Wall clock time and date at job start Tue Mar 31 2020 17:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.69240 * 2 1 4 4 C 1.53201 * 109.58188 * 120.34365 * 2 1 3 5 5 N 1.47325 * 108.80304 * 119.80233 * 4 2 1 6 6 C 1.47272 * 110.15645 * 60.80797 * 5 4 2 7 7 C 1.53236 * 108.80173 * 299.18314 * 6 5 4 8 8 N 1.47268 * 108.80277 * 0.02562 * 7 6 5 9 9 C 1.47311 * 110.16031 * 299.18554 * 8 7 6 10 10 C 1.47305 * 110.07688 * 299.13609 * 5 4 2 11 11 H 1.08994 * 109.58458 * 180.65264 * 10 5 4 12 12 C 1.50699 * 109.58616 * 301.06427 * 10 5 4 13 13 O 1.21285 * 119.99764 * 5.97421 * 12 10 5 14 14 N 1.34774 * 120.00717 * 185.98252 * 12 10 5 15 15 C 1.46498 * 120.00865 * 179.97438 * 14 12 10 16 16 C 1.50698 * 109.46949 * 89.99535 * 15 14 12 17 17 H 1.08001 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00186 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46991 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47226 * 119.99764 * 20 18 16 23 23 H 1.48496 * 109.47458 * 240.00209 * 20 18 16 24 24 C 1.46511 * 119.99438 * 359.97438 * 14 12 10 25 25 C 1.50701 * 109.46933 * 90.00465 * 24 14 12 26 26 C 1.34508 * 125.79296 * 89.71519 * 25 24 14 27 27 C 1.41384 * 106.84480 * 179.88801 * 26 25 24 28 28 C 1.34523 * 106.83704 * 0.37107 * 27 26 25 29 29 O 1.34299 * 108.41880 * 359.77446 * 28 27 26 30 30 H 1.09007 * 109.47225 * 180.33752 * 1 2 3 31 31 H 1.08994 * 109.47204 * 300.33646 * 1 2 3 32 32 H 1.08998 * 109.47371 * 60.34183 * 1 2 3 33 33 H 1.08999 * 109.58510 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.58440 * 239.59213 * 4 2 1 35 35 H 1.08997 * 109.58324 * 58.97532 * 6 5 4 36 36 H 1.08996 * 109.58189 * 179.38766 * 6 5 4 37 37 H 1.08999 * 109.57976 * 119.80670 * 7 6 5 38 38 H 1.08994 * 109.57963 * 240.21370 * 7 6 5 39 39 H 1.08999 * 109.59125 * 180.60971 * 9 8 7 40 40 H 1.09013 * 109.57844 * 300.87831 * 9 8 7 41 41 H 1.08991 * 109.47343 * 209.99960 * 15 14 12 42 42 H 1.09006 * 109.46728 * 329.99948 * 15 14 12 43 43 H 0.97005 * 120.00237 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46956 * 209.99986 * 24 14 12 45 45 H 1.09000 * 109.47065 * 330.00104 * 24 14 12 46 46 H 1.08003 * 126.57683 * 0.02562 * 26 25 24 47 47 H 1.07991 * 126.58478 * 180.16787 * 27 26 25 48 48 H 1.07997 * 125.79019 * 179.75119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7292 1.2457 5 7 2.8557 -1.8822 0.8199 6 6 4.0100 -1.4251 0.0278 7 6 3.4963 -0.6959 -1.2182 8 7 2.0238 -0.7008 -1.1977 9 6 1.5204 -2.0851 -1.2165 10 6 2.0344 -2.8147 0.0288 11 1 2.6397 -3.6698 -0.2720 12 6 0.8660 -3.2855 0.8560 13 8 0.6661 -2.8054 1.9517 14 7 0.0433 -4.2403 0.3785 15 6 -1.0922 -4.6984 1.1828 16 6 -2.3014 -3.8549 0.8710 17 1 -2.2313 -3.0575 0.1459 18 6 -3.4974 -4.1010 1.5115 19 7 -3.5829 -5.0722 2.3941 20 14 -4.9965 -3.0559 1.1246 21 1 -4.6403 -2.0385 0.1031 22 1 -6.0826 -3.9229 0.6012 23 1 -5.4584 -2.3759 2.3612 24 6 0.2846 -4.8200 -0.9453 25 6 1.1871 -6.0194 -0.8114 26 6 0.7857 -7.2878 -0.6136 27 6 1.9537 -8.0822 -0.5512 28 6 2.9994 -7.2503 -0.7065 29 8 2.5291 -6.0022 -0.8636 30 1 -0.3634 -1.0277 0.0061 31 1 -0.3633 0.5190 0.8869 32 1 -0.3634 0.5085 -0.8930 33 1 1.1984 -1.0774 1.8396 34 1 2.6556 -0.0507 1.8398 35 1 4.6165 -0.7445 0.6253 36 1 4.6099 -2.2840 -0.2728 37 1 3.8581 0.3323 -1.2148 38 1 3.8512 -1.2072 -2.1129 39 1 0.4304 -2.0777 -1.2120 40 1 1.8786 -2.5919 -2.1127 41 1 -1.3063 -5.7411 0.9485 42 1 -0.8482 -4.6065 2.2412 43 1 -4.4244 -5.2456 2.8444 44 1 -0.6641 -5.1266 -1.3860 45 1 0.7598 -4.0773 -1.5861 46 1 -0.2334 -7.6336 -0.5223 47 1 1.9980 -9.1510 -0.4037 48 1 4.0405 -7.5374 -0.7047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548637810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:40 Heat of formation + Delta-G solvation = 9.157995 kcal Electronic energy + Delta-G solvation = -31383.535232 eV Core-core repulsion = 27440.623191 eV Total energy + Delta-G solvation = -3942.912041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.48758 -42.66884 -40.02982 -37.02727 -34.96497 -34.60687 -33.89537 -33.27626 -32.64465 -31.51186 -29.31527 -28.09330 -26.93798 -25.83977 -24.84479 -24.16407 -22.97725 -22.62099 -21.69645 -20.46442 -19.32025 -18.93195 -18.45892 -18.07294 -17.69510 -17.26526 -16.96992 -16.78629 -16.41933 -16.01200 -15.82300 -15.23986 -14.83421 -14.57730 -14.35006 -14.30513 -14.10896 -14.01810 -13.82266 -13.74684 -13.57259 -13.48739 -13.31765 -13.21490 -12.89108 -12.82152 -12.67615 -12.50635 -12.44410 -12.19412 -12.11120 -11.75061 -11.56656 -11.44014 -10.84253 -10.82895 -10.64710 -10.33064 -9.67451 -9.38655 -8.70422 -8.22114 -6.35971 0.74199 1.36689 1.38819 1.50221 1.64631 1.71850 2.10456 2.22863 2.40089 2.66867 3.08573 3.12904 3.44580 3.65016 3.70398 3.78012 3.86450 3.92948 4.04091 4.15957 4.21706 4.32402 4.35155 4.36452 4.45512 4.49607 4.54213 4.62134 4.73477 4.81490 4.83548 4.89357 4.92162 4.98127 5.03247 5.04551 5.12547 5.21211 5.21739 5.22604 5.49631 5.57164 5.62878 5.72787 5.80467 6.02204 6.04768 6.18849 6.22033 6.62192 6.73784 7.27449 7.42195 8.85671 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.006255 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.189210 B = 4475.178712 C = 6954.530625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 H 0.105 0.895 4 C -0.006 4.006 5 N -0.517 5.517 6 C 0.012 3.988 7 C 0.013 3.987 8 N -0.508 5.508 9 C 0.020 3.980 10 C 0.038 3.962 11 H 0.117 0.883 12 C 0.514 3.486 13 O -0.564 6.564 14 N -0.594 5.594 15 C 0.269 3.731 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.285 1.285 24 C 0.185 3.815 25 C -0.047 4.047 26 C -0.209 4.209 27 C -0.229 4.229 28 C -0.033 4.033 29 O -0.183 6.183 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.023 0.977 42 H -0.007 1.007 43 H 0.266 0.734 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.140 0.860 47 H 0.167 0.833 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.536 3.113 -12.369 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 H 0.123 0.877 4 C -0.136 4.136 5 N -0.239 5.239 6 C -0.117 4.117 7 C -0.116 4.116 8 N -0.230 5.230 9 C -0.110 4.110 10 C -0.076 4.076 11 H 0.135 0.865 12 C 0.302 3.698 13 O -0.443 6.443 14 N -0.325 5.325 15 C 0.148 3.852 16 C -0.572 4.572 17 H 0.076 0.924 18 C -0.188 4.188 19 N -0.568 5.568 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.211 1.211 24 C 0.062 3.938 25 C -0.098 4.098 26 C -0.229 4.229 27 C -0.248 4.248 28 C -0.100 4.100 29 O -0.079 6.079 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.133 0.867 41 H 0.041 0.959 42 H 0.011 0.989 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.158 0.842 47 H 0.185 0.815 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 16.469 3.551 -11.717 20.522 hybrid contribution -1.387 -0.343 0.737 1.607 sum 15.083 3.208 -10.980 18.930 Atomic orbital electron populations 1.21825 0.94707 1.00986 1.02099 1.22386 0.95678 0.98990 0.89341 0.87683 1.23408 0.99774 0.92278 0.98116 1.63573 1.08441 1.14526 1.37322 1.23068 0.92582 1.01232 0.94864 1.23038 0.86603 1.03046 0.98954 1.63999 1.09465 1.12499 1.37006 1.23002 1.01319 0.89869 0.96830 1.22300 0.93664 0.98066 0.93589 0.86490 1.20859 0.83292 0.79082 0.86550 1.90516 1.74140 1.56312 1.23356 1.48188 1.28034 1.37785 1.18513 1.18712 0.82610 0.94245 0.89657 1.21655 0.95025 1.16735 1.23776 0.92401 1.25793 1.01992 0.96473 0.94567 1.70066 1.27291 1.31871 1.27574 0.85439 0.78945 0.78820 0.78084 1.18777 1.19621 1.21072 1.20183 0.97635 0.91197 0.84821 1.22977 0.81390 0.97587 1.07805 1.21906 1.00912 0.93358 1.06718 1.22133 0.91686 1.02099 1.08874 1.24836 1.01286 0.80063 1.03805 1.83967 1.20810 1.32342 1.70797 0.95083 0.92328 0.91123 0.89341 0.89806 0.88814 0.89066 0.88442 0.88168 0.90822 0.86731 0.95916 0.98853 0.92525 0.86597 0.86912 0.84223 0.81538 0.74079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.63 71.98 0.62 -3.74 16 2 C 0.05 1.25 3.05 44.91 0.14 1.39 16 3 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.01 -0.21 5.37 86.29 0.46 0.26 16 5 N -0.52 -15.86 5.10 -870.92 -4.44 -20.30 16 6 C 0.01 0.24 6.14 86.31 0.53 0.77 16 7 C 0.01 0.23 6.14 86.31 0.53 0.76 16 8 N -0.51 -12.33 5.24 -866.62 -4.54 -16.87 16 9 C 0.02 0.54 3.62 86.29 0.31 0.85 16 10 C 0.04 1.19 2.06 44.16 0.09 1.28 16 11 H 0.12 3.48 6.52 -2.39 -0.02 3.47 16 12 C 0.51 21.94 5.73 87.66 0.50 22.44 16 13 O -0.56 -29.37 13.06 -3.04 -0.04 -29.41 16 14 N -0.59 -25.37 2.44 -830.48 -2.02 -27.39 16 15 C 0.27 14.41 5.16 85.63 0.44 14.85 16 16 C -0.53 -29.94 9.39 25.60 0.24 -29.70 16 17 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 18 C 0.01 0.61 5.46 84.66 0.46 1.08 16 19 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 20 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.18 5.99 5.48 85.63 0.47 6.46 16 25 C -0.05 -1.45 6.77 24.83 0.17 -1.28 16 26 C -0.21 -6.49 10.81 22.19 0.24 -6.25 16 27 C -0.23 -5.68 10.91 22.19 0.24 -5.44 16 28 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 29 O -0.18 -4.97 9.41 -2.50 -0.02 -5.00 16 30 H 0.03 1.19 5.52 -2.38 -0.01 1.17 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.09 3.71 4.45 -2.49 -0.01 3.70 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 2.34 5.28 -2.39 -0.01 2.33 16 40 H 0.11 2.40 7.54 -2.38 -0.02 2.38 16 41 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 42 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 43 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 44 H 0.12 3.71 8.07 -2.39 -0.02 3.69 16 45 H 0.11 2.98 4.47 -2.39 -0.01 2.97 16 46 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 48 H 0.24 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -74.29 368.95 -1.54 -75.83 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.96 Total: 28.43 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.26 Total: 3.82 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -10.72 Total: -120.17 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.06 Total: -34.41 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.29 -1.54 -75.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548637810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.988 kcal (2) G-P(sol) polarization free energy of solvation -74.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds