Wall clock time and date at job start Tue Mar 31 2020 17:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.69240 * 2 1 4 4 C 1.53201 * 109.58188 * 120.34365 * 2 1 3 5 5 N 1.47325 * 108.80304 * 119.80233 * 4 2 1 6 6 C 1.47272 * 110.15645 * 60.80797 * 5 4 2 7 7 C 1.53236 * 108.80173 * 299.18314 * 6 5 4 8 8 N 1.47268 * 108.80277 * 0.02562 * 7 6 5 9 9 C 1.47311 * 110.16031 * 299.18554 * 8 7 6 10 10 C 1.47305 * 110.07688 * 299.13609 * 5 4 2 11 11 H 1.08994 * 109.58458 * 180.65264 * 10 5 4 12 12 C 1.50699 * 109.58616 * 301.06427 * 10 5 4 13 13 O 1.21285 * 119.99764 * 5.97421 * 12 10 5 14 14 N 1.34774 * 120.00717 * 185.98252 * 12 10 5 15 15 C 1.46498 * 120.00865 * 179.97438 * 14 12 10 16 16 C 1.50698 * 109.46949 * 89.99535 * 15 14 12 17 17 H 1.08001 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46991 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47226 * 119.99764 * 20 18 16 23 23 H 1.48496 * 109.47458 * 240.00209 * 20 18 16 24 24 C 1.46511 * 119.99438 * 359.97438 * 14 12 10 25 25 C 1.50701 * 109.46933 * 90.00465 * 24 14 12 26 26 C 1.34508 * 125.79296 * 89.71519 * 25 24 14 27 27 C 1.41384 * 106.84480 * 179.88801 * 26 25 24 28 28 C 1.34523 * 106.83704 * 0.37107 * 27 26 25 29 29 O 1.34299 * 108.41880 * 359.77446 * 28 27 26 30 30 H 1.09007 * 109.47225 * 180.33752 * 1 2 3 31 31 H 1.08994 * 109.47204 * 300.33646 * 1 2 3 32 32 H 1.08998 * 109.47371 * 60.34183 * 1 2 3 33 33 H 1.08999 * 109.58510 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.58440 * 239.59213 * 4 2 1 35 35 H 1.08997 * 109.58324 * 58.97532 * 6 5 4 36 36 H 1.08996 * 109.58189 * 179.38766 * 6 5 4 37 37 H 1.08999 * 109.57976 * 119.80670 * 7 6 5 38 38 H 1.08994 * 109.57963 * 240.21370 * 7 6 5 39 39 H 1.08999 * 109.59125 * 180.60971 * 9 8 7 40 40 H 1.09013 * 109.57844 * 300.87831 * 9 8 7 41 41 H 1.08991 * 109.47343 * 209.99960 * 15 14 12 42 42 H 1.09006 * 109.46728 * 329.99948 * 15 14 12 43 43 H 0.97005 * 120.00237 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46956 * 209.99986 * 24 14 12 45 45 H 1.09000 * 109.47065 * 330.00104 * 24 14 12 46 46 H 1.08003 * 126.57683 * 0.02562 * 26 25 24 47 47 H 1.07991 * 126.58478 * 180.16787 * 27 26 25 48 48 H 1.07997 * 125.79019 * 179.75119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7292 1.2457 5 7 2.8557 -1.8822 0.8199 6 6 4.0100 -1.4251 0.0278 7 6 3.4963 -0.6959 -1.2182 8 7 2.0238 -0.7008 -1.1977 9 6 1.5204 -2.0851 -1.2165 10 6 2.0344 -2.8147 0.0288 11 1 2.6397 -3.6698 -0.2720 12 6 0.8660 -3.2855 0.8560 13 8 0.6661 -2.8054 1.9517 14 7 0.0433 -4.2403 0.3785 15 6 -1.0922 -4.6984 1.1828 16 6 -2.3014 -3.8549 0.8710 17 1 -2.2313 -3.0575 0.1459 18 6 -3.4974 -4.1010 1.5115 19 7 -3.5829 -5.0722 2.3941 20 14 -4.9965 -3.0559 1.1246 21 1 -4.6403 -2.0385 0.1031 22 1 -6.0826 -3.9229 0.6012 23 1 -5.4584 -2.3759 2.3612 24 6 0.2846 -4.8200 -0.9453 25 6 1.1871 -6.0194 -0.8114 26 6 0.7857 -7.2878 -0.6136 27 6 1.9537 -8.0822 -0.5512 28 6 2.9994 -7.2503 -0.7065 29 8 2.5291 -6.0022 -0.8636 30 1 -0.3634 -1.0277 0.0061 31 1 -0.3633 0.5190 0.8869 32 1 -0.3634 0.5085 -0.8930 33 1 1.1984 -1.0774 1.8396 34 1 2.6556 -0.0507 1.8398 35 1 4.6165 -0.7445 0.6253 36 1 4.6099 -2.2840 -0.2728 37 1 3.8581 0.3323 -1.2148 38 1 3.8512 -1.2072 -2.1129 39 1 0.4304 -2.0777 -1.2120 40 1 1.8786 -2.5919 -2.1127 41 1 -1.3063 -5.7411 0.9485 42 1 -0.8482 -4.6065 2.2412 43 1 -4.4244 -5.2456 2.8444 44 1 -0.6641 -5.1266 -1.3860 45 1 0.7598 -4.0773 -1.5861 46 1 -0.2334 -7.6336 -0.5223 47 1 1.9980 -9.1510 -0.4037 48 1 4.0405 -7.5374 -0.7047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548637810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:42 Heat of formation + Delta-G solvation = 32.677529 kcal Electronic energy + Delta-G solvation = -31382.515348 eV Core-core repulsion = 27440.623191 eV Total energy + Delta-G solvation = -3941.892157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37237 -41.46548 -38.49878 -35.39387 -33.48708 -32.90520 -32.77408 -32.14760 -31.34004 -30.17354 -27.56483 -26.84303 -25.62214 -24.29162 -23.66352 -22.60411 -21.78798 -21.51095 -20.51627 -19.02003 -18.07322 -17.58245 -16.97841 -16.53802 -16.40713 -15.99241 -15.68988 -15.34447 -14.88518 -14.64169 -14.17174 -13.93269 -13.62087 -13.35099 -13.15947 -12.92362 -12.73522 -12.66102 -12.62918 -12.52060 -12.41033 -12.18405 -11.77962 -11.67384 -11.47659 -11.30868 -11.23796 -10.92802 -10.85273 -10.65191 -10.52742 -10.37878 -10.16807 -9.76566 -9.71414 -9.66652 -8.76770 -8.48669 -8.32249 -7.85761 -7.55630 -6.09055 -4.14342 1.87685 2.80302 3.08473 3.26774 3.33160 3.35890 3.40040 3.59491 3.85089 4.29378 4.40258 4.66294 4.77458 4.83539 4.90656 4.94745 5.08235 5.17973 5.23414 5.25870 5.31376 5.44682 5.46237 5.47143 5.50887 5.61423 5.62307 5.78807 5.79898 5.82966 5.93313 5.99200 6.03043 6.16280 6.21376 6.27957 6.37229 6.48227 6.67418 6.69849 6.81799 6.97154 7.17572 7.25903 7.30490 7.41132 7.46464 7.86702 8.16173 8.25798 8.83690 8.99731 9.51167 10.99035 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.006255 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.189210 B = 4475.178712 C = 6954.530625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.009 4.009 5 N -0.493 5.493 6 C 0.010 3.990 7 C 0.010 3.990 8 N -0.509 5.509 9 C 0.015 3.985 10 C 0.021 3.979 11 H 0.108 0.892 12 C 0.522 3.478 13 O -0.515 6.515 14 N -0.591 5.591 15 C 0.248 3.752 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.184 3.816 25 C -0.028 4.028 26 C -0.192 4.192 27 C -0.213 4.213 28 C -0.049 4.049 29 O -0.178 6.178 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.150 0.850 47 H 0.145 0.855 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.210 2.177 -9.765 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 H 0.100 0.900 4 C -0.138 4.138 5 N -0.214 5.214 6 C -0.120 4.120 7 C -0.120 4.120 8 N -0.231 5.231 9 C -0.115 4.115 10 C -0.093 4.093 11 H 0.126 0.874 12 C 0.308 3.692 13 O -0.391 6.391 14 N -0.322 5.322 15 C 0.129 3.871 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.059 3.941 25 C -0.079 4.079 26 C -0.212 4.212 27 C -0.232 4.232 28 C -0.117 4.117 29 O -0.074 6.074 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.135 0.865 45 H 0.104 0.896 46 H 0.168 0.832 47 H 0.162 0.838 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.114 2.622 -9.060 16.976 hybrid contribution -0.754 0.019 -0.129 0.765 sum 13.361 2.640 -9.189 16.429 Atomic orbital electron populations 1.21893 0.93153 1.03284 1.01767 1.22458 0.96969 0.97959 0.89736 0.90045 1.23611 1.00826 0.91883 0.97503 1.63635 1.07597 1.14347 1.35827 1.22940 0.94090 1.00274 0.94675 1.22903 0.88699 1.01661 0.98727 1.63967 1.07606 1.13507 1.38004 1.23038 1.02447 0.89115 0.96922 1.22466 0.95580 0.97442 0.93824 0.87402 1.19963 0.82495 0.80006 0.86699 1.90520 1.72677 1.54875 1.20989 1.48273 1.29159 1.37482 1.17335 1.19336 0.81182 0.94915 0.91643 1.21417 0.94289 1.16830 1.24009 0.92306 1.24914 0.98857 0.95314 0.94815 1.69942 1.26384 1.30245 1.26491 0.86482 0.82582 0.80308 0.78310 1.19698 1.20974 1.20899 1.20071 0.96931 0.90215 0.86911 1.23267 0.80679 0.98028 1.05914 1.21705 1.00297 0.92504 1.06697 1.21825 0.92409 1.00781 1.08200 1.23931 0.99587 0.81365 1.06796 1.83984 1.21676 1.31068 1.70699 0.91538 0.91801 0.92391 0.84986 0.91086 0.90112 0.90374 0.90322 0.90264 0.88624 0.89667 0.94811 0.93748 0.92726 0.86481 0.89607 0.83205 0.83755 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.63 37.16 0.32 -1.92 16 2 C 0.04 0.55 3.05 -67.40 -0.21 0.35 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.01 -0.15 5.37 -3.49 -0.02 -0.17 16 5 N -0.49 -7.85 5.10 -226.63 -1.16 -9.01 16 6 C 0.01 0.13 6.14 -3.50 -0.02 0.10 16 7 C 0.01 0.11 6.14 -3.50 -0.02 0.09 16 8 N -0.51 -6.91 5.24 -225.27 -1.18 -8.09 16 9 C 0.01 0.21 3.62 -3.49 -0.01 0.20 16 10 C 0.02 0.34 2.06 -68.54 -0.14 0.20 16 11 H 0.11 1.70 6.52 -51.93 -0.34 1.37 16 12 C 0.52 10.68 5.73 -10.99 -0.06 10.61 16 13 O -0.51 -12.49 13.06 5.55 0.07 -12.42 16 14 N -0.59 -11.98 2.44 -176.43 -0.43 -12.41 16 15 C 0.25 6.20 5.16 -5.20 -0.03 6.17 16 16 C -0.53 -14.09 9.39 -34.44 -0.32 -14.42 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.18 2.93 5.48 -5.19 -0.03 2.90 16 25 C -0.03 -0.43 6.77 -35.63 -0.24 -0.67 16 26 C -0.19 -2.95 10.81 -39.70 -0.43 -3.38 16 27 C -0.21 -2.81 10.91 -39.70 -0.43 -3.24 16 28 C -0.05 -0.60 12.09 29.42 0.36 -0.25 16 29 O -0.18 -2.60 9.41 5.71 0.05 -2.55 16 30 H 0.07 1.23 5.52 -51.93 -0.29 0.95 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.13 2.62 4.45 -51.94 -0.23 2.39 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.53 5.28 -51.93 -0.27 1.26 16 40 H 0.09 1.05 7.54 -51.92 -0.39 0.65 16 41 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.12 1.81 8.07 -51.93 -0.42 1.39 16 45 H 0.09 1.17 4.47 -51.93 -0.23 0.94 16 46 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 47 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 48 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -31.81 368.95 -9.92 -41.73 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.17 Total: 7.84 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.39 Total: -1.77 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -2.03 Total: -54.56 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.13 Total: -14.97 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.81 -9.92 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548637810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.412 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds