Wall clock time and date at job start Tue Mar 31 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46644 * 2 1 4 4 C 1.50693 * 109.47288 * 119.99952 * 2 1 3 5 5 O 1.21280 * 120.00035 * 120.00422 * 4 2 1 6 6 N 1.34776 * 120.00204 * 300.00384 * 4 2 1 7 7 C 1.46503 * 120.00363 * 174.69134 * 6 4 2 8 8 C 1.53000 * 109.54577 * 304.16892 * 7 6 4 9 9 N 1.46504 * 109.46821 * 305.56823 * 8 7 6 10 10 C 1.36932 * 119.99654 * 175.01837 * 9 8 7 11 11 H 1.07996 * 120.00585 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99629 * 180.02562 * 10 9 8 13 13 N 1.31624 * 120.00068 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99988 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47065 * 90.00207 * 14 12 10 16 16 H 1.48503 * 109.46979 * 209.99947 * 14 12 10 17 17 H 1.48498 * 109.47408 * 329.99776 * 14 12 10 18 18 C 1.53172 * 109.54586 * 183.98467 * 7 6 4 19 19 C 1.53283 * 109.06515 * 297.03279 * 18 7 6 20 20 O 1.42903 * 109.46397 * 302.44185 * 19 18 7 21 21 C 1.42902 * 114.09296 * 61.15677 * 20 19 18 22 22 C 1.53089 * 109.41949 * 298.84306 * 21 20 19 23 23 C 1.50693 * 109.47223 * 240.00340 * 2 1 3 24 24 C 1.38675 * 120.42103 * 120.00064 * 23 2 1 25 25 C 1.38626 * 118.42404 * 180.02562 * 24 23 2 26 26 C 1.38221 * 119.16007 * 359.97438 * 25 24 23 27 27 N 1.31860 * 120.76486 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72502 * 359.69956 * 27 26 25 29 29 H 1.09000 * 109.47394 * 299.99785 * 1 2 3 30 30 H 1.09003 * 109.47219 * 60.00307 * 1 2 3 31 31 H 1.09007 * 109.46644 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00307 * 354.69878 * 6 4 2 33 33 H 1.08998 * 109.47292 * 65.56602 * 8 7 6 34 34 H 1.08995 * 109.47114 * 185.57153 * 8 7 6 35 35 H 0.97003 * 119.99790 * 355.02186 * 9 8 7 36 36 H 0.96995 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.52241 * 57.02680 * 18 7 6 38 38 H 1.09001 * 109.52208 * 177.20816 * 18 7 6 39 39 H 1.09001 * 109.45367 * 182.44411 * 19 18 7 40 40 H 1.09001 * 109.46638 * 62.45227 * 19 18 7 41 41 H 1.09002 * 109.48271 * 178.85858 * 21 20 19 42 42 H 1.09006 * 109.48979 * 58.83352 * 21 20 19 43 43 H 1.08998 * 109.52351 * 297.70375 * 22 21 20 44 44 H 1.09002 * 109.57870 * 177.54561 * 22 21 20 45 45 H 1.08001 * 120.78801 * 359.97438 * 24 23 2 46 46 H 1.07997 * 120.41842 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.61896 * 179.97438 * 26 25 24 48 48 H 1.08000 * 119.62049 * 180.31236 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.0964 -1.0043 3.6485 8 6 1.5552 -2.4320 3.5512 9 7 0.1090 -2.3913 3.3203 10 6 -0.5816 -3.5524 3.0968 11 1 -0.0603 -4.4983 3.0912 12 6 -1.9517 -3.5138 2.8775 13 7 -2.6157 -4.6299 2.6632 14 14 -2.8533 -1.8778 2.8865 15 1 -2.8683 -1.3133 1.5130 16 1 -4.2482 -2.0839 3.3523 17 1 -2.1601 -0.9356 3.8014 18 6 1.5234 -0.3228 4.8948 19 6 2.1331 1.0776 5.0247 20 8 3.5569 0.9731 5.0880 21 6 4.1508 0.3853 3.9287 22 6 3.6242 -1.0416 3.7549 23 6 2.0323 -0.7103 -1.2304 24 6 2.8301 -0.0447 -2.1489 25 6 3.2688 -0.7378 -3.2665 26 6 2.8994 -2.0601 -3.4268 27 7 2.1393 -2.6612 -2.5326 28 6 1.7082 -2.0347 -1.4551 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.2143 0.5808 2.5451 33 1 2.0408 -2.9491 2.7236 34 1 1.7598 -2.9623 4.4812 35 1 -0.3592 -1.5418 3.3256 36 1 -3.5731 -4.6029 2.5104 37 1 0.4403 -0.2437 4.8013 38 1 1.7716 -0.9112 5.7782 39 1 1.7626 1.5519 5.9335 40 1 1.8507 1.6783 4.1602 41 1 5.2340 0.3610 4.0479 42 1 3.8950 0.9768 3.0495 43 1 3.9147 -1.6444 4.6153 44 1 4.0420 -1.4771 2.8473 45 1 3.1026 0.9893 -1.9976 46 1 3.8918 -0.2511 -4.0021 47 1 3.2366 -2.6070 -4.2949 48 1 1.0914 -2.5615 -0.7422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502641941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:21 Heat of formation + Delta-G solvation = -55.874021 kcal Electronic energy + Delta-G solvation = -30782.918788 eV Core-core repulsion = 26837.186747 eV Total energy + Delta-G solvation = -3945.732040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03247 -41.05901 -39.50566 -37.38825 -35.63158 -35.52655 -33.43436 -33.03638 -32.43218 -32.08948 -30.44314 -28.50788 -26.04619 -25.18058 -24.69097 -24.48722 -23.73282 -22.91507 -21.35437 -20.45755 -19.74023 -18.45240 -18.03424 -17.41987 -16.99923 -16.92467 -16.83961 -16.51906 -16.13051 -16.00214 -15.53848 -15.27551 -15.18070 -14.92577 -14.70413 -14.62222 -14.36842 -14.07365 -13.92740 -13.75988 -13.54467 -13.41783 -13.28814 -13.11489 -12.86317 -12.78859 -12.48353 -12.32609 -12.26338 -12.15830 -11.88220 -11.70911 -11.36727 -11.04125 -10.80928 -10.62732 -10.39476 -10.34471 -9.94463 -9.88240 -9.28164 -8.03014 -5.36517 0.18053 0.40104 1.29052 1.38451 1.45662 1.70092 2.20513 2.46718 2.91549 2.97071 3.27696 3.41520 3.45759 3.62099 3.70809 3.78270 3.82917 3.92748 4.01675 4.07137 4.09260 4.14040 4.22216 4.27289 4.39229 4.43311 4.59633 4.64154 4.72985 4.74896 4.79389 4.81652 4.84740 4.86927 4.90394 5.07242 5.09487 5.12572 5.17854 5.18442 5.20248 5.35764 5.60146 5.73851 5.82518 6.18718 6.26118 6.62529 7.06791 7.09228 7.36250 7.79153 8.05220 9.19438 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.006041 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.997697 B = 4633.972543 C = 6921.545530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 H 0.151 0.849 4 C 0.521 3.479 5 O -0.560 6.560 6 N -0.708 5.708 7 C 0.181 3.819 8 C 0.148 3.852 9 N -0.737 5.737 10 C -0.231 4.231 11 H 0.038 0.962 12 C -0.066 4.066 13 N -0.988 5.988 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.299 1.299 17 H -0.240 1.240 18 C -0.153 4.153 19 C 0.064 3.936 20 O -0.393 6.393 21 C 0.074 3.926 22 C -0.157 4.157 23 C -0.122 4.122 24 C -0.065 4.065 25 C -0.166 4.166 26 C 0.077 3.923 27 N -0.529 5.529 28 C 0.107 3.893 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.410 0.590 33 H 0.024 0.976 34 H 0.018 0.982 35 H 0.368 0.632 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.175 0.825 46 H 0.175 0.825 47 H 0.175 0.825 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.275 22.919 -5.365 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 H 0.169 0.831 4 C 0.308 3.692 5 O -0.437 6.437 6 N -0.362 5.362 7 C 0.094 3.906 8 C 0.021 3.979 9 N -0.383 5.383 10 C -0.362 4.362 11 H 0.056 0.944 12 C -0.257 4.257 13 N -0.639 5.639 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.226 1.226 17 H -0.164 1.164 18 C -0.192 4.192 19 C -0.012 4.012 20 O -0.312 6.312 21 C -0.002 4.002 22 C -0.196 4.196 23 C -0.124 4.124 24 C -0.090 4.090 25 C -0.186 4.186 26 C -0.080 4.080 27 N -0.238 5.238 28 C -0.049 4.049 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.247 0.753 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.202 0.798 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.193 0.807 46 H 0.192 0.808 47 H 0.192 0.808 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.624 21.161 -5.419 25.744 hybrid contribution -1.320 0.198 0.045 1.335 sum 12.304 21.359 -5.374 25.229 Atomic orbital electron populations 1.21839 0.91893 1.01912 1.04466 1.20277 0.97507 1.01470 0.88522 0.83149 1.20773 0.79223 0.84088 0.85113 1.90683 1.38762 1.27333 1.86950 1.45847 1.58823 1.26883 1.04623 1.20405 0.94566 0.90405 0.85226 1.21057 0.83665 0.95577 0.97633 1.42300 1.03851 1.04437 1.87753 1.18905 0.90954 0.86871 1.39477 0.94383 1.25572 0.97038 1.00909 1.02162 1.69925 1.07983 1.28333 1.57612 0.85435 0.77460 0.80021 0.79079 1.19403 1.22631 1.16402 1.22483 1.01431 0.98657 0.96588 1.22745 0.80290 0.94156 1.04009 1.87918 1.20592 1.81544 1.41135 1.22502 0.98403 0.91002 0.88317 1.22460 0.94142 0.99706 1.03268 1.20443 0.99926 0.94729 0.97332 1.21904 0.93188 1.01657 0.92294 1.22500 1.01364 0.95221 0.99472 1.23322 0.93315 0.93942 0.97418 1.67619 1.12088 1.40409 1.03678 1.22261 0.96670 0.92681 0.93267 0.89967 0.89247 0.95362 0.75255 0.95812 0.96463 0.79757 0.93463 0.90184 0.89975 0.86715 0.91208 0.87776 0.92175 0.90844 0.90684 0.80724 0.80761 0.80770 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.92 71.98 0.64 -2.73 16 2 C -0.06 -1.22 2.91 -12.29 -0.04 -1.26 16 3 H 0.15 1.76 7.93 -2.38 -0.02 1.74 16 4 C 0.52 15.04 6.44 87.65 0.56 15.60 16 5 O -0.56 -21.46 11.41 -3.03 -0.03 -21.50 16 6 N -0.71 -17.32 3.61 -422.38 -1.52 -18.84 16 7 C 0.18 5.14 0.32 3.72 0.00 5.14 16 8 C 0.15 6.10 4.79 86.38 0.41 6.51 16 9 N -0.74 -34.44 5.01 -343.46 -1.72 -36.16 16 10 C -0.23 -13.73 10.47 84.04 0.88 -12.85 16 11 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 12 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 13 N -0.99 -65.35 13.97 21.65 0.30 -65.05 16 14 Si 0.95 44.14 27.74 68.60 1.90 46.05 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.24 -9.41 6.52 99.48 0.65 -8.77 16 18 C -0.15 -3.63 4.84 30.75 0.15 -3.48 16 19 C 0.06 1.10 6.67 72.08 0.48 1.59 16 20 O -0.39 -8.21 10.77 -148.98 -1.60 -9.82 16 21 C 0.07 1.48 6.68 72.01 0.48 1.96 16 22 C -0.16 -4.11 4.82 30.69 0.15 -3.96 16 23 C -0.12 -3.18 4.40 -19.77 -0.09 -3.27 16 24 C -0.06 -1.18 9.81 22.47 0.22 -0.96 16 25 C -0.17 -2.95 10.11 22.36 0.23 -2.73 16 26 C 0.08 1.89 11.18 84.68 0.95 2.84 16 27 N -0.53 -18.53 10.36 -195.84 -2.03 -20.55 16 28 C 0.11 3.85 9.12 84.67 0.77 4.62 16 29 H 0.08 1.59 7.69 -2.39 -0.02 1.57 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 0.92 7.43 -2.38 -0.02 0.91 16 32 H 0.41 7.09 6.99 -92.71 -0.65 6.44 16 33 H 0.02 1.15 6.25 -2.39 -0.01 1.14 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.37 15.47 4.37 -92.71 -0.41 15.07 16 36 H 0.26 16.12 8.31 -92.71 -0.77 15.34 16 37 H 0.08 1.97 7.22 -2.39 -0.02 1.96 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 0.89 7.01 -2.39 -0.02 0.87 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.06 7.75 -2.38 -0.02 1.04 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.32 6.26 -2.39 -0.01 2.30 16 45 H 0.18 1.61 8.00 -2.91 -0.02 1.58 16 46 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 48 H 0.11 4.81 7.53 -2.91 -0.02 4.79 16 Total: -1.00 -85.38 376.36 1.43 -83.96 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.13 Total: 38.40 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.27 Total: 3.52 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -4.97 Total: -140.61 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.64 Total: -31.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.05 kcal Total: -85.38 1.43 -83.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502641941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.081 kcal (2) G-P(sol) polarization free energy of solvation -85.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds