Wall clock time and date at job start Tue Mar 31 2020 17:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.69103 * 2 1 4 4 C 1.53206 * 109.58124 * 239.66350 * 2 1 3 5 5 N 1.47314 * 108.80496 * 240.20450 * 4 2 1 6 6 C 1.47318 * 110.07874 * 60.85268 * 5 4 2 7 7 C 1.53211 * 108.80133 * 299.14669 * 6 5 4 8 8 N 1.47310 * 108.80539 * 359.97438 * 7 6 5 9 9 C 1.47270 * 110.16023 * 299.19292 * 8 7 6 10 10 C 1.47277 * 110.15648 * 299.19266 * 5 4 2 11 11 H 1.08996 * 109.69009 * 300.93589 * 10 5 4 12 12 C 1.50704 * 109.58150 * 180.60050 * 10 5 4 13 13 O 1.21284 * 119.99909 * 356.26880 * 12 10 5 14 14 N 1.34776 * 120.00113 * 176.26955 * 12 10 5 15 15 C 1.46494 * 120.00170 * 174.51350 * 14 12 10 16 16 C 1.50698 * 109.47252 * 89.99785 * 15 14 12 17 17 H 1.07997 * 119.99989 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00257 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46931 * 90.00460 * 20 18 16 22 22 H 1.48498 * 109.47471 * 210.00152 * 20 18 16 23 23 H 1.48498 * 109.47184 * 330.00206 * 20 18 16 24 24 C 1.46499 * 119.99829 * 354.51193 * 14 12 10 25 25 C 1.50700 * 109.47190 * 264.66067 * 24 14 12 26 26 C 1.34505 * 125.78840 * 89.71949 * 25 24 14 27 27 C 1.41382 * 106.83981 * 179.88971 * 26 25 24 28 28 C 1.34513 * 106.84291 * 0.36595 * 27 26 25 29 29 O 1.34304 * 108.41757 * 359.77520 * 28 27 26 30 30 H 1.09002 * 109.47031 * 299.65549 * 1 2 3 31 31 H 1.08997 * 109.47548 * 59.65622 * 1 2 3 32 32 H 1.08999 * 109.47071 * 179.65820 * 1 2 3 33 33 H 1.09001 * 109.58425 * 120.41406 * 4 2 1 34 34 H 1.08994 * 109.69718 * 0.07131 * 4 2 1 35 35 H 1.08996 * 109.58808 * 179.34592 * 6 5 4 36 36 H 1.09001 * 109.69337 * 59.00041 * 6 5 4 37 37 H 1.09008 * 109.57804 * 240.20100 * 7 6 5 38 38 H 1.08998 * 109.58337 * 119.80193 * 7 6 5 39 39 H 1.09000 * 109.57822 * 301.00463 * 9 8 7 40 40 H 1.09004 * 109.69218 * 180.66667 * 9 8 7 41 41 H 1.09010 * 109.47133 * 329.99836 * 15 14 12 42 42 H 1.08999 * 109.47343 * 210.00404 * 15 14 12 43 43 H 0.97010 * 120.00009 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.46919 * 24.66371 * 24 14 12 45 45 H 1.08998 * 109.47024 * 144.65965 * 24 14 12 46 46 H 1.08001 * 126.58507 * 0.02562 * 26 25 24 47 47 H 1.08005 * 126.58347 * 180.16884 * 27 26 25 48 48 H 1.07998 * 125.79226 * 179.74814 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0434 -0.7291 -1.2458 5 7 2.8554 -1.8822 -0.8203 6 6 2.0341 -2.8147 -0.0291 7 6 1.5207 -2.0855 1.2167 8 7 2.0242 -0.7013 1.1981 9 6 3.4968 -0.6966 1.2184 10 6 4.0098 -1.4253 -0.0281 11 1 4.6186 -0.7456 -0.6243 12 6 4.8390 -2.6130 0.3877 13 8 4.4688 -3.7357 0.1167 14 7 5.9918 -2.4277 1.0608 15 6 6.7366 -3.5819 1.5698 16 6 7.7159 -4.0489 0.5239 17 1 7.7776 -3.5368 -0.4249 18 6 8.5337 -5.1292 0.7787 19 7 8.4589 -5.7526 1.9343 20 14 9.7471 -5.7085 -0.5181 21 1 11.0408 -5.0023 -0.3361 22 1 9.9584 -7.1719 -0.3798 23 1 9.2069 -5.4119 -1.8691 24 6 6.5002 -1.0719 1.2833 25 6 7.4995 -0.7275 0.2091 26 6 7.2167 -0.1497 -0.9722 27 6 8.4421 -0.0092 -1.6632 28 6 9.3994 -0.5170 -0.8662 29 8 8.8226 -0.9505 0.2665 30 1 -0.3633 0.5085 0.8931 31 1 -0.3634 0.5191 -0.8868 32 1 -0.3633 -1.0276 -0.0061 33 1 2.6557 -0.0506 -1.8398 34 1 1.1997 -1.0765 -1.8420 35 1 2.6392 -3.6699 0.2716 36 1 1.1888 -3.1571 -0.6261 37 1 1.8811 -2.5931 2.1116 38 1 0.4307 -2.0783 1.2126 39 1 3.8514 -1.2080 2.1133 40 1 3.8609 0.3309 1.2163 41 1 6.0416 -4.3888 1.8028 42 1 7.2773 -3.2963 2.4721 43 1 7.8286 -5.4520 2.6076 44 1 5.6724 -0.3635 1.2502 45 1 6.9835 -1.0206 2.2590 46 1 6.2411 0.1514 -1.3243 47 1 8.5824 0.4202 -2.6442 48 1 10.4530 -0.5678 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548637813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:44 Heat of formation + Delta-G solvation = 6.347040 kcal Electronic energy + Delta-G solvation = -31155.139021 eV Core-core repulsion = 27212.105088 eV Total energy + Delta-G solvation = -3943.033933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.41818 -42.68157 -40.21579 -37.16609 -35.30621 -34.51870 -33.78744 -33.47718 -32.38562 -31.48686 -29.36885 -28.04582 -26.88010 -25.39252 -24.99126 -24.25004 -23.24902 -22.57963 -21.73701 -20.62160 -19.25425 -19.17890 -18.67547 -18.38524 -17.57736 -17.30532 -17.10199 -16.64397 -16.26603 -15.94809 -15.63970 -15.44765 -14.86348 -14.78051 -14.41341 -14.25294 -14.11701 -14.01455 -13.97234 -13.67176 -13.60069 -13.53607 -13.40923 -13.21415 -13.08943 -12.78751 -12.65083 -12.47087 -12.40339 -12.18833 -12.05738 -11.62949 -11.44819 -11.25561 -10.87999 -10.75872 -10.59974 -10.49160 -9.70967 -9.32110 -8.74575 -8.66969 -6.38640 0.79500 1.42281 1.52905 1.57970 1.70216 1.74099 2.11932 2.27198 2.50177 2.61529 3.06224 3.11495 3.36788 3.57447 3.62975 3.79768 3.83067 3.87740 3.99841 4.09034 4.19599 4.21827 4.30487 4.36998 4.39126 4.42031 4.50402 4.56072 4.67974 4.73159 4.77002 4.79572 4.87591 4.92689 4.94969 4.98657 5.03437 5.12764 5.25045 5.28488 5.42281 5.54711 5.68709 5.69155 5.82970 5.97975 6.12404 6.16901 6.32537 6.48896 6.54430 7.23657 7.38327 8.69364 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.004490 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.562774 B = 6235.070922 C = 7362.657085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.107 0.893 4 C 0.016 3.984 5 N -0.517 5.517 6 C -0.004 4.004 7 C 0.015 3.985 8 N -0.506 5.506 9 C 0.022 3.978 10 C 0.036 3.964 11 H 0.122 0.878 12 C 0.512 3.488 13 O -0.566 6.566 14 N -0.592 5.592 15 C 0.252 3.748 16 C -0.588 4.588 17 H 0.034 0.966 18 C -0.029 4.029 19 N -0.935 5.935 20 Si 1.111 2.889 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.285 1.285 24 C 0.183 3.817 25 C -0.037 4.037 26 C -0.210 4.210 27 C -0.224 4.224 28 C -0.051 4.051 29 O -0.186 6.186 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.125 0.875 41 H -0.004 1.004 42 H 0.018 0.982 43 H 0.255 0.745 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.162 0.838 47 H 0.171 0.829 48 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 19.518 -4.660 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.074 4.074 3 H 0.125 0.875 4 C -0.113 4.113 5 N -0.239 5.239 6 C -0.134 4.134 7 C -0.115 4.115 8 N -0.227 5.227 9 C -0.109 4.109 10 C -0.078 4.078 11 H 0.139 0.861 12 C 0.300 3.700 13 O -0.444 6.444 14 N -0.323 5.323 15 C 0.131 3.869 16 C -0.627 4.627 17 H 0.053 0.947 18 C -0.227 4.227 19 N -0.573 5.573 20 Si 0.933 3.067 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.211 1.211 24 C 0.060 3.940 25 C -0.088 4.088 26 C -0.230 4.230 27 C -0.243 4.243 28 C -0.119 4.119 29 O -0.082 6.082 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.143 0.857 41 H 0.013 0.987 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.160 0.840 45 H 0.113 0.887 46 H 0.179 0.821 47 H 0.189 0.811 48 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.324 17.663 -4.837 21.023 hybrid contribution -0.802 0.344 0.261 0.911 sum -11.126 18.007 -4.577 21.656 Atomic orbital electron populations 1.21852 0.92288 1.02104 1.03131 1.22634 0.97685 0.98860 0.88201 0.87468 1.23191 0.98295 0.91997 0.97849 1.63547 1.07618 1.15095 1.37638 1.23169 0.97953 0.97240 0.95020 1.22876 1.01977 0.89033 0.97640 1.64034 1.06549 1.13905 1.38256 1.23042 0.89339 1.02611 0.95890 1.22400 0.93619 0.94184 0.97609 0.86063 1.21005 0.81284 0.90868 0.76799 1.90551 1.71148 1.27888 1.54851 1.48038 1.21928 1.07324 1.54965 1.18873 0.90129 0.83959 0.93985 1.22287 1.21817 1.16787 1.01823 0.94731 1.27068 1.00645 0.93833 1.01179 1.70898 1.37593 1.42248 1.06524 0.83005 0.74657 0.76458 0.72551 1.18844 1.20619 1.21115 1.20302 0.94432 0.83558 0.95697 1.23071 0.82514 1.02983 1.00274 1.21814 1.00472 1.06441 0.94227 1.22090 0.92083 1.07372 1.02716 1.24723 1.00904 1.01070 0.85198 1.84100 1.21047 1.64015 1.39001 0.91703 0.90096 0.93026 0.88892 0.88920 0.90391 0.89775 0.92149 0.87861 0.90867 0.85732 0.98651 0.96365 0.93560 0.84042 0.88672 0.82066 0.81133 0.75860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.63 71.98 0.62 -1.12 16 2 C 0.04 0.57 3.05 44.89 0.14 0.71 16 3 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.02 0.30 5.79 86.29 0.50 0.80 16 5 N -0.52 -14.95 5.08 -870.90 -4.42 -19.37 16 6 C 0.00 -0.13 5.70 86.29 0.49 0.36 16 7 C 0.01 0.36 5.75 86.30 0.50 0.85 16 8 N -0.51 -10.72 5.25 -866.44 -4.54 -15.27 16 9 C 0.02 0.49 4.09 86.31 0.35 0.84 16 10 C 0.04 1.03 2.01 44.17 0.09 1.12 16 11 H 0.12 3.10 5.99 -2.39 -0.01 3.09 16 12 C 0.51 21.22 6.46 87.66 0.57 21.79 16 13 O -0.57 -29.35 13.21 -3.04 -0.04 -29.39 16 14 N -0.59 -24.84 2.41 -830.50 -2.00 -26.84 16 15 C 0.25 13.51 4.47 85.63 0.38 13.89 16 16 C -0.59 -34.79 9.11 25.60 0.23 -34.56 16 17 H 0.03 2.12 7.78 -2.91 -0.02 2.10 16 18 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16 19 N -0.93 -58.99 13.65 21.45 0.29 -58.70 16 20 Si 1.11 53.66 29.90 68.60 2.05 55.71 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 C 0.18 5.76 5.53 85.63 0.47 6.23 16 25 C -0.04 -1.26 6.60 24.83 0.16 -1.09 16 26 C -0.21 -6.13 10.47 22.19 0.23 -5.90 16 27 C -0.22 -6.16 10.91 22.19 0.24 -5.92 16 28 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 29 O -0.19 -7.09 10.65 -2.51 -0.03 -7.12 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.74 6.31 -2.39 -0.02 0.72 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.64 7.62 -2.39 -0.02 1.62 16 35 H 0.08 3.12 5.07 -2.39 -0.01 3.11 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.10 2.08 6.17 -2.39 -0.01 2.06 16 39 H 0.07 1.91 7.35 -2.39 -0.02 1.89 16 40 H 0.12 1.94 7.50 -2.38 -0.02 1.92 16 41 H 0.00 -0.27 7.37 -2.38 -0.02 -0.29 16 42 H 0.02 0.99 7.81 -2.39 -0.02 0.97 16 43 H 0.26 16.19 7.22 -92.70 -0.67 15.52 16 44 H 0.14 3.14 4.46 -2.38 -0.01 3.13 16 45 H 0.09 2.89 7.97 -2.39 -0.02 2.87 16 46 H 0.16 3.78 6.65 -2.91 -0.02 3.76 16 47 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 48 H 0.23 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -80.68 367.83 -1.37 -82.05 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.07 Total: 22.96 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.25 Total: -4.03 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -10.68 Total: -120.18 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.07 Total: -36.51 kcal Atomic # 14 Polarization: 53.66 SS G_CDS: 2.05 Total: 55.71 kcal Total: -80.68 -1.37 -82.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548637813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.397 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds