Wall clock time and date at job start Tue Mar 31 2020 17:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.69103 * 2 1 4 4 C 1.53206 * 109.58124 * 239.66350 * 2 1 3 5 5 N 1.47314 * 108.80496 * 240.20450 * 4 2 1 6 6 C 1.47318 * 110.07874 * 60.85268 * 5 4 2 7 7 C 1.53211 * 108.80133 * 299.14669 * 6 5 4 8 8 N 1.47310 * 108.80539 * 359.97438 * 7 6 5 9 9 C 1.47270 * 110.16023 * 299.19292 * 8 7 6 10 10 C 1.47277 * 110.15648 * 299.19266 * 5 4 2 11 11 H 1.08996 * 109.69009 * 300.93589 * 10 5 4 12 12 C 1.50704 * 109.58150 * 180.60050 * 10 5 4 13 13 O 1.21284 * 119.99909 * 356.26880 * 12 10 5 14 14 N 1.34776 * 120.00113 * 176.26955 * 12 10 5 15 15 C 1.46494 * 120.00170 * 174.51350 * 14 12 10 16 16 C 1.50698 * 109.47252 * 89.99785 * 15 14 12 17 17 H 1.07997 * 119.99989 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00257 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46931 * 90.00460 * 20 18 16 22 22 H 1.48498 * 109.47471 * 210.00152 * 20 18 16 23 23 H 1.48498 * 109.47184 * 330.00206 * 20 18 16 24 24 C 1.46499 * 119.99829 * 354.51193 * 14 12 10 25 25 C 1.50700 * 109.47190 * 264.66067 * 24 14 12 26 26 C 1.34505 * 125.78840 * 89.71949 * 25 24 14 27 27 C 1.41382 * 106.83981 * 179.88971 * 26 25 24 28 28 C 1.34513 * 106.84291 * 0.36595 * 27 26 25 29 29 O 1.34304 * 108.41757 * 359.77520 * 28 27 26 30 30 H 1.09002 * 109.47031 * 299.65549 * 1 2 3 31 31 H 1.08997 * 109.47548 * 59.65622 * 1 2 3 32 32 H 1.08999 * 109.47071 * 179.65820 * 1 2 3 33 33 H 1.09001 * 109.58425 * 120.41406 * 4 2 1 34 34 H 1.08994 * 109.69718 * 0.07131 * 4 2 1 35 35 H 1.08996 * 109.58808 * 179.34592 * 6 5 4 36 36 H 1.09001 * 109.69337 * 59.00041 * 6 5 4 37 37 H 1.09008 * 109.57804 * 240.20100 * 7 6 5 38 38 H 1.08998 * 109.58337 * 119.80193 * 7 6 5 39 39 H 1.09000 * 109.57822 * 301.00463 * 9 8 7 40 40 H 1.09004 * 109.69218 * 180.66667 * 9 8 7 41 41 H 1.09010 * 109.47133 * 329.99836 * 15 14 12 42 42 H 1.08999 * 109.47343 * 210.00404 * 15 14 12 43 43 H 0.97010 * 120.00009 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.46919 * 24.66371 * 24 14 12 45 45 H 1.08998 * 109.47024 * 144.65965 * 24 14 12 46 46 H 1.08001 * 126.58507 * 0.02562 * 26 25 24 47 47 H 1.08005 * 126.58347 * 180.16884 * 27 26 25 48 48 H 1.07998 * 125.79226 * 179.74814 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0434 -0.7291 -1.2458 5 7 2.8554 -1.8822 -0.8203 6 6 2.0341 -2.8147 -0.0291 7 6 1.5207 -2.0855 1.2167 8 7 2.0242 -0.7013 1.1981 9 6 3.4968 -0.6966 1.2184 10 6 4.0098 -1.4253 -0.0281 11 1 4.6186 -0.7456 -0.6243 12 6 4.8390 -2.6130 0.3877 13 8 4.4688 -3.7357 0.1167 14 7 5.9918 -2.4277 1.0608 15 6 6.7366 -3.5819 1.5698 16 6 7.7159 -4.0489 0.5239 17 1 7.7776 -3.5368 -0.4249 18 6 8.5337 -5.1292 0.7787 19 7 8.4589 -5.7526 1.9343 20 14 9.7471 -5.7085 -0.5181 21 1 11.0408 -5.0023 -0.3361 22 1 9.9584 -7.1719 -0.3798 23 1 9.2069 -5.4119 -1.8691 24 6 6.5002 -1.0719 1.2833 25 6 7.4995 -0.7275 0.2091 26 6 7.2167 -0.1497 -0.9722 27 6 8.4421 -0.0092 -1.6632 28 6 9.3994 -0.5170 -0.8662 29 8 8.8226 -0.9505 0.2665 30 1 -0.3633 0.5085 0.8931 31 1 -0.3634 0.5191 -0.8868 32 1 -0.3633 -1.0276 -0.0061 33 1 2.6557 -0.0506 -1.8398 34 1 1.1997 -1.0765 -1.8420 35 1 2.6392 -3.6699 0.2716 36 1 1.1888 -3.1571 -0.6261 37 1 1.8811 -2.5931 2.1116 38 1 0.4307 -2.0783 1.2126 39 1 3.8514 -1.2080 2.1133 40 1 3.8609 0.3309 1.2163 41 1 6.0416 -4.3888 1.8028 42 1 7.2773 -3.2963 2.4721 43 1 7.8286 -5.4520 2.6076 44 1 5.6724 -0.3635 1.2502 45 1 6.9835 -1.0206 2.2590 46 1 6.2411 0.1514 -1.3243 47 1 8.5824 0.4202 -2.6442 48 1 10.4530 -0.5678 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548637813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:46 Heat of formation + Delta-G solvation = 32.738751 kcal Electronic energy + Delta-G solvation = -31153.994590 eV Core-core repulsion = 27212.105088 eV Total energy + Delta-G solvation = -3941.889502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.15901 -41.56716 -38.72193 -35.51478 -33.66151 -33.10772 -32.54820 -32.41223 -31.23357 -30.07478 -27.99875 -26.60509 -25.51985 -24.03174 -23.71232 -22.82719 -22.10764 -21.34697 -20.43011 -19.23158 -18.04380 -17.62445 -17.21570 -16.99164 -16.53846 -16.08859 -15.63281 -15.23268 -14.87483 -14.45715 -14.20378 -13.90112 -13.69000 -13.28707 -13.20351 -13.16657 -13.11509 -12.77244 -12.52774 -12.50145 -12.39062 -12.27577 -12.22241 -11.68243 -11.62236 -11.52669 -11.27007 -11.24214 -10.94732 -10.64329 -10.58108 -10.45764 -10.10011 -9.86474 -9.53230 -9.22739 -8.91791 -8.35128 -8.17072 -7.80327 -7.65747 -6.34243 -4.03986 2.08601 2.89634 3.12904 3.42962 3.44110 3.49210 3.50265 3.65048 3.70975 4.12564 4.46251 4.56161 4.61497 4.65530 4.78142 4.98695 5.02926 5.08036 5.08959 5.20636 5.21675 5.32259 5.34067 5.40121 5.41299 5.48299 5.51764 5.52747 5.61419 5.64971 5.71444 5.75174 5.90699 5.93813 6.10500 6.16810 6.23793 6.44514 6.47866 6.64982 6.73501 6.83177 6.99546 7.05480 7.12867 7.26673 7.57247 8.04574 8.11207 8.48528 8.79529 8.89972 9.63132 11.03723 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.004490 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.562774 B = 6235.070922 C = 7362.657085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 H 0.087 0.913 4 C 0.014 3.986 5 N -0.491 5.491 6 C -0.009 4.009 7 C 0.007 3.993 8 N -0.508 5.508 9 C 0.019 3.981 10 C 0.020 3.980 11 H 0.106 0.894 12 C 0.521 3.479 13 O -0.511 6.511 14 N -0.588 5.588 15 C 0.238 3.762 16 C -0.590 4.590 17 H 0.051 0.949 18 C 0.021 3.979 19 N -0.913 5.913 20 Si 1.069 2.931 21 H -0.288 1.288 22 H -0.284 1.284 23 H -0.290 1.290 24 C 0.185 3.815 25 C -0.004 4.004 26 C -0.215 4.215 27 C -0.221 4.221 28 C -0.037 4.037 29 O -0.150 6.150 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 16.201 -2.956 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 H 0.105 0.895 4 C -0.116 4.116 5 N -0.211 5.211 6 C -0.138 4.138 7 C -0.123 4.123 8 N -0.230 5.230 9 C -0.112 4.112 10 C -0.094 4.094 11 H 0.124 0.876 12 C 0.307 3.693 13 O -0.387 6.387 14 N -0.320 5.320 15 C 0.119 3.881 16 C -0.629 4.629 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.550 5.550 20 Si 0.898 3.102 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.216 1.216 24 C 0.060 3.940 25 C -0.057 4.057 26 C -0.235 4.235 27 C -0.240 4.240 28 C -0.106 4.106 29 O -0.044 6.044 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.602 14.277 -3.144 17.490 hybrid contribution -0.979 1.356 -0.223 1.687 sum -10.581 15.633 -3.367 19.175 Atomic orbital electron populations 1.21868 0.93677 1.02186 1.02050 1.22489 0.96574 0.98542 0.90042 0.89517 1.23064 0.98301 0.93130 0.97078 1.63612 1.06909 1.13199 1.37426 1.23392 0.98528 0.98141 0.93717 1.22980 1.00910 0.88730 0.99675 1.63981 1.07196 1.14758 1.37037 1.22995 0.88751 1.01373 0.98069 1.22506 0.94025 0.96791 0.96080 0.87608 1.19957 0.81505 0.89798 0.78036 1.90555 1.70015 1.25249 1.52835 1.48096 1.21986 1.06863 1.55073 1.19405 0.91253 0.82769 0.94647 1.22143 1.21532 1.17094 1.02105 0.93071 1.25683 0.98929 0.93521 1.00113 1.70790 1.36971 1.41403 1.05824 0.83532 0.75447 0.76475 0.74737 1.21508 1.20946 1.21596 1.19972 0.93127 0.85366 0.95528 1.22827 0.82667 1.01188 0.98995 1.21421 0.99077 1.07926 0.95110 1.21666 0.92704 1.07916 1.01707 1.23962 0.99196 1.01512 0.85934 1.84135 1.20027 1.62919 1.37288 0.91929 0.92013 0.92350 0.90360 0.89725 0.85836 0.90764 0.90295 0.89954 0.89325 0.89356 0.94843 0.95942 0.92386 0.88181 0.88990 0.84463 0.84068 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.63 37.16 0.32 -0.85 16 2 C 0.03 0.34 3.05 -67.36 -0.21 0.13 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.01 0.16 5.79 -3.49 -0.02 0.14 16 5 N -0.49 -7.39 5.08 -226.62 -1.15 -8.54 16 6 C -0.01 -0.13 5.70 -3.49 -0.02 -0.15 16 7 C 0.01 0.08 5.75 -3.49 -0.02 0.06 16 8 N -0.51 -6.05 5.25 -225.21 -1.18 -7.23 16 9 C 0.02 0.23 4.09 -3.50 -0.01 0.22 16 10 C 0.02 0.30 2.01 -68.54 -0.14 0.16 16 11 H 0.11 1.52 5.99 -51.93 -0.31 1.21 16 12 C 0.52 10.50 6.46 -10.98 -0.07 10.43 16 13 O -0.51 -12.47 13.21 5.55 0.07 -12.40 16 14 N -0.59 -11.98 2.41 -176.43 -0.42 -12.41 16 15 C 0.24 6.04 4.47 -5.20 -0.02 6.02 16 16 C -0.59 -16.83 9.11 -34.44 -0.31 -17.14 16 17 H 0.05 1.53 7.78 -52.49 -0.41 1.13 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 19 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 20 Si 1.07 26.42 29.90 -169.99 -5.08 21.34 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.18 2.96 5.53 -5.19 -0.03 2.93 16 25 C 0.00 -0.07 6.60 -35.63 -0.23 -0.31 16 26 C -0.22 -3.41 10.47 -39.71 -0.42 -3.83 16 27 C -0.22 -3.33 10.91 -39.70 -0.43 -3.76 16 28 C -0.04 -0.59 12.09 29.42 0.36 -0.23 16 29 O -0.15 -2.88 10.65 5.70 0.06 -2.82 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.89 7.62 -51.93 -0.40 0.49 16 35 H 0.12 2.30 5.07 -51.93 -0.26 2.04 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 39 H 0.09 1.20 7.35 -51.93 -0.38 0.81 16 40 H 0.09 0.90 7.50 -51.93 -0.39 0.51 16 41 H 0.03 0.94 7.37 -51.92 -0.38 0.56 16 42 H 0.02 0.57 7.81 -51.93 -0.41 0.17 16 43 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 44 H 0.10 1.23 4.46 -51.93 -0.23 1.00 16 45 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 46 H 0.14 1.87 6.65 -52.49 -0.35 1.53 16 47 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 48 H 0.20 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -34.79 367.83 -9.82 -44.61 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.05 Total: 4.67 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.36 Total: -5.66 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -2.00 Total: -55.29 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.13 Total: -15.21 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.08 Total: 21.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.79 -9.82 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548637813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.352 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds