 2.5451 33 1 2.0408 -2.9491 2.7236 34 1 1.7598 -2.9623 4.4812 35 1 -0.3592 -1.5418 3.3256 36 1 -3.5731 -4.6029 2.5104 37 1 0.4403 -0.2437 4.8013 38 1 1.7716 -0.9112 5.7782 39 1 1.7626 1.5519 5.9335 40 1 1.8507 1.6783 4.1602 41 1 5.2340 0.3610 4.0479 42 1 3.8950 0.9768 3.0495 43 1 3.9147 -1.6444 4.6153 44 1 4.0420 -1.4771 2.8473 45 1 3.1026 0.9893 -1.9976 46 1 3.8918 -0.2511 -4.0021 47 1 3.2366 -2.6070 -4.2949 48 1 1.0914 -2.5615 -0.7422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502641941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:23 Heat of formation + Delta-G solvation = -30.108331 kcal Electronic energy + Delta-G solvation = -30781.801504 eV Core-core repulsion = 26837.186747 eV Total energy + Delta-G solvation = -3944.614756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.91453 -40.03012 -38.45499 -36.01476 -34.54022 -33.78396 -32.17879 -31.66253 -31.18829 -30.79532 -29.43972 -26.92885 -24.98850 -23.78607 -23.51856 -23.44881 -22.60184 -21.33447 -20.32523 -19.16323 -17.74825 -17.40161 -17.04123 -16.40441 -16.04841 -15.85899 -15.60639 -15.15952 -14.80381 -14.60921 -14.41624 -14.12001 -13.80422 -13.62915 -13.56088 -13.19301 -13.03711 -12.86289 -12.69702 -12.50571 -12.46248 -12.28430 -11.97638 -11.79067 -11.45197 -11.35107 -11.29838 -11.16643 -10.92752 -10.63511 -10.40121 -10.22795 -9.83085 -9.65761 -9.58097 -9.31558 -9.30467 -8.89777 -8.83627 -8.71614 -7.19161 -5.74988 -3.09319 1.17397 1.34900 2.83930 3.27669 3.28260 3.30726 3.40025 3.82526 3.94447 4.37887 4.56158 4.59739 4.69566 4.73949 4.84782 4.90137 4.91729 4.96658 5.00391 5.03530 5.15222 5.15749 5.26423 5.31054 5.53651 5.55122 5.59588 5.61548 5.67540 5.68888 5.79751 5.89072 5.90906 5.92400 6.04970 6.09673 6.15966 6.17614 6.26670 6.35062 6.41469 6.75798 6.79594 6.92227 7.13122 7.68021 8.02520 8.12443 8.42833 8.45918 9.22751 9.94239 10.14997 11.43927 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.006041 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.997697 B = 4633.972543 C = 6921.545530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 H 0.099 0.901 4 C 0.528 3.472 5 O -0.517 6.517 6 N -0.718 5.718 7 C 0.171 3.829 8 C 0.147 3.853 9 N -0.747 5.747 10 C -0.234 4.234 11 H 0.089 0.911 12 C 0.004 3.996 13 N -0.934 5.934 14 Si 0.879 3.121 15 H -0.283 1.283 16 H -0.292 1.292 17 H -0.281 1.281 18 C -0.157 4.157 19 C 0.061 3.939 20 O -0.384 6.384 21 C 0.067 3.933 22 C -0.162 4.162 23 C -0.117 4.117 24 C -0.072 4.072 25 C -0.182 4.182 26 C 0.094 3.906 27 N -0.483 5.483 28 C 0.143 3.857 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.393 0.607 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.357 0.643 36 H 0.258 0.742 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.151 0.849 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 16.795 -4.841 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 H 0.117 0.883 4 C 0.314 3.686 5 O -0.392 6.392 6 N -0.371 5.371 7 C 0.086 3.914 8 C 0.020 3.980 9 N -0.393 5.393 10 C -0.364 4.364 11 H 0.107 0.893 12 C -0.192 4.192 13 N -0.582 5.582 14 Si 0.710 3.290 15 H -0.210 1.210 16 H -0.219 1.219 17 H -0.207 1.207 18 C -0.195 4.195 19 C -0.016 4.016 20 O -0.303 6.303 21 C -0.010 4.010 22 C -0.201 4.201 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.202 4.202 26 C -0.063 4.063 27 N -0.191 5.191 28 C -0.014 4.014 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.227 0.773 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.190 0.810 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.169 0.831 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.472 14.978 -4.923 20.103 hybrid contribution -1.069 2.303 -0.042 2.539 sum 11.403 17.280 -4.965 21.290 Atomic orbital electron populations 1.21842 0.91424 1.04485 1.02470 1.20211 0.98077 0.99600 0.90840 0.88275 1.20152 0.79941 0.84556 0.83980 1.90678 1.36736 1.25460 1.86315 1.45969 1.59048 1.26552 1.05508 1.20644 0.93768 0.93466 0.83554 1.21047 0.85569 0.91664 0.99750 1.42540 1.02777 1.05833 1.88157 1.19052 0.90558 0.86756 1.40051 0.89308 1.24634 0.96198 0.96038 1.02300 1.69693 1.07766 1.24918 1.55844 0.86642 0.79702 0.85032 0.77628 1.21002 1.21888 1.20728 1.22504 1.01668 0.97030 0.98301 1.22617 0.81241 0.95921 1.01772 1.87911 1.19747 1.81831 1.40801 1.22513 0.97675 0.92955 0.87878 1.22541 0.95282 0.97793 1.04497 1.20317 0.99523 0.96034 0.96077 1.21384 0.95073 0.99846 0.93468 1.22015 1.02672 0.96416 0.99098 1.22788 0.93797 0.92239 0.97493 1.67787 1.10187 1.38524 1.02622 1.22756 0.94807 0.90870 0.92999 0.91748 0.91501 0.90565 0.77334 0.92388 0.95423 0.81023 0.93159 0.89797 0.89144 0.88782 0.93653 0.89204 0.93547 0.90267 0.88647 0.85280 0.85134 0.83124 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.92 37.16 0.33 -1.51 16 2 C -0.07 -0.79 2.91 -92.93 -0.27 -1.06 16 3 H 0.10 0.88 7.93 -51.92 -0.41 0.47 16 4 C 0.53 7.80 6.44 -10.99 -0.07 7.73 16 5 O -0.52 -9.45 11.41 5.56 0.06 -9.38 16 6 N -0.72 -9.51 3.61 -47.44 -0.17 -9.68 16 7 C 0.17 2.50 0.32 -131.63 -0.04 2.46 16 8 C 0.15 2.87 4.79 -4.04 -0.02 2.85 16 9 N -0.75 -16.92 5.01 -59.91 -0.30 -17.22 16 10 C -0.23 -6.54 10.47 -15.06 -0.16 -6.70 16 11 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 12 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 13 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 14 Si 0.88 21.28 27.74 -169.99 -4.71 16.57 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 18 C -0.16 -2.04 4.84 -26.50 -0.13 -2.17 16 19 C 0.06 0.66 6.67 37.30 0.25 0.91 16 20 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 21 C 0.07 0.76 6.68 37.20 0.25 1.01 16 22 C -0.16 -2.17 4.82 -26.59 -0.13 -2.30 16 23 C -0.12 -1.59 4.40 -104.48 -0.46 -2.05 16 24 C -0.07 -0.80 9.81 -39.28 -0.39 -1.18 16 25 C -0.18 -1.94 10.11 -39.44 -0.40 -2.34 16 26 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 27 N -0.48 -7.97 10.36 -13.25 -0.14 -8.11 16 28 C 0.14 2.38 9.12 -17.55 -0.16 2.22 16 29 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.23 7.43 -51.92 -0.39 0.84 16 32 H 0.39 4.23 6.99 -40.82 -0.29 3.94 16 33 H 0.06 1.28 6.25 -51.93 -0.32 0.96 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.36 7.68 4.37 -40.82 -0.18 7.50 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.08 1.17 7.22 -51.93 -0.37 0.80 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.42 7.01 -51.93 -0.36 0.06 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.44 6.26 -51.93 -0.33 1.11 16 45 H 0.13 1.04 8.00 -52.49 -0.42 0.62 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.15 1.47 8.06 -52.48 -0.42 1.04 16 48 H 0.16 3.00 7.53 -52.49 -0.40 2.60 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -34.37 376.36 -8.12 -42.48 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.24 Total: 14.42 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.68 Total: -1.13 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.17 Total: -63.51 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.32 Total: -14.50 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.37 -8.12 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502641941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.376 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds